>SPT_ARATH (Q9FUA4) Protein SPATULA|
          Length = 373

 Score = 37.4 bits (85), Expect = 0.028
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
 Frame = +2

Query: 266 GPASVPELSSS-----SGRSATAVRSLKVHXXXXXXXXXXINTHLATLRRMIPDANQMDK 430
           G A V E  SS     S  S+   R+ +VH          IN  +  L+ +IP++N+ DK
Sbjct: 173 GEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDK 232

Query: 431 ATLLACVVNQVKELKRKATETTRLQATALIP 523
           A++L   +  +K+L+ +    T      L P
Sbjct: 233 ASMLDEAIEYLKQLQLQVQMLTMRNGINLHP 263

>PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrome-associated|
           protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
           (AtbHLH008)
          Length = 524

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 293 SSSGRSATAVRSLKVHXXXXXXXXXXINTHLATLRRMIPDANQMDKATLLACVVNQVKEL 472
           S +G  +   RS +VH          IN  +  L+ +IP+ N++DKA++L   +  +K L
Sbjct: 333 SRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSL 392

Query: 473 K 475
           +
Sbjct: 393 Q 393

>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Arabidopsis|
           protein 1) (RAP-1) (Basic helix-loop-helix protein 6)
           (bHLH6) (AtbHLH006) (rd22BP1)
          Length = 623

 Score = 36.2 bits (82), Expect = 0.063
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 371 INTHLATLRRMIPDANQMDKATLLACVVNQVKELKRKA--TETTRLQ 505
           +N     LR ++P+ ++MDKA+LL   +  + ELK K   TE+ +LQ
Sbjct: 464 LNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQ 510

>RPOB_EHRCJ (Q3YST5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1380

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -2

Query: 224  QCEKQQVSTYSQS-----WWNIQMTDETTM 150
            QC  Q V+ Y +S     WWN+ ++DET +
Sbjct: 1008 QCNNQNVNDYLESTPKKDWWNVNLSDETVL 1037

>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF expression 1)|
           (Basic helix-loop-helix protein 116) (bHLH116)
           (AtbHLH116)
          Length = 494

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
 Frame = +2

Query: 371 INTHLATLRRMIPDANQMDKATLLACVVNQVKELKRKATET-TRLQAT--ALIPPEAN 535
           +N  L  LR ++P  ++MD+A++L   ++ +KEL ++  +    L++T    +PP ++
Sbjct: 319 LNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPTSS 376

>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop-helix|
           protein 42) (bHLH42) (AtbHLH042)
          Length = 518

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 371 INTHLATLRRMIPDANQMDKATLLACVVNQVKELKRKATE 490
           +N    TLR M+P   +MDK ++L   +  V  L+++  E
Sbjct: 375 LNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHE 414

>PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic helix-loop-helix|
           protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
          Length = 430

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 290 SSSSGRSATAVRSLKVHXXXXXXXXXXINTHLATLRRMIPDANQMDKATLLACVVNQVKE 469
           S S+ RS    R+ +VH          IN  +  L+ +IP  ++ DKA++L   ++ +K 
Sbjct: 250 SGSNRRS----RAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKS 305

Query: 470 LK 475
           L+
Sbjct: 306 LQ 307

>PDR6_ARATH (Q7PC87) Pleiotropic drug resistance protein 6|
          Length = 1453

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 463 HLIHHTG*QGGLVHLVSIRDHSPQSGQVGIDPLPASPLGLAMD 335
           H   H+G  G +V L S   H P+ G V    LP  PL LA +
Sbjct: 817 HKGSHSGTGGSVVELTSTSSHGPKKGMV----LPFQPLSLAFN 855

>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3) (Basic|
           helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
           (AtMyc-146)
          Length = 596

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +2

Query: 371 INTHLATLRRMIPDANQMDKATLLACVVNQVKELKRKATETTRLQATA 514
           +N    TLR +IP  +++DK ++L   +  +++L+++  E    + +A
Sbjct: 417 LNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELESCRESA 464

>Y963_MYCBO (P59971) Putative DNA ligase-like protein Mb0963|
          Length = 759

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 277 RAGAVIVVWEERDGSKVTEGP*RVREATPGEDQYPPGHSEENDP 408
           RAG V V W +  GSK T  P  +R  T      P   +E +DP
Sbjct: 220 RAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAPRTWAELDDP 263

>Y938_MYCTU (P71571) Putative DNA ligase-like protein Rv0938/MT0965|
          Length = 759

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 277 RAGAVIVVWEERDGSKVTEGP*RVREATPGEDQYPPGHSEENDP 408
           RAG V V W +  GSK T  P  +R  T      P   +E +DP
Sbjct: 220 RAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAPRTWAELDDP 263

>Y2921_MYCBO (P68908) Hypothetical protein Mb2921c|
          Length = 503

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +2

Query: 116 HSLLFTVSGCNPLLFRPSFVCSTTTESR*RLVASRIGEDKWWPRPMAACQGPASVPELSS 295
           HS+   +SG  PL+ RP FV    + S    VA+ +G      RP A  +    V  L  
Sbjct: 250 HSVAGLLSGDTPLITRPPFVAPHHSSS----VAALVGGGSGMARPGAVSRAHRGVLFLDE 305

Query: 296 SSGRSATAVRSLK 334
            +  S +A+ +L+
Sbjct: 306 CAEISLSALEALR 318

>Y2897_MYCTU (P68909) Hypothetical protein Rv2897c/MT2965|
          Length = 503

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +2

Query: 116 HSLLFTVSGCNPLLFRPSFVCSTTTESR*RLVASRIGEDKWWPRPMAACQGPASVPELSS 295
           HS+   +SG  PL+ RP FV    + S    VA+ +G      RP A  +    V  L  
Sbjct: 250 HSVAGLLSGDTPLITRPPFVAPHHSSS----VAALVGGGSGMARPGAVSRAHRGVLFLDE 305

Query: 296 SSGRSATAVRSLK 334
            +  S +A+ +L+
Sbjct: 306 CAEISLSALEALR 318

>PTB2_XENLA (P48533) Pleiotrophic factor-beta-2 precursor (PTF-beta-2)|
          Length = 161

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 240 HHLSSPMREATSLYLLSVVVEHTNDGRNNNGLQPETVKSNECGDW 106
           HH       A   +LL + V  T+ G+ +   Q + VK ++CGDW
Sbjct: 2   HHQHGLFMLALLAFLLVMTVLGTDTGKKDK--QEKKVKKSDCGDW 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,790,099
Number of Sequences: 219361
Number of extensions: 1745348
Number of successful extensions: 4008
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4007
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)