ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 190 bits (96), Expect = 3e-45 Identities = 195/227 (85%), Gaps = 2/227 (0%) Strand = Plus / Plus Query: 66 atggaggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagc 125 ||||||||||||| ||||||||||| | || |||||||| |||||||||||||||| | Sbjct: 56 atggaggtccccaacgatgccgagctcc--caagcacaggccgacctgtggcgccacacc 113 Query: 126 ctctactacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggcc 185 || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 114 ctttactacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcg 173 Query: 186 atccaccgcctcggcggggtcacctcgctgccgaacttgatggccgcgctgtcgcttccg 245 |||||| |||||| || ||| |||||||||| || || || |||||||| | ||| Sbjct: 174 atccacaacctcggtggcgtctcctcgctgcccgacctggcagctgcgctgtccatcccg 233 Query: 246 gcgagcaagcagccattcctcggccgcctaatgcgtgtgctggtcac 292 || ||||||||||| ||||||||||| || ||||| | ||||||||| Sbjct: 234 gcaagcaagcagccgttcctcggccgtcttatgcgcgcgctggtcac 280 Score = 81.8 bits (41), Expect = 2e-12 Identities = 124/151 (82%), Gaps = 3/151 (1%) Strand = Plus / Plus Query: 351 ctcttcagcctcaacccactgtcgcgcatcctggtggacggcgtggtcggccacgacgag 410 |||||| |||||||||| ||||| ||||||||||| || ||||| |||| || ||| Sbjct: 324 ctcttccgcctcaaccccctgtcccgcatcctggttgagggcgtcgtcgcg---gaggag 380 Query: 411 caccacagccagacgtccttcgtgctcgccgcgacgtcgcccttctacacggaggccgcg 470 ||||||||||||||||||||||| ||||| | ||| || | ||||| ||| || ||| Sbjct: 381 caccacagccagacgtccttcgtactcgctgggacttcccggcactacatggaagctgcg 440 Query: 471 ctggggctggccgactggttcaggaaggacg 501 |||||| |||| |||||||||| |||||||| Sbjct: 441 ctggggatggctgactggttcaagaaggacg 471
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Plus Query: 69 gaggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctc 128 ||||| ||||| || || ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 118915 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 118974 Query: 129 tactacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatc 188 ||||||||||| |||| ||| |||||||||||||||||||| |||||||| || |||||| Sbjct: 118975 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatc 119034 Query: 189 caccgcctcggcgg 202 |||||||||||||| Sbjct: 119035 caccgcctcggcgg 119048 Score = 155 bits (78), Expect = 2e-34 Identities = 111/122 (90%) Strand = Plus / Plus Query: 81 gatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacg 140 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 63231 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 63290 Query: 141 tccatggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgcctcggc 200 |||||||| |||||||||||| || |||||||||||||||| | ||||| |||||||| Sbjct: 63291 tccatgggcctccgctgcgccgtcgagctcggcatcccgaccacgatccatggcctcggc 63350 Query: 201 gg 202 || Sbjct: 63351 gg 63352 Score = 145 bits (73), Expect = 2e-31 Identities = 135/155 (87%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 404 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcccttctacacgga 463 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct: 119232 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcga 119291 Query: 464 ggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtc 523 ||| ||||||||||||| ||| ||||||||||||||||| || |||| || | ||||| Sbjct: 119292 ggcggcgctggggctggacgagtggttcaggaaggacgt---ggcgccgccgctcccgtc 119348 Query: 524 gccgttcgaggacgtgcatggcgcgtcgctcttcg 558 ||||||||||||||||| ||||||||||| |||| Sbjct: 119349 cccgttcgaggacgtgcacggcgcgtcgctgttcg 119383 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 96 caggcacaggcggacctgtggcgccacagcctctactacctcacgtccatggggctccgc 155 ||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 131497 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 131438 Query: 156 tgcgccatcaagctcggcatcccgacggccatccaccgcctcggcgg 202 |||||| |||||||||||||||| || | |||||||||||||||||| Sbjct: 131437 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcgg 131391 Score = 56.0 bits (28), Expect = 1e-04 Identities = 143/180 (79%), Gaps = 6/180 (3%) Strand = Plus / Plus Query: 369 ctgtcgcgcatcctggtggacggcgtggtcggccacgacgagcaccacagccagacgtcc 428 ||||| ||||||||||| |||||||| |||| | ||||||||||| ||||||| || | Sbjct: 63501 ctgtcccgcatcctggttgacggcgtcgtcgcc---gacgagcaccatagccagaggtgc 63557 Query: 429 ttcgtgctcgccgcgacgtcgcccttctacacggaggccgcgctggggctggccgactgg 488 ||||| || | | | ||||||| | |||| ||| || ||| | | |||| |||| ||| Sbjct: 63558 ttcgtcctgggcaccacgtcgcgccactacgtggacgcggcgttcgcgctgtccgagtgg 63617 Query: 489 ttcaggaaggacgtcacggggccggcggtgccgtcgccgttcgaggacgtgcatggcgcg 548 |||| ||||||| | || | || ||||||||||||||||||||||| |||| |||||| Sbjct: 63618 ttcaagaaggacct---ggcgtcgccggtgccgtcgccgttcgaggacctgcacggcgcg 63674 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Minus Query: 461 ggaggccgcgctggggctggccgactggttcaggaaggac 500 |||||| ||||| ||||||| ||||||||||| ||||||| Sbjct: 131126 ggaggcggcgctcgggctggacgactggttcatgaaggac 131087
