ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190683.1| Oryza sativa (japonica cultivar-group), predic... 343 4e-91
2dbj|AK119765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 4e-91
3dbj|AK070663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 4e-91
4gb|AY108943.1| Zea mays PCO088651 mRNA sequence 303 3e-79
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
6dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
7ref|NM_128318.2| Arabidopsis thaliana unknown protein AT2G27590 ... 54 5e-04
8gb|BT011965.1| Arabidopsis thaliana At2g27590 mRNA sequence 54 5e-04
9gb|AY096667.1| Arabidopsis thaliana unknown protein (At2g27590) ... 54 5e-04
10gb|AY072120.1| Arabidopsis thaliana unknown protein (At2g27590) ... 54 5e-04
11gb|AC006232.4| Arabidopsis thaliana chromosome 2 clone F10A12 ma... 54 5e-04
12gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 ma... 54 5e-04
13emb|BX821519.1|CNS0A98B Arabidopsis thaliana Full-length cDNA Co... 54 5e-04
14gb|AY084582.1| Arabidopsis thaliana clone 112362 mRNA, complete ... 54 5e-04
15ref|XR_004585.1| PREDICTED: Mus musculus hypothetical gene suppo... 42 2.1
16ref|XR_001556.1| PREDICTED: Mus musculus hypothetical gene suppo... 42 2.1
17gb|AC079271.4| Homo sapiens chromosome 10 clone RP11-455I1, comp... 42 2.1
18dbj|AK081008.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 42 2.1
19gb|M29248.1|MUSMHABD Mus musculus MHC class II H2-IA-beta gene (... 42 2.1
20emb|AL691500.7| Mouse DNA sequence from clone RP23-182H15 on chr... 42 2.1
21gb|K00008.1|MUSMHABZ2 Mouse MHC class II H2-IA-beta gene (haplot... 42 2.1
22gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
23gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
24ref|XM_581481.2| PREDICTED: Bos taurus hypothetical LOC505226 (L... 40 8.1
25gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 8.1
26gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 8.1
27gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete seq... 40 8.1
28emb|AL442123.12| Human DNA sequence from clone RP11-175O19 on ch... 40 8.1
29emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.1
30emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 8.1
31emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.1
32gb|BC109687.1| Bos taurus cDNA clone MGC:134574 IMAGE:8058780, c... 40 8.1
33dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.1
35dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.1
36dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 8.1
37dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 8.1
38emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.1
39emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in... 40 8.1
40dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 8.1 
>ref|NM_190683.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1320

 Score =  343 bits (173), Expect = 4e-91
 Identities = 277/312 (88%)
 Strand = Plus / Plus

                                                                       
Query: 281 gccttccaagttccacctgtaccagctttccgtgcagtcgccaaaaggggacatcagcta 340
           |||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 336 gccttccaagttccacctgtaccaactctccgtccagtcgccaaaaggggacattagcta 395

                                                                       
Query: 341 cctgcagaagttctttctgatgtatgtaggcggacgcatccctctccacctgcaggagga 400
           ||||||||||||||| || ||||| || ||||| ||| ||||||| ||| | || |||||
Sbjct: 396 cctgcagaagttcttccttatgtacgtcggcgggcgcgtccctctgcacttccaagagga 455

                                                                       
Query: 401 tttctgtggcacggctcttctcagtactgagtggcttcgcactgatacaaggcgaacagc 460
           ||||||||||||||| || |||||| ||||||||||||| |||||| ||||||| |||||
Sbjct: 456 tttctgtggcacggccctcctcagtgctgagtggcttcgtactgatgcaaggcgtacagc 515

                                                                       
Query: 461 agtcggcttagactttgaccgtgagtcacttgagtggtgtcttgagaacaacctgagcaa 520
           ||| |||||||| || |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 516 agttggcttagatttggaccttgagtcacttgagtggtgtcttgaaaacaacctgagcaa 575

                                                                       
Query: 521 gattggagctgatgggtattcgagattgttgctttttgatggnaatgttctgcagccaaa 580
           ||||||||||||||||||||| ||| || | |||||  |||| |||||||| ||||||||
Sbjct: 576 gattggagctgatgggtattcaagaatgctacttttccatggaaatgttctacagccaaa 635

                       
Query: 581 tgaatctcgcct 592
           || | |||||||
Sbjct: 636 tgtagctcgcct 647



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 177 gaggactcggacggcgacgattccgacggagcagcagcggaggacgaacacga 229
           |||||||| ||||| |||||  |||||| ||||||||| ||||||||||||||
Sbjct: 235 gaggactccgacggtgacgacaccgacgaagcagcagccgaggacgaacacga 287



