Clone Information

BLAST Search Result

Clone Name	bart29e05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GP156_RAT (Q8K451) Probable G-protein coupled receptor 156 (GABA...	33	0.69
2	ATN5_YEAST (Q12691) Sodium transport ATPase 5 (EC 3.6.3.7)	32	1.2
3	ATN2_YEAST (Q01896) Sodium transport ATPase 2 (EC 3.6.3.7)	32	1.2
4	ATN1_YEAST (P13587) Sodium transport ATPase 1 (EC 3.6.3.7)	32	1.2
5	PCL_DROME (Q24459) Polycomb protein Pcl (Polycomblike protein)	31	2.0
6	CU093_HUMAN (P59091) Protein C21orf93	31	2.0
7	GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein...	31	2.0
8	YBAY_ECOLI (P77717) Hypothetical lipoprotein ybaY precursor	30	3.4
9	CCMA2_SALPA (Q5PKT6) Cytochrome c biogenesis ATP-binding export ...	30	3.4
10	CCMA1_SALPA (Q5PI55) Cytochrome c biogenesis ATP-binding export ...	30	3.4
11	KCNN1_MOUSE (Q9EQR3) Small conductance calcium-activated potassi...	30	4.5
12	LZTS2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2 ...	30	4.5
13	KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-ass...	30	4.5
14	KPBB_DROME (Q9VLS1) Probable phosphorylase b kinase beta regulat...	30	5.9
15	HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant prot...	30	5.9
16	HIS5_SALTY (P0A1R4) Imidazole glycerol phosphate synthase subuni...	30	5.9
17	HIS5_SALTI (P0A1R5) Imidazole glycerol phosphate synthase subuni...	30	5.9
18	HIS5_SALPA (Q5PDP6) Imidazole glycerol phosphate synthase subuni...	30	5.9
19	HIS5_SALCH (Q57MS0) Imidazole glycerol phosphate synthase subuni...	30	5.9
20	UL31_EBV (P03183) Protein BFLF2	30	5.9
21	UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (E...	30	5.9
22	ANPRA_HUMAN (P16066) Atrial natriuretic peptide receptor A precu...	30	5.9
23	ATPA_ACEWO (P50000) ATP synthase alpha chain, sodium ion specifi...	29	7.7
24	CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 ...	29	7.7
25	YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ...	29	7.7
26	KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-ass...	29	7.7
27	SEH1L_HUMAN (Q96EE3) Nucleoporin SEH1-like (SEC13-like protein)	29	10.0
28	HIS5_SHISS (Q3Z0G2) Imidazole glycerol phosphate synthase subuni...	29	10.0
29	HIS5_SHIFL (Q83KJ5) Imidazole glycerol phosphate synthase subuni...	29	10.0
30	HIS5_SHIDS (Q32EF2) Imidazole glycerol phosphate synthase subuni...	29	10.0
31	HIS5_SHIBS (Q323I9) Imidazole glycerol phosphate synthase subuni...	29	10.0
32	HIS5_ECOLI (P60595) Imidazole glycerol phosphate synthase subuni...	29	10.0
33	HIS5_ECOL6 (P60596) Imidazole glycerol phosphate synthase subuni...	29	10.0
34	HIS5_ECO57 (P58237) Imidazole glycerol phosphate synthase subuni...	29	10.0
35	CHSD_EMENI (P78611) Chitin synthase D (EC 2.4.1.16) (Chitin-UDP ...	29	10.0
36	TLL_DROVI (O16845) Protein tailless	29	10.0
37	CCMA_SALTI (P61377) Cytochrome c biogenesis ATP-binding export p...	29	10.0
38	CCMA2_SALTY (P61378) Cytochrome c biogenesis ATP-binding export ...	29	10.0
39	CCMA1_SALTY (Q8ZKZ9) Cytochrome c biogenesis ATP-binding export ...	29	10.0

>GP156_RAT (Q8K451) Probable G-protein coupled receptor 156 (GABAB-related|
           G-protein coupled receptor)
          Length = 792

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 41  GETIAYPQQPWSSSHTLPCASCWCLSSLPTSQRRRQPACL--SGKPSSKS 184
           G ++A+P+QP S+S     ++  CLSS P   R+RQP  L   G PS  S
Sbjct: 669 GYSVAFPRQP-SASAPAQSSTAPCLSSXPALPRQRQPLPLLSPGCPSLSS 717