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Plus Query: 69 gaggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctc 128 ||||| ||||| || || ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 4664 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 4723 Query: 129 tactacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatc 188 ||||||||||| |||| ||| |||||||||||||||||||| |||||||| || |||||| Sbjct: 4724 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatc 4783 Query: 189 caccgcctcggcgg 202 |||||||||||||| Sbjct: 4784 caccgcctcggcgg 4797 Score = 145 bits (73), Expect = 2e-31 Identities = 135/155 (87%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 404 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcccttctacacgga 463 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct: 4981 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcga 5040 Query: 464 ggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtc 523 ||| ||||||||||||| ||| ||||||||||||||||| || |||| || | ||||| Sbjct: 5041 ggcggcgctggggctggacgagtggttcaggaaggacgt---ggcgccgccgctcccgtc 5097 Query: 524 gccgttcgaggacgtgcatggcgcgtcgctcttcg 558 ||||||||||||||||| ||||||||||| |||| Sbjct: 5098 cccgttcgaggacgtgcacggcgcgtcgctgttcg 5132 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Minus Query: 96 caggcacaggcggacctgtggcgccacagcctctactacctcacgtccatggggctccgc 155 ||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 17246 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 17187 Query: 156 tgcgccatcaagctcggcatcccgacggccatccaccgcctcggcgg 202 |||||| |||||||||||||||| || | |||||||||||||||||| Sbjct: 17186 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcgg 17140 Score = 79.8 bits (40), Expect = 9e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 87 gagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccatg 146 ||||||||||| |||||||| || || |||||||||||||||| |||| ||||||| || Sbjct: 59936 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 59995 Query: 147 gggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 | |||| || | ||||||||| |||||||| || |||||||||||| Sbjct: 59996 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgc 60043 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Minus Query: 461 ggaggccgcgctggggctggccgactggttcaggaaggac 500 |||||| ||||| ||||||| ||||||||||| ||||||| Sbjct: 16875 ggaggcggcgctcgggctggacgactggttcatgaaggac 16836 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 527 gttcgaggacgtgcatggcgcgtcgctcttcg 558 |||||| ||||||||||||||| ||| ||||| Sbjct: 60358 gttcgaagacgtgcatggcgcgacgcccttcg 60389
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 155 bits (78), Expect = 2e-34 Identities = 111/122 (90%) Strand = Plus / Minus Query: 81 gatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacg 140 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 11550557 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 11550498 Query: 141 tccatggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgcctcggc 200 |||||||| |||||||||||| || |||||||||||||||| | ||||| |||||||| Sbjct: 11550497 tccatgggcctccgctgcgccgtcgagctcggcatcccgaccacgatccatggcctcggc 11550438 Query: 201 gg 202 || Sbjct: 11550437 gg 11550436 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Minus Query: 69 gaggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctc 128 ||||| ||||| || || ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 11494873 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 11494814 Query: 129 tactacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatc 188 ||||||||||| |||| ||| |||||||||||||||||||| |||||||| || |||||| Sbjct: 11494813 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatc 11494754 Query: 189 caccgcctcggcgg 202 |||||||||||||| Sbjct: 11494753 caccgcctcggcgg 11494740 Score = 145 bits (73), Expect = 2e-31 Identities = 135/155 (87%), Gaps = 3/155 (1%) Strand = Plus / Minus Query: 404 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcccttctacacgga 463 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct: 11494556 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcga 11494497 Query: 464 ggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtc 523 ||| ||||||||||||| ||| ||||||||||||||||| || |||| || | ||||| Sbjct: 11494496 ggcggcgctggggctggacgagtggttcaggaaggacgt---ggcgccgccgctcccgtc 11494440 Query: 524 gccgttcgaggacgtgcatggcgcgtcgctcttcg 558 ||||||||||||||||| ||||||||||| |||| Sbjct: 11494439 cccgttcgaggacgtgcacggcgcgtcgctgttcg 11494405 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 