ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103761.1| Zea mays PCO149839 mRNA sequence 192 9e-46
2ref|NM_192999.1| Oryza sativa (japonica cultivar-group), predic... 123 7e-25
3dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
5dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
6dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
7gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
10dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
11gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 44 0.50
12gb|AY585706.1| Cyprinus carpio coilin p80 mRNA, partial cds 42 2.0
13gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome... 42 2.0
14gb|AY349011.1| Burkholderia cepacia phage Bcep22, complete genome 42 2.0
15emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 42 2.0
16gb|AC093547.3| Drosophila melanogaster 3L BAC RP98-2K11 (Roswell... 42 2.0
17gb|AC023676.4| Drosophila melanogaster 3L BAC RP98-22C11 (Roswel... 42 2.0
18dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 42 2.0
19gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 42 2.0
20gb|AC015604.5|AC015604 Homo sapiens, clone RP11-45D18, complete ... 42 2.0
21emb|AJ339750.1|HSA339750 Homo sapiens genomic sequence surroundi... 42 2.0
22tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete int... 42 2.0
23gb|AE003597.4| Drosophila melanogaster chromosome 3L, section 78... 42 2.0
24dbj|AP000428.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.0
25gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 42 2.0
26ref|NM_188968.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
27ref|XM_657162.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.8
28emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 7.8
29emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.8
30gb|BC043788.1| Xenopus laevis osteoglycin, mRNA (cDNA clone MGC:... 40 7.8
31gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 7.8
32dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 7.8
33gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 7.8
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
35dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
36dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.8
37ref|XM_222251.3| PREDICTED: Rattus norvegicus E1A binding protei... 40 7.8
38dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
39dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
40dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
41dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
42dbj|AK072222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
43gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 7.8 
>gb|AY103761.1| Zea mays PCO149839 mRNA sequence
          Length = 693

 Score =  192 bits (97), Expect = 9e-46
 Identities = 208/245 (84%)
 Strand = Plus / Plus

                                                                       
Query: 329 gaggtagactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgac 388
           ||||| ||||||||| || |||||||||||| |||||  |||   | |||||||||||||
Sbjct: 368 gaggtggactgggagtccacctacttcatccagcaccaccccaagaccaacgtcgccgac 427

                                                                       
Query: 389 ttcccggagatcccgccggccacacgagagatgctcgacgtgtacatcggacagatggtg 448
           ||||| |||||| ||||| | |||||||||| ||| |||| |||| |||  |||||||||
Sbjct: 428 ttcccagagatcacgccgccgacacgagagacgctggacgcgtacgtcgcgcagatggtg 487

                                                                       
Query: 449 tcgctcgcagagcggctggccgagtgcatgagcctgaacctgggcctggacggcggccgc 508
           || ||||| ||||| |||||||||||||||||||| |||||||||||   ||| | || |
Sbjct: 488 tccctcgcggagcgtctggccgagtgcatgagcctcaacctgggcctccccggggcccac 547

                                                                       
Query: 509 gtcaaagacaccttcgcgccgccgttcgtcgggaccaagttcgccatgtacccggcctgc 568
           |||   | ||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct: 548 gtcgccgccaccttcgcgccgccgttcgtgggcaccaagttcgccatgtacccgtcctgc 607

                
Query: 569 ccgcg 573
           |||||
Sbjct: 608 ccgcg 612



 Score =  123 bits (62), Expect = 7e-25
 Identities = 125/146 (85%)
 Strand = Plus / Plus

                                                                       
Query: 139 gctccacgaagcctgcaaggactggggcttcttctgggtggacagccatggcgtcgacgc 198
           ||||||||| |||||||||||||||||||||||||||||||| | ||| ||||| |||||
Sbjct: 172 gctccacgacgcctgcaaggactggggcttcttctgggtggagaaccacggcgtggacgc 231

                                                                       
Query: 199 cgcgctgatggaggaggtgaagcgcttcgtgtatgcccactacgacgagcatctcaagga 258
             |||||||||| ||||| ||||||||||| || | ||||||||| ||||| ||  ||| 
Sbjct: 232 gccgctgatggacgaggtcaagcgcttcgtctacggccactacgaggagcacctggaggc 291