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>ATN5_YEAST (Q12691) Sodium transport ATPase 5 (EC 3.6.3.7)|
          Length = 1091

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 358  RSVWESECLAVSTVNTCALVFSWKGLEVFDGSNSVWHTH-DTESVDNNFLKTL 513
            R V+ S   A +T+  CAL+ +W   EV D   S +  H DT+S    F +++
Sbjct: 937  RDVYRSRSAAFATMTWCALILAW---EVVDMRRSFFRMHPDTDSPVKEFFRSI 986

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>ATN2_YEAST (Q01896) Sodium transport ATPase 2 (EC 3.6.3.7)|
          Length = 1091

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 358  RSVWESECLAVSTVNTCALVFSWKGLEVFDGSNSVWHTH-DTESVDNNFLKTL 513
            R V+ S   A +T+  CAL+ +W   EV D   S +  H DT+S    F +++
Sbjct: 937  RDVYRSRSAAFATMTWCALILAW---EVVDMRRSFFRMHPDTDSPVKEFFRSI 986

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>ATN1_YEAST (P13587) Sodium transport ATPase 1 (EC 3.6.3.7)|
          Length = 1091

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 358  RSVWESECLAVSTVNTCALVFSWKGLEVFDGSNSVWHTH-DTESVDNNFLKTL 513
            R V+ S   A +T+  CAL+ +W   EV D   S +  H DT+S    F +++
Sbjct: 937  RDVYRSRSAAFATMTWCALILAW---EVVDMRRSFFRMHPDTDSPVKEFFRSI 986

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>PCL_DROME (Q24459) Polycomb protein Pcl (Polycomblike protein)|
          Length = 1043

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = -3

Query: 491 STDSVSCVCHTELLPSNTSSPFHENTSAQVFTVLTAKHSDSHTLRPSAPGSVVSRIST*Q 312
           + DS SC        S+ SS  +  T+     V+     DS T  P  P +    +S+  
Sbjct: 239 TADSSSCSS------SSVSSSSYSGTATTSAAVVIVDEPDSTTTTPQTPPTTPEAMSSPG 292

Query: 311 KSAPRPPAPGT 279
           KS+P PP   T
Sbjct: 293 KSSPSPPLLAT 303

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>CU093_HUMAN (P59091) Protein C21orf93|
          Length = 139

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 21  PHTHKLLGRPSHT-HSSHGARLI-HCHVPLAGVCPP 122
           PHTH L  RPSH  H +   ++    HVP  G+C P
Sbjct: 87  PHTHGLPARPSHVRHQTEPVQVASRWHVPSDGLCRP 122

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>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core|
           protein p15; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 28/153 (18%)
 Frame = +1

Query: 103 LLVFVLPSHVAATAPTGMLERETKQQILASIP-PHWQENPVL----------------FL 231
           LL   +P +     P  +L  E++Q +L   P PH   NP+L                  
Sbjct: 110 LLALEVPKNRTLDPPKPVLPDESQQDLLFQDPLPHPPHNPLLEPPPYNSPSPPVLSPVSP 169

Query: 232 TSPSGKYAAHFMRSQTVPGAGGLGADFCYVEILDTTEP-----------GAEGRSVWESE 378
           T+PS    +  + S T P +          E+   T P           G +G S W+S 
Sbjct: 170 TTPSAPTPSSLVSSSTPPSSPAPP------ELTPRTPPQTPRLRLRRAEGQDGPSTWQSS 223

Query: 379 CLAVSTVNTCALVFSWKGLEVFDGSNSVWHTHD 477
              + TVN     + +   ++++     W TH+
Sbjct: 224 LFPLRTVNRTIQYWPFSASDLYN-----WKTHN 251

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>YBAY_ECOLI (P77717) Hypothetical lipoprotein ybaY precursor|
          Length = 190

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 425 HENTSAQVFTVLTAKHSDSHTLRPSAPGSVVSRIST*QKSAPRPPAPGTVWLRMKCA 255
           H  +   V   L A    S  ++  AP +  S  +T Q +  +P   GTVW+R K A
Sbjct: 5   HMASGLAVAIALAACADKSADIQTPAPAANTSISATQQPAIQQPNVSGTVWIRQKVA 61