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 74  gaagacgaaggagtcgcaccggcaaggccgcggccgccgtg 114
           ||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 105 gaagaagacggagtcgcaccggcaaggccgaggccgccgtg 145
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>dbj|AK119765.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A01, full
           insert sequence
          Length = 2131

 Score =  343 bits (173), Expect = 4e-91
 Identities = 277/312 (88%)
 Strand = Plus / Plus

                                                                       
Query: 281 gccttccaagttccacctgtaccagctttccgtgcagtcgccaaaaggggacatcagcta 340
           |||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 269 gccttccaagttccacctgtaccaactctccgtccagtcgccaaaaggggacattagcta 328

                                                                       
Query: 341 cctgcagaagttctttctgatgtatgtaggcggacgcatccctctccacctgcaggagga 400
           ||||||||||||||| || ||||| || ||||| ||| ||||||| ||| | || |||||
Sbjct: 329 cctgcagaagttcttccttatgtacgtcggcgggcgcgtccctctgcacttccaagagga 388

                                                                       
Query: 401 tttctgtggcacggctcttctcagtactgagtggcttcgcactgatacaaggcgaacagc 460
           ||||||||||||||| || |||||| ||||||||||||| |||||| ||||||| |||||
Sbjct: 389 tttctgtggcacggccctcctcagtgctgagtggcttcgtactgatgcaaggcgtacagc 448

                                                                       
Query: 461 agtcggcttagactttgaccgtgagtcacttgagtggtgtcttgagaacaacctgagcaa 520
           ||| |||||||| || |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 449 agttggcttagatttggaccttgagtcacttgagtggtgtcttgaaaacaacctgagcaa 508

                                                                       
Query: 521 gattggagctgatgggtattcgagattgttgctttttgatggnaatgttctgcagccaaa 580
           ||||||||||||||||||||| ||| || | |||||  |||| |||||||| ||||||||
Sbjct: 509 gattggagctgatgggtattcaagaatgctacttttccatggaaatgttctacagccaaa 568

                       
Query: 581 tgaatctcgcct 592
           || | |||||||
Sbjct: 569 tgtagctcgcct 580



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 177 gaggactcggacggcgacgattccgacggagcagcagcggaggacgaacacga 229
           |||||||| ||||| |||||  |||||| ||||||||| ||||||||||||||
Sbjct: 168 gaggactccgacggtgacgacaccgacgaagcagcagccgaggacgaacacga 220



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 74  gaagacgaaggagtcgcaccggcaaggccgcggccgccgtg 114
           ||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 38  gaagaagacggagtcgcaccggcaaggccgaggccgccgtg 78
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>dbj|AK070663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F20, full
           insert sequence
          Length = 1533

 Score =  343 bits (173), Expect = 4e-91
 Identities = 277/312 (88%)
 Strand = Plus / Plus

                                                                       
Query: 281 gccttccaagttccacctgtaccagctttccgtgcagtcgccaaaaggggacatcagcta 340
           |||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||
Sbjct: 263 gccttccaagttccacctgtaccaactctccgtccagtcgccaaaaggggacattagcta 322

                                                                       
Query: 341 cctgcagaagttctttctgatgtatgtaggcggacgcatccctctccacctgcaggagga 400
           ||||||||||||||| || ||||| || ||||| ||| ||||||| ||| | || |||||
Sbjct: 323 cctgcagaagttcttccttatgtacgtcggcgggcgcgtccctctgcacttccaagagga 382

                                                                       
Query: 401 tttctgtggcacggctcttctcagtactgagtggcttcgcactgatacaaggcgaacagc 460
           ||||||||||||||| || |||||| ||||||||||||| |||||| ||||||| |||||
Sbjct: 383 tttctgtggcacggccctcctcagtgctgagtggcttcgtactgatgcaaggcgtacagc 442

                                                                       
Query: 461 agtcggcttagactttgaccgtgagtcacttgagtggtgtcttgagaacaacctgagcaa 520
           ||| |||||||| || |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 443 agttggcttagatttggaccttgagtcacttgagtggtgtcttgaaaacaacctgagcaa 502

                                                                       
Query: 521 gattggagctgatgggtattcgagattgttgctttttgatggnaatgttctgcagccaaa 580
           ||||||||||||||||||||| ||| || | |||||  |||| |||||||| ||||||||
Sbjct: 503 gattggagctgatgggtattcaagaatgctacttttccatggaaatgttctacagccaaa 562