                                     
Query: 259 taggttctacgcctcggacctcgcca 284
            | |||||||||||| | ||||||||
Sbjct: 292 caagttctacgcctccgccctcgcca 317
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>ref|NM_192999.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 939

 Score =  123 bits (62), Expect = 7e-25
 Identities = 134/158 (84%)
 Strand = Plus / Plus

                                                                       
Query: 128 accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggtggacagccat 187
           |||||||| | ||||||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct: 61  accatggcccagctccacgaggcctgtaaggactggggcttcttctgggtggaaaaccat 120

                                                                       
Query: 188 ggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgcccactacgacgag 247
           ||||| || || ||| | ||||||||||||||| ||||||||||   ||| |||||||||
Sbjct: 121 ggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccgccattacgacgag 180

                                                 
Query: 248 catctcaaggataggttctacgcctcggacctcgccaa 285
           || ||  || | |  ||||||||||| |||||||||||
Sbjct: 181 cacctggagaagaaattctacgcctccgacctcgccaa 218



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 519 ccttcgcgccgccgttcgtcgggaccaagttcgccatgtaccc 561
           |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 473 ccttcgcgccgccgttcgtcggcaccaagttcgccatgtaccc 515



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 335 gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
           ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 286 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 345

                         
Query: 395 gagatcccgccggc 408
           || |||||||||||
Sbjct: 346 gacatcccgccggc 359
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>dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H01, full
           insert sequence
          Length = 1183

 Score =  123 bits (62), Expect = 7e-25
 Identities = 134/158 (84%)
 Strand = Plus / Plus

                                                                       
Query: 128 accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggtggacagccat 187
           |||||||| | ||||||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct: 183 accatggcccagctccacgaggcctgtaaggactggggcttcttctgggtggaaaaccat 242

                                                                       
Query: 188 ggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgcccactacgacgag 247
           ||||| || || ||| | ||||||||||||||| ||||||||||   ||| |||||||||
Sbjct: 243 ggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccgccattacgacgag 302

                                                 
Query: 248 catctcaaggataggttctacgcctcggacctcgccaa 285
           || ||  || | |  ||||||||||| |||||||||||
Sbjct: 303 cacctggagaagaaattctacgcctccgacctcgccaa 340



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 519 ccttcgcgccgccgttcgtcgggaccaagttcgccatgtaccc 561
           |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 595 ccttcgcgccgccgttcgtcggcaccaagttcgccatgtaccc 637



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 335 gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
           ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 408 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 467

                         
Query: 395 gagatcccgccggc 408
           || |||||||||||
Sbjct: 468 gacatcccgccggc 481
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                           
Query: 519      ccttcgcgccgccgttcgtcgggaccaagttcgccatgtaccc 561
                |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 22486489 ccttcgcgccgccgttcgtcggcaccaagttcgccatgtaccc 22486531



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                            
Query: 335      gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
                ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 22486302 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 22486361

                              
Query: 395      gagatcccgccggc 408
                || |||||||||||
Sbjct: 22486362 gacatcccgccggc 22486375



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                  
Query: 128      accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggt 177
                |||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 22485788 accatggcccagctccacgaggcctgtaaggactggggcttcttctgggt 22485837



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 175      ggtggacagccatggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgc 234
                |||||| | ||||||||| || || ||| | ||||||||||||||| ||||||||||   
Sbjct: 22486124 ggtggaaaaccatggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccg 22486183

                                                                   
Query: 235      ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
                ||| ||||||||||| ||  || | |  ||||||||||| |||||||||||
Sbjct: 22486184 ccattacgacgagcacctggagaagaaattctacgcctccgacctcgccaa 22486234



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 149      gcctgcaaggactggggcttcttc 172
                |||||| |||||||||||||||||
Sbjct: 14085115 gcctgccaggactggggcttcttc 14085138
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>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1097D05
          Length = 144879

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                       
Query: 519  ccttcgcgccgccgttcgtcgggaccaagttcgccatgtaccc 561
            |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2226 ccttcgcgccgccgttcgtcggcaccaagttcgccatgtaccc 2268



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 335  gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
            ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 2039 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 2098

                          
Query: 395  gagatcccgccggc 408
            || |||||||||||
Sbjct: 2099 gacatcccgccggc 2112



