ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482256.1| Oryza sativa (japonica cultivar-group), mRNA 133 6e-28
2dbj|AK071873.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 6e-28
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5emb|CR555306.1| Azoarcus sp. EbN1 complete genome 50 0.007
6dbj|AK101153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
7emb|AL683814.10| Mouse DNA sequence from clone RP23-165L23 on ch... 42 1.8
8gb|AC117247.4| Mus musculus BAC clone RP24-323L24 from chromosom... 40 7.1
9gb|AC160400.12| Mus musculus 6 BAC RP23-321M22 (Roswell Park Can... 40 7.1
10gb|AC118606.13| Mus musculus chromosome 5, clone RP24-69F9, comp... 40 7.1
11gb|AC117200.3| Mus musculus BAC clone RP23-164N7 from 3, complet... 40 7.1
12dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 7.1
13dbj|AB026639.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.1
14emb|CT571245.12| Mouse DNA sequence from clone RP23-2N7 on chrom... 40 7.1
15emb|CR974423.21| Mouse DNA sequence from clone RP23-182F9 on chr... 40 7.1
16gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, com... 40 7.1
17gb|AC104324.21| Mus musculus strain C57BL/6J chromosome 6 clone ... 40 7.1
18emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, c... 40 7.1 
>ref|XM_482256.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1599

 Score =  133 bits (67), Expect = 6e-28
 Identities = 160/191 (83%)
 Strand = Plus / Plus

                                                                       
Query: 326 aggagatctagctccgaggtgcctgcttcggagcaaatgaatcttattagacaactacga 385
           |||||||  |||||||| || ||||| ||||||||||||||||| || | ||| ||  | 
Sbjct: 373 aggagattcagctccgaagttcctgcgtcggagcaaatgaatctcatcaaacagctgagg 432

                                                                       
Query: 386 gaaagaacttgtgctccgatcaaagatgtcaaggcttcgctagttacttgcaactgggat 445
           || || ||  | ||||| ||||||||||| ||||||||  |||||| |||||||||||||
Sbjct: 433 gagaggacgagcgctccaatcaaagatgtgaaggcttccttagttagttgcaactgggat 492

                                                                       
Query: 446 attgaggatgcacagaaggatctaaggaaaagaggggtgatatctgctgccaaaaagtct 505
           ||||| | |||||||||||| |||||||| ||||||||| |   ||||||||||||||||
Sbjct: 493 attgatgttgcacagaaggacctaaggaagagaggggtggttcttgctgccaaaaagtct 552

                      
Query: 506 tcaaggactgc 516
           ||| |||||||
Sbjct: 553 tcacggactgc 563
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>dbj|AK071873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123H16, full
           insert sequence
          Length = 1599

 Score =  133 bits (67), Expect = 6e-28
 Identities = 160/191 (83%)
 Strand = Plus / Plus

                                                                       
Query: 326 aggagatctagctccgaggtgcctgcttcggagcaaatgaatcttattagacaactacga 385
           |||||||  |||||||| || ||||| ||||||||||||||||| || | ||| ||  | 
Sbjct: 373 aggagattcagctccgaagttcctgcgtcggagcaaatgaatctcatcaaacagctgagg 432

                                                                       
Query: 386 gaaagaacttgtgctccgatcaaagatgtcaaggcttcgctagttacttgcaactgggat 445
           || || ||  | ||||| ||||||||||| ||||||||  |||||| |||||||||||||
Sbjct: 433 gagaggacgagcgctccaatcaaagatgtgaaggcttccttagttagttgcaactgggat 492

                                                                       
Query: 446 attgaggatgcacagaaggatctaaggaaaagaggggtgatatctgctgccaaaaagtct 505
           ||||| | |||||||||||| |||||||| ||||||||| |   ||||||||||||||||
Sbjct: 493 attgatgttgcacagaaggacctaaggaagagaggggtggttcttgctgccaaaaagtct 552

                      
Query: 506 tcaaggactgc 516
           ||| |||||||
Sbjct: 553 tcacggactgc 563
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 102/124 (82%)
 Strand = Plus / Minus

                                                                            
Query: 326      aggagatctagctccgaggtgcctgcttcggagcaaatgaatcttattagacaactacga 385
                |||||||  |||||||| || ||||| ||||||||||||||||| || | ||| ||  | 
Sbjct: 19057970 aggagattcagctccgaagttcctgcgtcggagcaaatgaatctcatcaaacagctgagg 19057911

                                                                            
Query: 386      gaaagaacttgtgctccgatcaaagatgtcaaggcttcgctagttacttgcaactgggat 445
                || || ||  | ||||| ||||||||||| ||||||||  |||||| |||||||||||||
Sbjct: 19057910 gagaggacgagcgctccaatcaaagatgtgaaggcttccttagttagttgcaactgggat 19057851

                    
Query: 446      attg 449
                ||||
Sbjct: 19057850 attg 19057847



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                            
Query: 454      tgcacagaaggatctaaggaaaagaggggtgatatctgctgccaaaaagtcttcaaggac 513
                |||||||||||| |||||||| ||||||||| |   ||||||||||||||||||| ||||
Sbjct: 19057749 tgcacagaaggacctaaggaagagaggggtggttcttgctgccaaaaagtcttcacggac 19057690