                       
Query: 581 tgaatctcgcct 592
           || | |||||||
Sbjct: 563 tgtagctcgcct 574



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 177 gaggactcggacggcgacgattccgacggagcagcagcggaggacgaacacga 229
           |||||||| ||||| |||||  |||||| ||||||||| ||||||||||||||
Sbjct: 162 gaggactccgacggtgacgacaccgacgaagcagcagccgaggacgaacacga 214



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 74  gaagacgaaggagtcgcaccggcaaggccgcggccgccgtg 114
           ||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 32  gaagaagacggagtcgcaccggcaaggccgaggccgccgtg 72
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>gb|AY108943.1| Zea mays PCO088651 mRNA sequence
          Length = 1033

 Score =  303 bits (153), Expect = 3e-79
 Identities = 275/316 (87%)
 Strand = Plus / Plus

                                                                       
Query: 281 gccttccaagttccacctgtaccagctttccgtgcagtcgccaaaaggggacatcagcta 340
           |||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct: 343 gccttccaagtttcacctataccagctctccgtgcagtcgccgaagggggacatcagcta 402

                                                                       
Query: 341 cctgcagaagttctttctgatgtatgtaggcggacgcatccctctccacctgcaggagga 400
           | ||||||||||||| ||||||||||| ||||| |||  |||||||||||||||||||||
Sbjct: 403 cttgcagaagttcttcctgatgtatgtcggcgggcgcgcccctctccacctgcaggagga 462

                                                                       
Query: 401 tttctgtggcacggctcttctcagtactgagtggcttcgcactgatacaaggcgaacagc 460
           ||||||||||||||| || ||||| || |||||| | || |||||| ||||  | |||||
Sbjct: 463 tttctgtggcacggccctcctcagcaccgagtggatccgtactgatgcaagaaggacagc 522

                                                                       
Query: 461 agtcggcttagactttgaccgtgagtcacttgagtggtgtcttgagaacaacctgagcaa 520
           | | ||||||||||| || | |||||||||||||||||| ||||| |||||||| |||||
Sbjct: 523 aattggcttagacttggatcttgagtcacttgagtggtgccttgaaaacaacctaagcaa 582

                                                                       
Query: 521 gattggagctgatgggtattcgagattgttgctttttgatggnaatgttctgcagccaaa 580
           ||||||||||||||||||||| ||| ||||||||||  |||| |||||||| || |||| 
Sbjct: 583 gattggagctgatgggtattcaagaatgttgcttttccatggaaatgttctacaaccaat 642

                           
Query: 581 tgaatctcgccttgtc 596
            ||||| || ||||||
Sbjct: 643 ggaatcccgtcttgtc 658



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 57  atgggtaagagcggaaagaagacgaaggagtcgcaccggcaaggccgcggccg 109
           ||||| || |||||||||||  ||| ||| ||||||||||| |||||||||||
Sbjct: 110 atgggcaaaagcggaaagaaaccgagggaatcgcaccggcagggccgcggccg 162
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  190 bits (96), Expect = 4e-45
 Identities = 152/171 (88%)
 Strand = Plus / Plus

                                                                            
Query: 422      cagtactgagtggcttcgcactgatacaaggcgaacagcagtcggcttagactttgaccg 481
                |||| ||||||||||||| |||||| ||||||| |||||||| |||||||| || |||| 
Sbjct: 37117145 cagtgctgagtggcttcgtactgatgcaaggcgtacagcagttggcttagatttggacct 37117204

                                                                            
Query: 482      tgagtcacttgagtggtgtcttgagaacaacctgagcaagattggagctgatgggtattc 541
                |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 37117205 tgagtcacttgagtggtgtcttgaaaacaacctgagcaagattggagctgatgggtattc 37117264

                                                                   
Query: 542      gagattgttgctttttgatggnaatgttctgcagccaaatgaatctcgcct 592
                 ||| || | |||||  |||| |||||||| |||||||||| | |||||||
Sbjct: 37117265 aagaatgctacttttccatggaaatgttctacagccaaatgtagctcgcct 37117315



 Score =  113 bits (57), Expect = 7e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                            
Query: 316      agtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgtaggcggac 375
                ||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||| |
Sbjct: 37116794 agtcgccaaaaggggacattagctacctgcagaagttcttccttatgtacgtcggcgggc 37116853