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                              
Query: 128  accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggt 177
            |||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1525 accatggcccagctccacgaggcctgtaaggactggggcttcttctgggt 1574



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                        
Query: 175  ggtggacagccatggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgc 234
            |||||| | ||||||||| || || ||| | ||||||||||||||| ||||||||||   
Sbjct: 1861 ggtggaaaaccatggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccg 1920

                                                               
Query: 235  ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
            ||| ||||||||||| ||  || | |  ||||||||||| |||||||||||
Sbjct: 1921 ccattacgacgagcacctggagaagaaattctacgcctccgacctcgccaa 1971
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>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0672C09
          Length = 145655

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                         
Query: 519    ccttcgcgccgccgttcgtcgggaccaagttcgccatgtaccc 561
              |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 110627 ccttcgcgccgccgttcgtcggcaccaagttcgccatgtaccc 110669



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                          
Query: 335    gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
              ||||||||| || |||||||||||| |||||| |||   |||| || |||||||||||||
Sbjct: 110440 gactgggaggccacctacttcatccagcaccgccccaagaacaccgccgccgacttcccg 110499

                            
Query: 395    gagatcccgccggc 408
              || |||||||||||
Sbjct: 110500 gacatcccgccggc 110513



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                
Query: 128    accatggcgcggctccacgaagcctgcaaggactggggcttcttctgggt 177
              |||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct: 109926 accatggcccagctccacgaggcctgtaaggactggggcttcttctgggt 109975



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                          
Query: 175    ggtggacagccatggcgtcgacgccgcgctgatggaggaggtgaagcgcttcgtgtatgc 234
              |||||| | ||||||||| || || ||| | ||||||||||||||| ||||||||||   
Sbjct: 110262 ggtggaaaaccatggcgtggaggcggcgttaatggaggaggtgaagagcttcgtgtaccg 110321

                                                                 
Query: 235    ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
              ||| ||||||||||| ||  || | |  ||||||||||| |||||||||||
Sbjct: 110322 ccattacgacgagcacctggagaagaaattctacgcctccgacctcgccaa 110372
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>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 335   gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
             ||||||||| || |||||||| ||| |||||| |||   ||||||| |||||||||||||
Sbjct: 68384 gactgggaggccacctacttcgtccagcaccgccccaagaacaacgccgccgacttcccg 68325

                           
Query: 395   gagatcccgccggc 408
             || |||||||||||
Sbjct: 68324 gacatcccgccggc 68311



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 235   ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
             ||||||||||||||||||| || | | |||||||||||| |||||||||||
Sbjct: 69239 ccactacgacgagcatctcgagaacaagttctacgcctccgacctcgccaa 69189



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 519   ccttcgcgccgccgttcgtcgg 540
             ||||||||||||||||||||||
Sbjct: 68197 ccttcgcgccgccgttcgtcgg 68176
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                            
Query: 335      gactgggagaccgcctacttcatccggcaccgtcccgccaacaacgtcgccgacttcccg 394
                ||||||||| || |||||||| ||| |||||| |||   ||||||| |||||||||||||
Sbjct: 20646344 gactgggaggccacctacttcgtccagcaccgccccaagaacaacgccgccgacttcccg 20646285

                              
Query: 395      gagatcccgccggc 408
                || |||||||||||
Sbjct: 20646284 gacatcccgccggc 20646271



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 235      ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
                ||||||||||||||||||| || | | |||||||||||| |||||||||||
Sbjct: 20647199 ccactacgacgagcatctcgagaacaagttctacgcctccgacctcgccaa 20647149



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 519      ccttcgcgccgccgttcgtcgg 540
                ||||||||||||||||||||||
Sbjct: 20646157 ccttcgcgccgccgttcgtcgg 20646136
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 235      ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
                ||||||||||||||||||| || | | |||||||||||| |||||||||||
Sbjct: 20475482 ccactacgacgagcatctcgagaacaagttctacgcctccgacctcgccaa 20475432



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 505      ccgcgtcaaagacaccttcgcgccgccgttcgtcgg 540
                ||||||||  ||| ||||||| ||||||||||||||
Sbjct: 20475176 ccgcgtcagggacgccttcgccccgccgttcgtcgg 20475141
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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0456B03
          Length = 152973