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>CCMA2_SALPA (Q5PKT6) Cytochrome c biogenesis ATP-binding export protein ccmA 2|
           (EC 3.6.3.41) (Heme exporter protein A 2)
          Length = 205

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = -2

Query: 390 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 232
           HR  L + H P ++ RL   ENL     G  A    A A+ GLA  E   V R+ AG++R
Sbjct: 73  HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVARLSAGQQR 132

Query: 231 Q 229
           +
Sbjct: 133 R 133

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>CCMA1_SALPA (Q5PI55) Cytochrome c biogenesis ATP-binding export protein ccmA 1|
           (EC 3.6.3.41) (Heme exporter protein A 1)
          Length = 205

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = -2

Query: 390 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 232
           HR  L + H P ++ RL   ENL     G  A    A A+ GLA  E   V R+ AG++R
Sbjct: 73  HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVARLSAGQQR 132

Query: 231 Q 229
           +
Sbjct: 133 R 133

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>KCNN1_MOUSE (Q9EQR3) Small conductance calcium-activated potassium channel|
           protein 1 (SK1)
          Length = 580

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +3

Query: 69  HGARLIHCHV-PLAGVCPPFPRRSDGANRHA*AGNQAANLGEHPAALAGEP 218
           H   L+  H  P    C P PRR    + H+  G+    LG  P  L  EP
Sbjct: 18  HSEALLRNHAGPQRACCTPSPRRQVAMSSHSHNGSVGQPLGSGPGFLGWEP 68

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>LZTS2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2 (Protein|
           LAPSER1)
          Length = 669

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = -2

Query: 441 HLQPFPREHERAGVHGAHRQALRLPHAPPLRARLGGVENLDVAEVGSEAAGARHGLAAHE 262
           H Q   +  E+AG   A    LR P  PP  A    +   D A+V   AAG    L A +
Sbjct: 516 HRQEAEQLREKAGQLDAEAAGLREPPVPPATADPFLLAESDEAKVQRAAAGVGGSLRA-Q 574

Query: 261 VRRVLAGRRRQEQHG 217
           V R+    +R+ + G
Sbjct: 575 VERLRVELQRERRRG 589

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>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein|
           5.9) (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 550 CRGCACHPRPRAAGF*GSCCRLTPCRVCATQS 455
           C+   C P   ++G   SCC+ + C+ C +QS
Sbjct: 126 CQSSCCKPCCSSSGCGSSCCQSSCCKPCCSQS 157

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>KPBB_DROME (Q9VLS1) Probable phosphorylase b kinase beta regulatory chain|
           (Phosphorylase kinase beta subunit)
          Length = 1093

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 509 VLRKLLSTDSVSCVCHTELLPSNTSSPFHENTSAQVFTVLTAKHSDSHTLR 357
           ++  L STDS+ C+C    +  N   P  E     V T LT  +  + +LR
Sbjct: 710 IINALRSTDSIYCLCQLWGIILNREGPHFEVNGLNVNTALTQLYHRAGSLR 760

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>HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant protein 1 precursor|
          Length = 1802

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = -3

Query: 542  MRMSPSSTSCRVLRKLLSTDSVSCVCHTELLPSN-----TSSPFHENTSAQVFTVLTAKH 378
            M  + SS+   ++  L S+ S S +   E  PS      TSS +   +SA  F   + ++
Sbjct: 815  MSSTSSSSPYDIVYSLSSSASRSSIATYEFSPSPSTSLPTSSTYTYFSSAYAFEFSSERY 874

Query: 377  SDSHTLRPSAPGSVVSRIS 321
            S + T+ P+   S +SRI+
Sbjct: 875  STTSTIAPTQIHSTLSRIT 893

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>HIS5_SALTY (P0A1R4) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGV--LLPVRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E  GV  L  + +D  +    G PL H GW R
Sbjct: 82  LLGRRSEETRGVDLLNIIEQDVPKMTDFGLPLPHMGWNR 120

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>HIS5_SALTI (P0A1R5) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGV--LLPVRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E  GV  L  + +D  +    G PL H GW R
Sbjct: 82  LLGRRSEETRGVDLLNIIEQDVPKMTDFGLPLPHMGWNR 120