                                                                 
Query: 376      gcatccctctccacctgcaggaggatttctgtggcacggctcttctcag 424
                || ||||||| ||| | || |||||||||||||||||||| || |||||
Sbjct: 37116854 gcgtccctctgcacttccaagaggatttctgtggcacggccctcctcag 37116902



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 177      gaggactcggacggcgacgattccgacggagcagcagcggaggacgaacacga 229
                |||||||| ||||| |||||  |||||| ||||||||| ||||||||||||||
Sbjct: 37116558 gaggactccgacggtgacgacaccgacgaagcagcagccgaggacgaacacga 37116610



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 74       gaagacgaaggagtcgcaccggcaaggccgcggccgccgtg 114
                ||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 37116428 gaagaagacggagtcgcaccggcaaggccgaggccgccgtg 37116468



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 281      gccttccaagttccacctgtaccagctttccgt 313
                |||||||||||||||||||||||| || |||||
Sbjct: 37116659 gccttccaagttccacctgtaccaactctccgt 37116691
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>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0683F02
          Length = 153388

 Score =  190 bits (96), Expect = 4e-45
 Identities = 152/171 (88%)
 Strand = Plus / Plus

                                                                          
Query: 422    cagtactgagtggcttcgcactgatacaaggcgaacagcagtcggcttagactttgaccg 481
              |||| ||||||||||||| |||||| ||||||| |||||||| |||||||| || |||| 
Sbjct: 118286 cagtgctgagtggcttcgtactgatgcaaggcgtacagcagttggcttagatttggacct 118345

                                                                          
Query: 482    tgagtcacttgagtggtgtcttgagaacaacctgagcaagattggagctgatgggtattc 541
              |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 118346 tgagtcacttgagtggtgtcttgaaaacaacctgagcaagattggagctgatgggtattc 118405

                                                                 
Query: 542    gagattgttgctttttgatggnaatgttctgcagccaaatgaatctcgcct 592
               ||| || | |||||  |||| |||||||| |||||||||| | |||||||
Sbjct: 118406 aagaatgctacttttccatggaaatgttctacagccaaatgtagctcgcct 118456



 Score =  113 bits (57), Expect = 7e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                          
Query: 316    agtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgtaggcggac 375
              ||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||| |
Sbjct: 117935 agtcgccaaaaggggacattagctacctgcagaagttcttccttatgtacgtcggcgggc 117994

                                                               
Query: 376    gcatccctctccacctgcaggaggatttctgtggcacggctcttctcag 424
              || ||||||| ||| | || |||||||||||||||||||| || |||||
Sbjct: 117995 gcgtccctctgcacttccaagaggatttctgtggcacggccctcctcag 118043



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 177    gaggactcggacggcgacgattccgacggagcagcagcggaggacgaacacga 229
              |||||||| ||||| |||||  |||||| ||||||||| ||||||||||||||
Sbjct: 117699 gaggactccgacggtgacgacaccgacgaagcagcagccgaggacgaacacga 117751



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                       
Query: 74     gaagacgaaggagtcgcaccggcaaggccgcggccgccgtg 114
              ||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 117569 gaagaagacggagtcgcaccggcaaggccgaggccgccgtg 117609



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 281    gccttccaagttccacctgtaccagctttccgt 313
              |||||||||||||||||||||||| || |||||
Sbjct: 117800 gccttccaagttccacctgtaccaactctccgt 117832
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>ref|NM_128318.2| Arabidopsis thaliana unknown protein AT2G27590 mRNA, complete cds
          Length = 1324

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 309 tccgtgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgt 367
           ||||| ||||| |||||||| ||||| || ||| |||||||||||||| | ||||||||
Sbjct: 276 tccgttcagtcaccaaaaggagacataagttacttgcagaagttctttttaatgtatgt 334
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>gb|BT011965.1| Arabidopsis thaliana At2g27590 mRNA sequence
          Length = 1116

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 309 tccgtgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgt 367
           ||||| ||||| |||||||| ||||| || ||| |||||||||||||| | ||||||||
Sbjct: 199 tccgttcagtcaccaaaaggagacataagttacttgcagaagttctttttaatgtatgt 257
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>gb|AY096667.1| Arabidopsis thaliana unknown protein (At2g27590) mRNA, complete cds
          Length = 1150

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 309 tccgtgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgt 367
           ||||| ||||| |||||||| ||||| || ||| |||||||||||||| | ||||||||
Sbjct: 202 tccgttcagtcaccaaaaggagacataagttacttgcagaagttctttttaatgtatgt 260
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>gb|AY072120.1| Arabidopsis thaliana unknown protein (At2g27590) mRNA, complete cds
          Length = 1299