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 235    ccactacgacgagcatctcaaggataggttctacgcctcggacctcgccaa 285
              ||||||||||||||||||| || | | |||||||||||| |||||||||||
Sbjct: 106112 ccactacgacgagcatctcgagaacaagttctacgcctccgacctcgccaa 106062



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 505    ccgcgtcaaagacaccttcgcgccgccgttcgtcgg 540
              ||||||||  ||| ||||||| ||||||||||||||
Sbjct: 105806 ccgcgtcagggacgccttcgccccgccgttcgtcgg 105771
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 451    gctcgcagagcggctggccgag 472
              ||||||||||||||||||||||
Sbjct: 394239 gctcgcagagcggctggccgag 394218



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     cgccgcgctgatggaggagg 215
               ||||||||||||||||||||
Sbjct: 1570571 cgccgcgctgatggaggagg 1570590
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>gb|AY585706.1| Cyprinus carpio coilin p80 mRNA, partial cds
          Length = 287

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 147 aagcctgcaaggactggggct 167
           |||||||||||||||||||||
Sbjct: 126 aagcctgcaaggactggggct 146
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>gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome 5, complete sequence
          Length = 184772

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    gggcttcttctgggtggacag 183
              |||||||||||||||||||||
Sbjct: 115548 gggcttcttctgggtggacag 115528
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>gb|AY349011.1| Burkholderia cepacia phage Bcep22, complete genome
          Length = 63882

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 187  tggcgtcgacgccgcgctgat 207
            |||||||||||||||||||||
Sbjct: 5245 tggcgtcgacgccgcgctgat 5265
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 380    gtcgccgacttcccggagatc 400
              |||||||||||||||||||||
Sbjct: 121654 gtcgccgacttcccggagatc 121634
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>gb|AC093547.3| Drosophila melanogaster 3L BAC RP98-2K11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 142334

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 477   tgagcctgaacctgggcctgg 497
             |||||||||||||||||||||
Sbjct: 27270 tgagcctgaacctgggcctgg 27290
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>gb|AC023676.4| Drosophila melanogaster 3L BAC RP98-22C11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179613

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 477    tgagcctgaacctgggcctgg 497
              |||||||||||||||||||||
Sbjct: 153828 tgagcctgaacctgggcctgg 153848
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>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 220     gcgcttcgtgtatgcccactacgacgagc 248
               |||||||||| ||||| ||||||||||||
Sbjct: 1145380 gcgcttcgtgcatgccaactacgacgagc 1145408
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 37      cagagcaagcgatcggtacca 57
               |||||||||||||||||||||
Sbjct: 2607313 cagagcaagcgatcggtacca 2607333
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>gb|AC015604.5|AC015604 Homo sapiens, clone RP11-45D18, complete sequence
          Length = 172914

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 321   tctccggtgaggtagactggg 341
             |||||||||||||||||||||
Sbjct: 33669 tctccggtgaggtagactggg 33689
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>emb|AJ339750.1|HSA339750 Homo sapiens genomic sequence surrounding NotI site, clone NR1-EJ8R
          Length = 693

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 280 cgccaaagacctgctgctgcc 300
           |||||||||||||||||||||
Sbjct: 592 cgccaaagacctgctgctgcc 572
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>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft
              Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN
              (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10
          Length = 495475

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 556    gtacccggcctgcccgcggcc 576
              |||||||||||||||||||||
Sbjct: 448504 gtacccggcctgcccgcggcc 448524
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>gb|AE003597.4| Drosophila melanogaster chromosome 3L, section 78 of 83 of the complete
              sequence
          Length = 365612

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 477    tgagcctgaacctgggcctgg 497
              |||||||||||||||||||||
Sbjct: 333190 tgagcctgaacctgggcctgg 333210
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>dbj|AP000428.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1303B4
          Length = 173872

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 321   tctccggtgaggtagactggg 341
             |||||||||||||||||||||
Sbjct: 83026 tctccggtgaggtagactggg 83006
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 196    cgccgcgctgatggaggaggtgaag 220
              ||||||||||||||||||| |||||
Sbjct: 240289 cgccgcgctgatggaggagctgaag 240265
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>ref|NM_188968.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 505 ccgcgtcaaagacaccttcgcgccgccgttcgtcgg 540
           ||||||||  ||| ||||||| ||||||||||||||
Sbjct: 789 ccgcgtcagggacgccttcgccccgccgttcgtcgg 824



