>MTNA_PSEAE (Q9HZ65) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 358

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +1

Query: 106 GALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           G LRLLDQR LP EEV+++ + +A+   AIRDMVVRG
Sbjct: 19  GTLRLLDQRLLPQEEVWLEHESAAEVAKAIRDMVVRG 55

>MTNA_THEMA (Q9X013) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 343

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +1

Query: 109 ALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           +L+LLDQRKLP  E YV+ K   +  +AI++M+VRG
Sbjct: 14  SLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRG 49

>MTNA_XYLFT (Q87A92) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 354

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +1

Query: 112 LRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           L+LLDQRKLP    YV+   S D   AIR ++VRG
Sbjct: 25  LKLLDQRKLPFVVEYVECHSSEDVTQAIRTLIVRG 59

>MTNA_XYLFA (Q9PAG5) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 354

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +1

Query: 112 LRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           L+LLDQRKLP    YV+   S D   AIR ++VRG
Sbjct: 25  LKLLDQRKLPFVVEYVECHSSEDVTQAIRALIVRG 59

>EI2B_AQUAE (O67879) Putative translation initiation factor eIF-2B (eIF-2B|
           GDP-GTP exchange factor)
          Length = 456

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +1

Query: 67  GESSALQSILHGRGALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           GE   ++        L LLDQRKLP +EV++++K   +   AI++M VRG
Sbjct: 128 GEKMEVKPFYWKGDKLLLLDQRKLPHQEVWLELKTYEEVAKAIKEMAVRG 177

>MTNA_PSEPK (Q88M09) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 358

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 21/37 (56%), Positives = 24/37 (64%)
 Frame = +1

Query: 106 GALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           GAL LLDQR LP EE ++   + A    AIRDM VRG
Sbjct: 19  GALHLLDQRLLPSEERWLACDNVAQVAAAIRDMAVRG 55

>MTNA_LEPIN (Q8F2A8) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 364

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 23/49 (46%), Positives = 27/49 (55%)
 Frame = +1

Query: 70  ESSALQSILHGRGALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           + S L+ IL     L LLDQR LP    Y+  K   D   AIR+MVVRG
Sbjct: 2   QESGLKPILWKNKELILLDQRVLPGTTSYITAKTLEDCIFAIREMVVRG 50

>MTNA_LEPIC (Q72T46) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 364

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 23/49 (46%), Positives = 27/49 (55%)
 Frame = +1

Query: 70  ESSALQSILHGRGALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           + S L+ IL     L LLDQR LP    Y+  K   D   AIR+MVVRG
Sbjct: 2   QESGLKPILWKNKELILLDQRVLPGTTSYITAKTLEDCIFAIREMVVRG 50

>MTNA_PSESM (Q885T7) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 358

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +1

Query: 109 ALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           AL LLDQR LP EEV+     +A    AIR MVVRG
Sbjct: 20  ALYLLDQRVLPFEEVWHRYTTAAGVAEAIRTMVVRG 55

>EI2B1_METTH (O27900) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 311

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +1

Query: 106 GALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           G L L+DQRKLP    Y   +D  D   AI++MVVRG
Sbjct: 11  GELVLIDQRKLPDSLEYFRCRDYRDVIYAIKNMVVRG 47

>EI2B1_METJA (Q57896) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 329

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +1

Query: 112 LRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           L L+DQRKLP +  Y   K   D   AI+DMVVRG
Sbjct: 17  LILIDQRKLPNKLEYFICKTYEDVAYAIKDMVVRG 51

>YQJQ_CAEEL (Q93169) Hypothetical protein C01G10.9 in chromosome V|
          Length = 366

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 70  ESSALQSILHGRGALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           ES  L S+      L +LDQ  LP E  Y+ V+  +D +  I+ M VRG
Sbjct: 21  ESKRLDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRG 69

>YP18_YEAST (Q06489) Hypothetical 45.0 kDa protein in PIS1-CLB2 intergenic|
           region
          Length = 411