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 309 tccgtgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgt 367
           ||||| ||||| |||||||| ||||| || ||| |||||||||||||| | ||||||||
Sbjct: 234 tccgttcagtcaccaaaaggagacataagttacttgcagaagttctttttaatgtatgt 292
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>gb|AC006232.4| Arabidopsis thaliana chromosome 2 clone F10A12 map B68, complete
             sequence
          Length = 90341

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 313   tgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgt 367
             ||||||| |||||||| ||||| || ||| |||||||||||||| | ||||||||
Sbjct: 84328 tgcagtcaccaaaaggagacataagttacttgcagaagttctttttaatgtatgt 84274
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>gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 map B68, complete sequence
          Length = 118196

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 313    tgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgt 367
              ||||||| |||||||| ||||| || ||| |||||||||||||| | ||||||||
Sbjct: 100345 tgcagtcaccaaaaggagacataagttacttgcagaagttctttttaatgtatgt 100399
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>emb|BX821519.1|CNS0A98B Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL48ZB12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1260

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 309 tccgtgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgt 367
           ||||| ||||| |||||||| ||||| || ||| |||||||||||||| | ||||||||
Sbjct: 244 tccgttcagtcaccaaaaggagacataagttacttgcagaagttctttttaatgtatgt 302
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>gb|AY084582.1| Arabidopsis thaliana clone 112362 mRNA, complete sequence
          Length = 1276

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 309 tccgtgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgt 367
           ||||| ||||| |||||||| ||||| || ||| |||||||||||||| | ||||||||
Sbjct: 276 tccgttcagtcaccaaaaggagacataagttacttgcagaagttctttttaatgtatgt 334
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>ref|XR_004585.1| PREDICTED: Mus musculus hypothetical gene supported by AK081008
            (LOC434775), misc RNA
          Length = 3511

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   agagcggaaagaagacgaaggagtc 88
            ||||| |||||||||||||||||||
Sbjct: 3364 agagctgaaagaagacgaaggagtc 3340
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>ref|XR_001556.1| PREDICTED: Mus musculus hypothetical gene supported by AK081008
            (LOC434775), misc RNA
          Length = 3511

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   agagcggaaagaagacgaaggagtc 88
            ||||| |||||||||||||||||||
Sbjct: 3364 agagctgaaagaagacgaaggagtc 3340
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>gb|AC079271.4| Homo sapiens chromosome 10 clone RP11-455I1, complete sequence
          Length = 200476

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 502    ttgagaacaacctgagcaaga 522
              |||||||||||||||||||||
Sbjct: 138511 ttgagaacaacctgagcaaga 138491
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>dbj|AK081008.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930020H05
            product:unclassifiable, full insert sequence
          Length = 3512

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 64   agagcggaaagaagacgaaggagtc 88
            ||||| |||||||||||||||||||
Sbjct: 3365 agagctgaaagaagacgaaggagtc 3341
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>gb|M29248.1|MUSMHABD Mus musculus MHC class II H2-IA-beta gene (haplotype d), partial cds
          Length = 2861

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 486  tcacttgagtggtgtcttgag 506
            |||||||||||||||||||||
Sbjct: 2719 tcacttgagtggtgtcttgag 2739
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>emb|AL691500.7| Mouse DNA sequence from clone RP23-182H15 on chromosome X, complete
              sequence
          Length = 196828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 64     agagcggaaagaagacgaaggagtc 88
              ||||| |||||||||||||||||||
Sbjct: 136797 agagctgaaagaagacgaaggagtc 136821
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>gb|K00008.1|MUSMHABZ2 Mouse MHC class II H2-IA-beta gene (haplotype d), exons 2-6 and
            partial cds
          Length = 4948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 486  tcacttgagtggtgtcttgag 506
            |||||||||||||||||||||
Sbjct: 4099 tcacttgagtggtgtcttgag 4119
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>gb|AC124141.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0065C11,
              complete sequence
          Length = 141578

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    gccgccgcgccgccaggagg 180
              ||||||||||||||||||||
Sbjct: 133978 gccgccgcgccgccaggagg 133959
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>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0059K16, complete sequence
          Length = 139615

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   gccgccgcgccgccaggagg 180
             ||||||||||||||||||||
Sbjct: 12267 gccgccgcgccgccaggagg 12248
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>ref|XM_581481.2| PREDICTED: Bos taurus hypothetical LOC505226 (LOC505226), partial
           mRNA
          Length = 684