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 262 gttctacgcctcggacctcgccaa 285
           |||||||||||| |||||||||||
Sbjct: 510 gttctacgcctccgacctcgccaa 533
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>ref|XM_657162.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4650.2), mRNA
          Length = 3747

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 476  atgagcctgaacctgggcctggac 499
            ||||||||||||||| ||||||||
Sbjct: 2666 atgagcctgaacctgagcctggac 2689
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 306     aggaatccaaagccgtctcc 325
               ||||||||||||||||||||
Sbjct: 2425130 aggaatccaaagccgtctcc 2425149
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>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
             complete sequence
          Length = 163738

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cgtcgacgccgcgctgatgg 209
             ||||||||||||||||||||
Sbjct: 79206 cgtcgacgccgcgctgatgg 79187
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>gb|BC043788.1| Xenopus laevis osteoglycin, mRNA (cDNA clone MGC:53032
            IMAGE:5537299), complete cds
          Length = 4304

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 475  catgagcctgaacctgggcctgga 498
            |||||| |||||||||||||||||
Sbjct: 2508 catgaggctgaacctgggcctgga 2531
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 349    ctacttcatccggcaccgtcccgc 372
              ||||||||||| ||||||||||||
Sbjct: 342616 ctacttcatcctgcaccgtcccgc 342639
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 490     gggcctggacggcggccgcgtcaa 513
               ||||||||||||||||||| ||||
Sbjct: 3938394 gggcctggacggcggccgcatcaa 3938417
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    cctcgccaaagacctgctgc 296
              ||||||||||||||||||||
Sbjct: 870558 cctcgccaaagacctgctgc 870539
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 190      cgtcgacgccgcgctgatgg 209
                ||||||||||||||||||||
Sbjct: 21265732 cgtcgacgccgcgctgatgg 21265713
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 175      ggtggacagccatggcgtcg 194
                ||||||||||||||||||||
Sbjct: 24920747 ggtggacagccatggcgtcg 24920766



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 190      cgtcgacgccgcgctgatgg 209
                ||||||||||||||||||||
Sbjct: 11388560 cgtcgacgccgcgctgatgg 11388541
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 486     acctgggcctggacggcggc 505
               ||||||||||||||||||||
Sbjct: 7098618 acctgggcctggacggcggc 7098599
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>ref|XM_222251.3| PREDICTED: Rattus norvegicus E1A binding protein p400 (predicted)
            (Ep400_predicted), mRNA
          Length = 11061

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 197  gccgcgctgatggaggaggtgaag 220
            |||| |||||||||||||||||||
Sbjct: 4882 gccgggctgatggaggaggtgaag 4859
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>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0530H05
          Length = 145952

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   ggtggacagccatggcgtcg 194
             ||||||||||||||||||||
Sbjct: 15302 ggtggacagccatggcgtcg 15321
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>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1386G10
          Length = 121827

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cgtcgacgccgcgctgatgg 209
             ||||||||||||||||||||
Sbjct: 76269 cgtcgacgccgcgctgatgg 76250
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>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1102E12
          Length = 155692

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 149   gcctgcaaggactggggcttcttc 172
             |||||| |||||||||||||||||
Sbjct: 24829 gcctgccaggactggggcttcttc 24852
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>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0072A21
          Length = 158287

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    ggtggacagccatggcgtcg 194
              ||||||||||||||||||||
Sbjct: 131830 ggtggacagccatggcgtcg 131849
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>dbj|AK072222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013165K20, full
           insert sequence
          Length = 1405

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 149 gcctgcaaggactggggcttcttc 172
           |||||| |||||||||||||||||
Sbjct: 244 gcctgccaggactggggcttcttc 267
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 277     cctcgccaaagacctgctgc 296
               ||||||||||||||||||||
Sbjct: 2074306 cctcgccaaagacctgctgc 2074325


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,502,853
Number of Sequences: 3902068
Number of extensions: 3502853
Number of successful extensions: 73130
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72255
Number of HSP's gapped (non-prelim): 868
length of query: 577
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 554
effective length of database: 17,143,297,704
effective search space: 9497386928016
effective search space used: 9497386928016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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