                   
Query: 514      tgc 516
                |||
Sbjct: 19057689 tgc 19057687
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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 102/124 (82%)
 Strand = Plus / Minus

                                                                         
Query: 326   aggagatctagctccgaggtgcctgcttcggagcaaatgaatcttattagacaactacga 385
             |||||||  |||||||| || ||||| ||||||||||||||||| || | ||| ||  | 
Sbjct: 82757 aggagattcagctccgaagttcctgcgtcggagcaaatgaatctcatcaaacagctgagg 82698

                                                                         
Query: 386   gaaagaacttgtgctccgatcaaagatgtcaaggcttcgctagttacttgcaactgggat 445
             || || ||  | ||||| ||||||||||| ||||||||  |||||| |||||||||||||
Sbjct: 82697 gagaggacgagcgctccaatcaaagatgtgaaggcttccttagttagttgcaactgggat 82638

                 
Query: 446   attg 449
             ||||
Sbjct: 82637 attg 82634



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 454   tgcacagaaggatctaaggaaaagaggggtgatatctgctgccaaaaagtcttcaaggac 513
             |||||||||||| |||||||| ||||||||| |   ||||||||||||||||||| ||||
Sbjct: 82536 tgcacagaaggacctaaggaagagaggggtggttcttgctgccaaaaagtcttcacggac 82477

                
Query: 514   tgc 516
             |||
Sbjct: 82476 tgc 82474
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 232    tcgtgctcaacgacaagctgctcga 256
              |||||||||||||||||||||||||
Sbjct: 850653 tcgtgctcaacgacaagctgctcga 850629
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>dbj|AK101153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027D03, full
           insert sequence
          Length = 2082

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 122 tggcgttcggcggcggcggtt 142
           |||||||||||||||||||||
Sbjct: 842 tggcgttcggcggcggcggtt 862
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>emb|AL683814.10| Mouse DNA sequence from clone RP23-165L23 on chromosome 2, complete
              sequence
          Length = 191052

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 101    ggctcccagtctcccaccctc 121
              |||||||||||||||||||||
Sbjct: 181241 ggctcccagtctcccaccctc 181221
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>gb|AC117247.4| Mus musculus BAC clone RP24-323L24 from chromosome 5, complete sequence
          Length = 162677

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      ctccatccagtaaagaaaaa 27
              ||||||||||||||||||||
Sbjct: 117591 ctccatccagtaaagaaaaa 117572
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>gb|AC160400.12| Mus musculus 6 BAC RP23-321M22 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 219634

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    gcgcgcaccctcctcccggctccc 107
             |||||||||||| |||||||||||
Sbjct: 35083 gcgcgcaccctcgtcccggctccc 35106
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>gb|AC118606.13| Mus musculus chromosome 5, clone RP24-69F9, complete sequence
          Length = 208384

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      ctccatccagtaaagaaaaa 27
              ||||||||||||||||||||
Sbjct: 205811 ctccatccagtaaagaaaaa 205830
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>gb|AC117200.3| Mus musculus BAC clone RP23-164N7 from 3, complete sequence
          Length = 220758

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     catccagtaaagaaaaagtt 30
              ||||||||||||||||||||
Sbjct: 111626 catccagtaaagaaaaagtt 111607
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 130     ggcggcggcggttgaacggc 149
               ||||||||||||||||||||
Sbjct: 2532998 ggcggcggcggttgaacggc 2532979
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>dbj|AB026639.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13
          Length = 63921

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   aaaatggcatgatccgtagg 328
             ||||||||||||||||||||
Sbjct: 59621 aaaatggcatgatccgtagg 59640
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>emb|CT571245.12| Mouse DNA sequence from clone RP23-2N7 on chromosome 12, complete
              sequence
          Length = 198268

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    atctgagaatggcttggggtcagg 200
              ||||||||||||||||| ||||||
Sbjct: 196338 atctgagaatggcttggtgtcagg 196315
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>emb|CR974423.21| Mouse DNA sequence from clone RP23-182F9 on chromosome 12, complete
              sequence
          Length = 238441

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 177    atctgagaatggcttggggtcagg 200
              ||||||||||||||||| ||||||
Sbjct: 238372 atctgagaatggcttggtgtcagg 238395
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>gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, complete sequence
          Length = 202915

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    ctgagaatggcttggggtca 198
              ||||||||||||||||||||
Sbjct: 103841 ctgagaatggcttggggtca 103860
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>gb|AC104324.21| Mus musculus strain C57BL/6J chromosome 6 clone rp23-177j21, complete
              sequence
          Length = 193277

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     gcgcgcaccctcctcccggctccc 107
              |||||||||||| |||||||||||
Sbjct: 145792 gcgcgcaccctcgtcccggctccc 145815
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>emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, complete sequence
          Length = 174143

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    atccagtaaagaaaaagtta 31
             ||||||||||||||||||||
Sbjct: 26361 atccagtaaagaaaaagtta 26342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,253,191
Number of Sequences: 3902068
Number of extensions: 4253191
Number of successful extensions: 69077
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68941
Number of HSP's gapped (non-prelim): 136
length of query: 524
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 501
effective length of database: 17,143,297,704
effective search space: 8588792149704
effective search space used: 8588792149704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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