Clone Name | bart29e12 |
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Clone Library Name | barley_pub |
>gb|DQ244055.1| Hordeum vulgare reticulon mRNA, complete cds Length = 615 Score = 151 bits (76), Expect = 2e-33 Identities = 82/84 (97%) Strand = Plus / Plus Query: 283 cgaggacacctccgtgcacaaggtgcttggtggcggcaaaactgctgatgtactgttatg 342 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 15 cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 74 Query: 343 gaaggacaagaaaacaactgctgt 366 |||| ||||||||||||||||||| Sbjct: 75 gaagaacaagaaaacaactgctgt 98 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 atggccgatccagccgagga 120 |||||||||||||||||||| Sbjct: 1 atggccgatccagccgagga 20
>dbj|AK073583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051P18, full insert sequence Length = 1147 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 266 gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggcaaaact 325 ||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 238 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaact 297 Query: 326 gctgatgtactgttatggaaggacaagaa 354 ||||||||||| |||||||| |||||||| Sbjct: 298 gctgatgtactattatggaaagacaagaa 326
>gb|AY104742.1| Zea mays PCO152525 mRNA sequence Length = 1163 Score = 83.8 bits (42), Expect = 4e-13 Identities = 93/110 (84%) Strand = Plus / Plus Query: 257 aggtcccgtgggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggc 316 |||||||| || |||||||| || || |||||||| ||||||||||| ||||| ||| Sbjct: 236 aggtcccggggattcaggcttcttggagaggacacttccgtgcacaaatcccttgggggc 295 Query: 317 ggcaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgt 366 || ||||||||||| || ||||||||||| ||||||||||| ||||||| Sbjct: 296 ggtaaaactgctgacgttctgttatggaaagacaagaaaacttctgctgt 345
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 9e-11 Identities = 53/58 (91%) Strand = Plus / Plus Query: 266 gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggcaaaa 323 ||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||| Sbjct: 17619068 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 17619125 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Plus Query: 324 ctgctgatgtactgttatggaaggacaagaa 354 ||||||||||||| |||||||| |||||||| Sbjct: 17621503 ctgctgatgtactattatggaaagacaagaa 17621533
>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0564B04 Length = 64684 Score = 75.8 bits (38), Expect = 9e-11 Identities = 53/58 (91%) Strand = Plus / Plus Query: 266 gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggcaaaa 323 ||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||| Sbjct: 45416 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 45473 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Plus Query: 324 ctgctgatgtactgttatggaaggacaagaa 354 ||||||||||||| |||||||| |||||||| Sbjct: 47851 ctgctgatgtactattatggaaagacaagaa 47881
>gb|AY105560.1| Zea mays PCO120447 mRNA sequence Length = 1191 Score = 46.1 bits (23), Expect = 0.079 Identities = 32/35 (91%) Strand = Plus / Plus Query: 320 aaaactgctgatgtactgttatggaaggacaagaa 354 ||||||||||||||||| || ||||| |||||||| Sbjct: 261 aaaactgctgatgtacttttgtggaaagacaagaa 295
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 cgcctcgccggagaaggcggcc 226 |||||||||||||||||||||| Sbjct: 1027165 cgcctcgccggagaaggcggcc 1027144
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 cgcctcgccggagaaggcggcc 226 |||||||||||||||||||||| Sbjct: 700139 cgcctcgccggagaaggcggcc 700118
>ref|XM_759893.1| Theileria parva strain Muguga hypothetical protein (TP02_0420) partial mRNA Length = 5232 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 cacacttccaccacacacact 27 ||||||||||||||||||||| Sbjct: 2082 cacacttccaccacacacact 2062
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 229 gcccgcgtctgcgccggacaccacggtcaggtc 261 ||||||||| ||| ||||||| ||||||||||| Sbjct: 2094902 gcccgcgtccgcgtcggacacgacggtcaggtc 2094934
>ref|XM_428325.1| PREDICTED: Gallus gallus similar to Ac1147 (LOC430774), partial mRNA Length = 1168 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gggcagcgccgacgcctcgc 212 |||||||||||||||||||| Sbjct: 192 gggcagcgccgacgcctcgc 173
>gb|AC004877.1| Homo sapiens PAC clone RP4-751H13 from 7, complete sequence Length = 128361 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aggcggccccgcccgcgtct 238 |||||||||||||||||||| Sbjct: 28377 aggcggccccgcccgcgtct 28358
>emb|CR733014.1| Gallus gallus finished cDNA, clone ChEST603k21 Length = 791 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gggcagcgccgacgcctcgc 212 |||||||||||||||||||| Sbjct: 291 gggcagcgccgacgcctcgc 272
>gb|DQ067486.1|DQ067486S1 Lemur catta msh homeobox 1-like protein (MSX1) gene, exon 1 Length = 1600 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gccggagaaggcggccccgc 230 |||||||||||||||||||| Sbjct: 1351 gccggagaaggcggccccgc 1370
>ref|NM_064862.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-29) (rps-29) mRNA, complete cds Length = 321 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 ccgcgtctgcgccggacaccacgg 254 |||||||||||| ||||||||||| Sbjct: 77 ccgcgtctgcgctggacaccacgg 100
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cgccgacgcctcgccggaga 218 |||||||||||||||||||| Sbjct: 25454204 cgccgacgcctcgccggaga 25454185
>gb|AC155890.2| Medicago truncatula chromosome 7 BAC clone mth2-49p3, complete sequence Length = 127058 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 acacttccaccacacacact 27 |||||||||||||||||||| Sbjct: 19792 acacttccaccacacacact 19773
>gb|AC087415.1|AC087415 Caenorhabditis briggsae cosmid CB005O21, complete sequence Length = 68731 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 ccgcgtctgcgccggacaccacgg 254 |||||||||||| ||||||||||| Sbjct: 63580 ccgcgtctgcgctggacaccacgg 63603
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0711H09 Length = 185858 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cgccgacgcctcgccggaga 218 |||||||||||||||||||| Sbjct: 85520 cgccgacgcctcgccggaga 85501
>gb|U80953.1| Caenorhabditis elegans cosmid B0412, complete sequence Length = 33975 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 ccgcgtctgcgccggacaccacgg 254 |||||||||||| ||||||||||| Sbjct: 5647 ccgcgtctgcgctggacaccacgg 5670 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,119,040 Number of Sequences: 3902068 Number of extensions: 2119040 Number of successful extensions: 39778 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39566 Number of HSP's gapped (non-prelim): 211 length of query: 366 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 344 effective length of database: 17,147,199,772 effective search space: 5898636721568 effective search space used: 5898636721568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)