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 gccgccgcgccgccaggagg 180
           ||||||||||||||||||||
Sbjct: 85  gccgccgcgccgccaggagg 66
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    cgccgcgccgccaggaggac 182
              ||||||||||||||||||||
Sbjct: 273488 cgccgcgccgccaggaggac 273469
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 577     caaatgaatctcgccttgtc 596
               ||||||||||||||||||||
Sbjct: 4109137 caaatgaatctcgccttgtc 4109156
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>gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete sequence
          Length = 119095

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                         
Query: 313   tgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgtaggcg 372
             ||||||| || ||||| ||||| || ||  |||| ||||||||||| |||||||| || |
Sbjct: 93017 tgcagtctcccaaaggagacattagttatttgcaaaagttctttctcatgtatgtgggtg 92958

                                                     
Query: 373   gacgcatccctctccacctgcaggaggatttctgtggcac 412
             || |  | || ||||| || || || ||||||||||||||
Sbjct: 92957 gaagggtgcccctccatcttcaagaagatttctgtggcac 92918
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>emb|AL442123.12| Human DNA sequence from clone RP11-175O19 on chromosome 10 Contains the
             3' end of the MLR2 gene for a novel protein (likely
             ortholog of mouse transcription factor MLR2), the gene for
             a novel protein novel protein (DKFZP564P1916)(FLJ13022),
             the 3' end of the SLIT1 gene for slit homolog 1
             (Drosophila) and a CpG island, complete sequence
          Length = 96660

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ctgcaggaggatttctgtgg 409
             ||||||||||||||||||||
Sbjct: 78375 ctgcaggaggatttctgtgg 78356
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    cggcaaggccgcggccgccg 112
             ||||||||||||||||||||
Sbjct: 86700 cggcaaggccgcggccgccg 86681
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     cggcaaggccgcggccgccg 112
              ||||||||||||||||||||
Sbjct: 281309 cggcaaggccgcggccgccg 281290
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 163     cgccgcgccgccaggaggac 182
               ||||||||||||||||||||
Sbjct: 1599289 cgccgcgccgccaggaggac 1599270
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>gb|BC109687.1| Bos taurus cDNA clone MGC:134574 IMAGE:8058780, complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 gccgccgcgccgccaggagg 180
           ||||||||||||||||||||
Sbjct: 103 gccgccgcgccgccaggagg 84
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 161      gccgccgcgccgccaggagg 180
                ||||||||||||||||||||
Sbjct: 14595973 gccgccgcgccgccaggagg 14595954
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 93      cggcaaggccgcggccgccgtggc 116
               |||||||||||| |||||||||||
Sbjct: 3819933 cggcaaggccgccgccgccgtggc 3819910
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    acgacggaggcgcggaagcaggcg 249
              |||||||||||||| |||||||||
Sbjct: 572570 acgacggaggcgcgcaagcaggcg 572547
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 577     caaatgaatctcgccttgtc 596
               ||||||||||||||||||||
Sbjct: 5254703 caaatgaatctcgccttgtc 5254684
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     cgagccgccgcgccgccagg 177
               ||||||||||||||||||||
Sbjct: 3787814 cgagccgccgcgccgccagg 3787795
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 249     gaccgccagggccagtgcca 268
               ||||||||||||||||||||
Sbjct: 1090369 gaccgccagggccagtgcca 1090350
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>emb|BX510915.23| Zebrafish DNA sequence from clone DKEY-24M12 in linkage group 21,
              complete sequence
          Length = 253718

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 566    tgttctgcagccaaatgaat 585
              ||||||||||||||||||||
Sbjct: 116076 tgttctgcagccaaatgaat 116095
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>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144,
             complete sequence
          Length = 135217

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                         
Query: 313   tgcagtcgccaaaaggggacatcagctacctgcagaagttctttctgatgtatgtaggcg 372
             ||||||| || ||||| ||||| || ||  |||| ||||||||||| ||||| || || |
Sbjct: 48269 tgcagtctcccaaaggagacataagttatttgcaaaagttctttctcatgtacgtcggtg 48210

                                                     
Query: 373   gacgcatccctctccacctgcaggaggatttctgtggcac 412
             || | || || ||||| || || || ||||||||||||||
Sbjct: 48209 gaaggatgcccctccatctccaagaagatttctgtggcac 48170


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,135,937
Number of Sequences: 3902068
Number of extensions: 4135937
Number of successful extensions: 118194
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 117022
Number of HSP's gapped (non-prelim): 1172
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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