70 aggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctct 129 |||| ||||| || || ||||||||||| |||||||| ||||| |||||||||||| ||| Sbjct: 7139018 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 7138959 Query: 130 actacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatcc 189 |||||||||| |||||| ||||||||||||| ||||||||||||||| || ||||||| Sbjct: 7138958 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccccaccgccatcc 7138899 Query: 190 accgcctcggcgg 202 ||||||||||||| Sbjct: 7138898 accgcctcggcgg 7138886 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 96 caggcacaggcggacctgtggcgccacagcctctactacctcacgtccatggggctccgc 155 ||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 11482291 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11482350 Query: 156 tgcgccatcaagctcggcatcccgacggccatccaccgcctcggcgg 202 |||||| |||||||||||||||| || | |||||||||||||||||| Sbjct: 11482351 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcgg 11482397 Score = 121 bits (61), Expect = 3e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 86 cgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccat 145 |||||||||||| || ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct: 11331656 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 11331597 Query: 146 ggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 || | ||| |||||| |||||||||||||||| || |||||||||||| Sbjct: 11331596 ggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgc 11331548 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 86 cgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccat 145 |||||||||||| || ||||| ||| ||| ||||||||||||||||| | |||||||||| Sbjct: 11355304 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 11355245 Query: 146 ggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 || | | | |||||| |||||||||||||||| || |||||||||||| Sbjct: 11355244 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgc 11355196 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 102 caggcggacctgtggcgccacagcctctactacctcacgtccatggggctccgctgcgcc 161 ||||| || ||||||||||||| ||||| ||||||||| |||||| ||||| |||||| Sbjct: 11303032 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11302973 Query: 162 atcaagctcggcatcccgacggccatccaccgcctcggcggggtcacctcgctgcc 217 || | ||||||||||| || ||||||||||||| |||||| | | |||||||||| Sbjct: 11302972 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcc 11302917 Score = 79.8 bits (40), Expect = 9e-12 Identities = 91/108 (84%) Strand = Plus / Minus Query: 87 gagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccatg 146 ||||||||||| |||||||| || || |||||||||||||||| |||| ||||||| || Sbjct: 11439601 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 11439542 Query: 147 gggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 | |||| || | ||||||||| |||||||| || |||||||||||| Sbjct: 11439541 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgc 11439494 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 462 gaggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccg 521 ||||| ||| ||||||| || || ||||||||||||||||| ||| | | ||| |||| Sbjct: 11331283 gaggcggcgatggggctcgcggagtggttcaggaaggacgtgccggcggccgcgccgccg 11331224 Query: 522 tcgccgttcgaggacgtgcatggcgcg 548 |||||||||||||| ||||| |||||| Sbjct: 11331223 tcgccgttcgaggaggtgcacggcgcg 11331197 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 514 cggtgccgtcgccgttcgaggacgtgcatggcgcgtcgctcttcg 558 |||||||||||||||||||||||| ||| |||||| |||| |||| Sbjct: 7138571 cggtgccgtcgccgttcgaggacgcgcacggcgcgccgctgttcg 7138527 Score = 56.0 bits (28), Expect = 1e-04 Identities = 143/180 (79%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 369 ctgtcgcgcatcctggtggacggcgtggtcggccacgacgagcaccacagccagacgtcc 428 ||||| ||||||||||| |||||||| |||| | ||||||||||| ||||||| || | Sbjct: 11550287 ctgtcccgcatcctggttgacggcgtcgtcgcc---gacgagcaccatagccagaggtgc 11550231 Query: 429 ttcgtgctcgccgcgacgtcgcccttctacacggaggccgcgctggggctggccgactgg 488 ||||| || | | | ||||||| | |||| ||| || ||| | | |||| |||| ||| Sbjct: 11550230 ttcgtcctgggcaccacgtcgcgccactacgtggacgcggcgttcgcgctgtccgagtgg 11550171 Query: 489 ttcaggaaggacgtcacggggccggcggtgccgtcgccgttcgaggacgtgcatggcgcg 548 |||| ||||||| | || | || ||||||||||||||||||||||| |||| |||||| Sbjct: 11550170 ttcaagaaggacct---ggcgtcgccggtgccgtcgccgttcgaggacctgcacggcgcg 11550114 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 461 ggaggccgcgctggggctggccgactggttcaggaaggac 500 |||||| ||||| ||||||| ||||||||||| ||||||| Sbjct: 11482662 ggaggcggcgctcgggctggacgactggttcatgaaggac 11482701 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 518 gccgtcgccgttcgaggacgtgcatggcgc 547 |||||||||||||||||| ||||| ||||| Sbjct: 11354866 gccgtcgccgttcgaggaggtgcacggcgc 