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>HIS5_SALPA (Q5PDP6) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGV--LLPVRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E  GV  L  + +D  +    G PL H GW R
Sbjct: 82  LLGRRSEETRGVDLLNIIEQDVPKMTDFGLPLPHMGWNR 120

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>HIS5_SALCH (Q57MS0) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGV--LLPVRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E  GV  L  + +D  +    G PL H GW R
Sbjct: 82  LLGRRSEETRGVDLLNIIEQDVPKMTDFGLPLPHMGWNR 120

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>UL31_EBV (P03183) Protein BFLF2|
          Length = 318

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 423 VERAGGVRREQLCVAHTRHGVSRQQLPQNPAARG 524
           +ER G V R  +C  HTRHGV R         RG
Sbjct: 58  MERVGSVARS-ICSRHTRHGVDRSHFSLRDFFRG 90

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>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 42)
            (Ubiquitin-specific-processing protease 42)
            (Deubiquitinating enzyme 42)
          Length = 1325

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -2

Query: 423  REHERAGVHGAHRQALRLPHAPPLRARLG--GVENLDVAEVGSEAAGARHGLAAHEVR 256
            REHERAG+H         PH    R R G       +     S  AGA H LA H  R
Sbjct: 1081 REHERAGLH-------ERPHKDHNRGRRGCEPARERERHRPSSPRAGAPHALAPHPDR 1131

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>ANPRA_HUMAN (P16066) Atrial natriuretic peptide receptor A precursor (ANP-A)|
           (ANPRA) (GC-A) (Guanylate cyclase) (EC 4.6.1.2) (NPR-A)
           (Atrial natriuretic peptide A-type receptor)
          Length = 1061

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
 Frame = +1

Query: 184 LASIPPHWQENPVLFL-------TSPSGKYAAHFMRSQTVPGAGGLG 303
           LA++   W+ NP +FL        +P G++ AH+       GA  LG
Sbjct: 99  LAAVDLKWEHNPAVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPALG 145

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>ATPA_ACEWO (P50000) ATP synthase alpha chain, sodium ion specific (EC|
           3.6.3.15) (Na(+)-translocating ATPase alpha chain)
          Length = 501

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 458 ELLPSNTSSPFHENTSAQVFTVLTAKHSDSHTLRPSAPGSVVSRIST*QKSAPRPPAPGT 279
           +L P +  +P+   T A+ F     K    H  RPS  G + S +   ++   R P PG 
Sbjct: 230 QLAPLHNIAPYSGVTMAEYFMKGPTKRITVHQGRPSKHGCLPSLVFDPRRPPGREPYPGD 289

Query: 278 VW 273
           V+
Sbjct: 290 VF 291

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>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD2) (CHD-2)
          Length = 1739

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 426  ERAGGVRREQLCVAHTRHGVSRQQLPQNPAARGRG*HAHPR 548
            E +G  R   +  +HT H +  Q+ P  PA+ G   H HPR
Sbjct: 1582 EASGSSRDSLISQSHTSHNLHPQK-PHLPASHGPQMHGHPR 1621

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>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic|
           region
          Length = 1140

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 533 SPSSTSCRVLRKLLSTDSVSCVCHTELLPSN-TSSPFHENTSAQVFTVLTAKHSDSHTLR 357
           +PSSTS  V  ++ ST S S      L  S+  SS    +TS+ V +   A  S S ++ 
Sbjct: 348 APSSTSSSVSSEISSTTSSSVSSEAPLATSSVVSSEAPSSTSSSVSS--EAPSSTSSSVS 405

Query: 356 PSAPGSVVSRIST 318
             AP S  S +S+
Sbjct: 406 SEAPSSTSSSVSS 418

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>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein|
           5.4) (Ultrahigh sulfur keratin-associated protein 5.4)
          Length = 288

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 550 CRGCACHPRPRAAGF*GSCCRLTPCRVCATQS 455
           C+   C P   ++G   SCC+ + C  C +QS
Sbjct: 245 CQSSCCKPCCSSSGCGSSCCQSSCCNPCCSQS 276

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>SEH1L_HUMAN (Q96EE3) Nucleoporin SEH1-like (SEC13-like protein)|
          Length = 421