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 109 ALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           ++++LDQ  LP    YV +    DG++ I+ M VRG
Sbjct: 17  SVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRG 52

>MTNA_SYNY3 (P74497) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 351

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 118 LLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           L+DQ +LPLE   V + D     +AI+ MVVRG
Sbjct: 22  LIDQTRLPLEYKEVAIADYEAMGHAIKSMVVRG 54

>MTNA_BACSU (O31662) Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)|
           (MTR-1-P isomerase)
          Length = 353

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 109 ALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           A+ +L+Q+KLP E  Y+++    D ++AI  + VRG
Sbjct: 17  AITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRG 52

>AROB_THEFY (Q47QY7) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 368

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +1

Query: 31  AVRVSPNFTARMGESSALQSI-------LHGRGALRLLDQRKLPLEEVYVDVKDSADGWN 189
           A+  + N+T R G + ++  +       L GR    L+ + +  LE V + V+  AD W 
Sbjct: 252 AIERAENYTFRHGYAISIGMVFAAELARLDGRIDAALVARHRRILESVGLPVRYRADAWP 311

Query: 190 AIRDMV 207
           A+RD +
Sbjct: 312 ALRDTI 317

>YPE3_RHORU (P23140) Hypothetical protein in petC 3'region (Fragment)|
          Length = 184

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +1

Query: 106 GALRLLDQRKLPLEEVYVDVKDSADGWNAIRDMVVRG 216
           GA+ ++DQ +LP E V   + D     +AIR M+VRG
Sbjct: 18  GAVWIIDQTRLPHEFVTQRLNDLGAVAHAIRAMLVRG 54

>Y1209_CAMJE (Q9PN86) UPF0144 protein Cj1209|
          Length = 517

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 153 DLLEGQLPLIEEAERAAAVEDGLKRARFAHSGREIR 46
           ++LE  L  + E E  A  ++G+K A   ++GREIR
Sbjct: 433 EVLEAFLKRVSELEDIAKSKEGIKNAYAINAGREIR 468

>SYA_PARUW (Q6MB06) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 878

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 25  IRAVRVSPNFTARMGESS-ALQSILHGRGALRLLDQRKLPLEEVYVDVKDS 174
           IR ++   N   ++ E S A   I+ G  A +L D   LP+EE+ +  KDS
Sbjct: 359 IRTLKRGGNILNQVIEKSRASHQIISGDDAFKLKDTYGLPIEEILLIAKDS 409

>Y2300_LACPL (Q88UZ5) UPF0144 protein lp_2300|
          Length = 519

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 147 LEGQLPLIEEAERAAAVEDGLKRARFAHSGREIR 46
           LE  +  +E+ E  A  EDG+K++    +GREIR
Sbjct: 437 LENYIHRLEKLEAIANNEDGVKKSYAIQAGREIR 470

>NPD2_GEOKA (Q5KZE8) NAD-dependent deacetylase 2 (EC 3.5.1.-) (Regulatory|
           protein SIR2 homolog 2)
          Length = 247

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 240 CCYGYGRSTTDNHVSDRIPSIRGVLDVDVDLLEGQLPLIEEAERAAAVED 91
           C   Y  S  + H   R    + ++  DV L  G +P +EEA  AAA  D
Sbjct: 132 CGNKYDLSFINRHEVPRCEKCQTIVKPDVVLFGGLVPRMEEAFAAAAASD 181

>ARLY_CHRVO (Q7P1U7) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 459

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 225 GRSTTDNHVSDRIPSIRGVLDVDVDLLEG-QLPLIEEAERAA 103
           GRS  D   +D    +RG +D  V LL G Q  L+E AER A
Sbjct: 108 GRSRNDQVATDIRLWLRGEIDATVHLLAGLQSSLLELAERHA 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,078,575
Number of Sequences: 219361
Number of extensions: 421578
Number of successful extensions: 1435
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)