>gb|DQ244055.1| Hordeum vulgare reticulon mRNA, complete cds
          Length = 615

 Score =  151 bits (76), Expect = 2e-33
 Identities = 82/84 (97%)
 Strand = Plus / Plus

                                                                       
Query: 283 cgaggacacctccgtgcacaaggtgcttggtggcggcaaaactgctgatgtactgttatg 342
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15  cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 74

                                   
Query: 343 gaaggacaagaaaacaactgctgt 366
           |||| |||||||||||||||||||
Sbjct: 75  gaagaacaagaaaacaactgctgt 98



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 atggccgatccagccgagga 120
           ||||||||||||||||||||
Sbjct: 1   atggccgatccagccgagga 20

>dbj|AK073583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051P18, full
           insert sequence
          Length = 1147

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                       
Query: 266 gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggcaaaact 325
           ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||||
Sbjct: 238 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaact 297

                                        
Query: 326 gctgatgtactgttatggaaggacaagaa 354
           ||||||||||| |||||||| ||||||||
Sbjct: 298 gctgatgtactattatggaaagacaagaa 326

>gb|AY104742.1| Zea mays PCO152525 mRNA sequence
          Length = 1163

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 93/110 (84%)
 Strand = Plus / Plus

                                                                       
Query: 257 aggtcccgtgggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggc 316
           |||||||| || |||||||| || || |||||||| |||||||||||    ||||| |||
Sbjct: 236 aggtcccggggattcaggcttcttggagaggacacttccgtgcacaaatcccttgggggc 295

                                                             
Query: 317 ggcaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgt 366
           || ||||||||||| || ||||||||||| |||||||||||  |||||||
Sbjct: 296 ggtaaaactgctgacgttctgttatggaaagacaagaaaacttctgctgt 345

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                          
Query: 266      gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggcaaaa 323
                ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||
Sbjct: 17619068 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 17619125



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 324      ctgctgatgtactgttatggaaggacaagaa 354
                ||||||||||||| |||||||| ||||||||
Sbjct: 17621503 ctgctgatgtactattatggaaagacaagaa 17621533

>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0564B04
          Length = 64684

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                       
Query: 266   gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggcaaaa 323
             ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||
Sbjct: 45416 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 45473



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 324   ctgctgatgtactgttatggaaggacaagaa 354
             ||||||||||||| |||||||| ||||||||
Sbjct: 47851 ctgctgatgtactattatggaaagacaagaa 47881

>gb|AY105560.1| Zea mays PCO120447 mRNA sequence
          Length = 1191

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 320 aaaactgctgatgtactgttatggaaggacaagaa 354
           ||||||||||||||||| || ||||| ||||||||
Sbjct: 261 aaaactgctgatgtacttttgtggaaagacaagaa 295

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 205     cgcctcgccggagaaggcggcc 226
               ||||||||||||||||||||||
Sbjct: 1027165 cgcctcgccggagaaggcggcc 1027144

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 205    cgcctcgccggagaaggcggcc 226
              ||||||||||||||||||||||
Sbjct: 700139 cgcctcgccggagaaggcggcc 700118

>ref|XM_759893.1| Theileria parva strain Muguga hypothetical protein (TP02_0420)
            partial mRNA
          Length = 5232

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 7    cacacttccaccacacacact 27
            |||||||||||||||||||||
Sbjct: 2082 cacacttccaccacacacact 2062

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 229     gcccgcgtctgcgccggacaccacggtcaggtc 261
               ||||||||| ||| ||||||| |||||||||||
Sbjct: 2094902 gcccgcgtccgcgtcggacacgacggtcaggtc 2094934

>ref|XM_428325.1| PREDICTED: Gallus gallus similar to Ac1147 (LOC430774), partial
           mRNA
          Length = 1168

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 gggcagcgccgacgcctcgc 212
           ||||||||||||||||||||
Sbjct: 192 gggcagcgccgacgcctcgc 173

>gb|AC004877.1| Homo sapiens PAC clone RP4-751H13 from 7, complete sequence
          Length = 128361

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   aggcggccccgcccgcgtct 238
             ||||||||||||||||||||
Sbjct: 28377 aggcggccccgcccgcgtct 28358

>emb|CR733014.1| Gallus gallus finished cDNA, clone ChEST603k21
          Length = 791

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 gggcagcgccgacgcctcgc 212
           ||||||||||||||||||||
Sbjct: 291 gggcagcgccgacgcctcgc 272

>gb|DQ067486.1|DQ067486S1 Lemur catta msh homeobox 1-like protein (MSX1) gene, exon 1
          Length = 1600

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  gccggagaaggcggccccgc 230
            ||||||||||||||||||||
Sbjct: 1351 gccggagaaggcggccccgc 1370

>ref|NM_064862.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family
           member (rps-29) (rps-29) mRNA, complete cds
          Length = 321

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 231 ccgcgtctgcgccggacaccacgg 254
           |||||||||||| |||||||||||
Sbjct: 77  ccgcgtctgcgctggacaccacgg 100

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 199      cgccgacgcctcgccggaga 218
                ||||||||||||||||||||
Sbjct: 25454204 cgccgacgcctcgccggaga 25454185

>gb|AC155890.2| Medicago truncatula chromosome 7 BAC clone mth2-49p3, complete sequence
          Length = 127058

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     acacttccaccacacacact 27
             ||||||||||||||||||||
Sbjct: 19792 acacttccaccacacacact 19773

>gb|AC087415.1|AC087415 Caenorhabditis briggsae cosmid CB005O21, complete sequence
          Length = 68731

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   ccgcgtctgcgccggacaccacgg 254
             |||||||||||| |||||||||||
Sbjct: 63580 ccgcgtctgcgctggacaccacgg 63603

>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0711H09
          Length = 185858

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   cgccgacgcctcgccggaga 218
             ||||||||||||||||||||
Sbjct: 85520 cgccgacgcctcgccggaga 85501

>gb|U80953.1| Caenorhabditis elegans cosmid B0412, complete sequence
          Length = 33975

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 231  ccgcgtctgcgccggacaccacgg 254
            |||||||||||| |||||||||||
Sbjct: 5647 ccgcgtctgcgctggacaccacgg 5670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,119,040
Number of Sequences: 3902068
Number of extensions: 2119040
Number of successful extensions: 39778
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39566
Number of HSP's gapped (non-prelim): 211
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)