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 71  WSSSHTLPCA-SCWCLSSLPTSQRRRQPACLSGKPSS 178
           WS  H + C  SC C+S  P+S R   P    G   S
Sbjct: 153 WSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDS 189

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>HIS5_SHISS (Q3Z0G2) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGVLLP--VRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E +GV L   +  D  +    G PL H GW R
Sbjct: 82  LLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR 120

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>HIS5_SHIFL (Q83KJ5) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGVLLP--VRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E +GV L   +  D  +    G PL H GW R
Sbjct: 82  LLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR 120

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>HIS5_SHIDS (Q32EF2) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGVLLP--VRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E +GV L   +  D  +    G PL H GW R
Sbjct: 82  LLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR 120

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>HIS5_SHIBS (Q323I9) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGVLLP--VRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E +GV L   +  D  +    G PL H GW R
Sbjct: 82  LLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR 120

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>HIS5_ECOLI (P60595) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGVLLP--VRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E +GV L   +  D  +    G PL H GW R
Sbjct: 82  LLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR 120

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>HIS5_ECOL6 (P60596) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGVLLP--VRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E +GV L   +  D  +    G PL H GW R
Sbjct: 82  LLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR 120

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>HIS5_ECO57 (P58237) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 196

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 249 LAGRRRQEQHGVLLP--VRRDARQDLLLGFPLKHAGWRR 139
           L GRR +E +GV L   +  D  +    G PL H GW R
Sbjct: 82  LLGRRSEESNGVDLLGIIDEDVPKMTDFGLPLPHMGWNR 120

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>CHSD_EMENI (P78611) Chitin synthase D (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase D) (Class-V chitin
           synthase D)
          Length = 1184

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = -3

Query: 260 CAAYLPDGDVRNNT------GFSCQCGGMLAKICCLVSRSSMPVGAVAATWEGRTNTSKR 99
           C A+  DG    NT      G++C   G   K    +  S    G V  TWE   NTS R
Sbjct: 339 CHAFNQDGSSEPNTTVSYYNGWACHTSGSARKSFYSLKNS----GDVYFTWEDTKNTS-R 393

Query: 98  HMAMYETSSMAAVGMRW 48
            +A+Y  + +    + W
Sbjct: 394 KLAVYSGNVLDLNLLNW 410

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>TLL_DROVI (O16845) Protein tailless|
          Length = 450

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 119 RTNTSKRHMAMYETSSMAAVGMRWSPQQLM 30
           R +T +RHMAMY+ + M A  M   P +++
Sbjct: 113 RNSTLRRHMAMYKDAMMGAAEMPQIPPEIL 142

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>CCMA_SALTI (P61377) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 205

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = -2

Query: 390 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 232
           HR  L + H P ++ RL   ENL     G  A    A A+ GLA  E   V ++ AG++R
Sbjct: 73  HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVAQLSAGQQR 132

Query: 231 Q 229
           +
Sbjct: 133 R 133

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>CCMA2_SALTY (P61378) Cytochrome c biogenesis ATP-binding export protein ccmA 2|
           (EC 3.6.3.41) (Heme exporter protein A 2)
          Length = 205

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = -2

Query: 390 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 232
           HR  L + H P ++ RL   ENL     G  A    A A+ GLA  E   V ++ AG++R
Sbjct: 73  HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVAQLSAGQQR 132

Query: 231 Q 229
           +
Sbjct: 133 R 133

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>CCMA1_SALTY (Q8ZKZ9) Cytochrome c biogenesis ATP-binding export protein ccmA 1|
           (EC 3.6.3.41) (Heme exporter protein A 1)
          Length = 205

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = -2

Query: 390 HRQALRLPHAPPLRARLGGVENLDVAEVGSEA----AGARHGLAAHE---VRRVLAGRRR 232
           HR  L + H P ++ RL   ENL     G  A    A A+ GLA  E   V ++ AG++R
Sbjct: 73  HRSLLWIGHQPGIKTRLTARENLHFFHPGDGARLPEALAQAGLAGFEDVPVAQLSAGQQR 132

Query: 231 Q 229
           +
Sbjct: 133 R 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,127,340
Number of Sequences: 219361
Number of extensions: 1873950
Number of successful extensions: 6710
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 6340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6701
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result