11354837 Score = 44.1 bits (22), Expect = 0.48 Identities = 55/66 (83%) Strand = Plus / Minus Query: 473 ggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtcgccgttcga 532 |||||| |||| |||||||||| ||||| || ||| ||| || ||||||||||||||| Sbjct: 11302673 ggggctcgccggctggttcagggaggacttcccggctccgtcgccgccgtcgccgttcga 11302614 Query: 533 ggacgt 538 | |||| Sbjct: 11302613 gcacgt 11302608 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 527 gttcgaggacgtgcatggcgcgtcgctcttcg 558 |||||| ||||||||||||||| ||| ||||| Sbjct: 11439179 gttcgaagacgtgcatggcgcgacgcccttcg 11439148 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 419 ccagacgtccttcgtgctcgccgcgacgtcgc 450 ||||||| ||||||| ||| |||||||||||| Sbjct: 7138672 ccagacgcccttcgtcctcaccgcgacgtcgc 7138641
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Plus Query: 69 gaggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctc 128 ||||| ||||| || || ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 75 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 134 Query: 129 tactacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatc 188 ||||||||||| |||| ||| |||||||||||||||||||| |||||||| || |||||| Sbjct: 135 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatc 194 Query: 189 caccgcctcggcgg 202 |||||||||||||| Sbjct: 195 caccgcctcggcgg 208 Score = 145 bits (73), Expect = 2e-31 Identities = 135/155 (87%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 404 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcccttctacacgga 463 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct: 392 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcga 451 Query: 464 ggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtc 523 ||| ||||||||||||| ||| ||||||||||||||||| || |||| || | ||||| Sbjct: 452 ggcggcgctggggctggacgagtggttcaggaaggacgt---ggcgccgccgctcccgtc 508 Query: 524 gccgttcgaggacgtgcatggcgcgtcgctcttcg 558 ||||||||||||||||| ||||||||||| |||| Sbjct: 509 cccgttcgaggacgtgcacggcgcgtcgctgttcg 543
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Plus Query: 69 gaggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctc 128 ||||| ||||| || || ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 80 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 139 Query: 129 tactacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatc 188 ||||||||||| |||| ||| |||||||||||||||||||| |||||||| || |||||| Sbjct: 140 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatc 199 Query: 189 caccgcctcggcgg 202 |||||||||||||| Sbjct: 200 caccgcctcggcgg 213 Score = 145 bits (73), Expect = 2e-31 Identities = 135/155 (87%), Gaps = 3/155 (1%) Strand = Plus / Plus Query: 404 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcccttctacacgga 463 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct: 397 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcga 456 Query: 464 ggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtc 523 ||| ||||||||||||| ||| ||||||||||||||||| || |||| || | ||||| Sbjct: 457 ggcggcgctggggctggacgagtggttcaggaaggacgt---ggcgccgccgctcccgtc 513 Query: 524 gccgttcgaggacgtgcatggcgcgtcgctcttcg 558 ||||||||||||||||| ||||||||||| |||| Sbjct: 514 cccgttcgaggacgtgcacggcgcgtcgctgttcg 548
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 155 bits (78), Expect = 2e-34 Identities = 111/122 (90%) Strand = Plus / Minus Query: 81 gatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacg 140 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 11629746 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 11629687 Query: 141 tccatggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgcctcggc 200 |||||||| |||||||||||| || |||||||||||||||| | ||||| |||||||| Sbjct: 11629686 tccatgggcctccgctgcgccgtcgagctcggcatcccgaccacgatccatggcctcggc 11629627 Query: 201 gg 202 || Sbjct: 11629626 gg 11629625 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Minus Query: 69 gaggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctc 128 ||||| ||||| || || ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 11574062 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 11574003 Query: 129 tactacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatc 188 ||||||||||| |||| ||| |||||||||||||||||||| |||||||| || |||||| Sbjct: 11574002 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatc 11573943 Query: 189 caccgcctcggcgg 202 |||||||||||||| Sbjct: 11573942 caccgcctcggcgg 11573929 Score = 145 bits (73), Expect = 2e-31 Identities = 135/155 (87%), Gaps = 3/155 (1%) Strand = Plus / Minus Query: 404 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcccttctacacgga 463 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct: 11573745 cgacgagcaccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcga 11573686 Query: 464 ggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtc 523 ||| ||||||||||||| ||| ||||||||||||||||| || |||| || | ||||| Sbjct: 11573685 ggcggcgctggggctggacgagtggttcaggaaggacgt---ggcgccgccgctcccgtc 11573629 Query: 524 gccgttcgaggacgtgcatggcgcgtcgctcttcg 558 ||||||||||||||||| ||||||||||| |||| Sbjct: 11573628 cccgttcgaggacgtgcacggcgcgtcgctgttcg 11573594 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 70 aggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctct 129 |||| ||||| || || ||||||||||| |||||||| ||||| |||||||||||| ||| Sbjct: 7204989 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 7204930 Query: 130 actacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatcc 189 |||||||||| |||||| ||||||||||||| ||||||||||||||| || ||||||| Sbjct: 7204929 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccccaccgccatcc 7204870 Query: 190 accgcctcggcgg 202 ||||||||||||| Sbjct: 7204869 accgcctcggcgg 7204857 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 96 caggcacaggcggacctgtggcgccacagcctctactacctcacgtccatggggctccgc 155 ||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 11561480 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11561539 Query: 156 tgcgccatcaagctcggcatcccgacggccatccaccgcctcggcgg 202 |||||| |||||||||||||||| || | |||||||||||||||||| Sbjct: 11561540 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcgg 11561586 Score = 121 bits (61), Expect = 3e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 86 cgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccat 145 |||||||||||| || ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct: 11410845 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 11410786 Query: 146 ggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 || | ||| |||||| |||||||||||||||| || |||||||||||| Sbjct: 11410785 ggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgc 11410737 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 86 cgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccat 145 |||||||||||| || ||||| ||| ||| ||||||||||||||||| | |||||||||| Sbjct: 11434493 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 11434434 Query: 146 ggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 || | | | |||||| |||||||||||||||| || |||||||||||| Sbjct: 11434433 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgc 11434385 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 102 caggcggacctgtggcgccacagcctctactacctcacgtccatggggctccgctgcgcc 161 ||||| || ||||||||||||| ||||| ||||||||| |||||| ||||| |||||| Sbjct: 11382221 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11382162 Query: 162 atcaagctcggcatcccgacggccatccaccgcctcggcggggtcacctcgctgcc 217 || | ||||||||||| || ||||||||||||| |||||| | | |||||||||| Sbjct: 11382161 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcc 11382106 Score = 79.8 bits (40), Expect = 9e-12 Identities = 91/108 (84%) Strand = Plus / Minus Query: 87 gagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccatg 146 ||||||||||| |||||||| || || |||||||||||||||| |||| ||||||| || Sbjct: 11518790 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 11518731 Query: 147 gggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 | |||| || | ||||||||| |||||||| || |||||||||||| Sbjct: 11518730 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgc 11518683 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 462 gaggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccg 521 ||||| ||| ||||||| || || ||||||||||||||||| ||| | | ||| |||| Sbjct: 11410472 gaggcggcgatggggctcgcggagtggttcaggaaggacgtgccggcggccgcgccgccg 11410413 Query: 522 tcgccgttcgaggacgtgcatggcgcg 548 |||||||||||||| ||||| |||||| Sbjct: 11410412 tcgccgttcgaggaggtgcacggcgcg 11410386 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 514 cggtgccgtcgccgttcgaggacgtgcatggcgcgtcgctcttcg 558 |||||||||||||||||||||||| ||| |||||| |||| |||| Sbjct: 7204542 cggtgccgtcgccgttcgaggacgcgcacggcgcgccgctgttcg 7204498 Score = 56.0 bits (28), Expect = 1e-04 Identities = 143/180 (79%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 369 ctgtcgcgcatcctggtggacggcgtggtcggccacgacgagcaccacagccagacgtcc 428 ||||| ||||||||||| |||||||| |||| | ||||||||||| ||||||| || | Sbjct: 11629476 ctgtcccgcatcctggttgacggcgtcgtcgcc---gacgagcaccatagccagaggtgc 11629420 Query: 429 ttcgtgctcgccgcgacgtcgcccttctacacggaggccgcgctggggctggccgactgg 488 ||||| || | | | ||||||| | |||| ||| || ||| | | |||| |||| ||| Sbjct: 11629419 ttcgtcctgggcaccacgtcgcgccactacgtggacgcggcgttcgcgctgtccgagtgg 11629360 Query: 489 ttcaggaaggacgtcacggggccggcggtgccgtcgccgttcgaggacgtgcatggcgcg 548 |||| ||||||| | || | || ||||||||||||||||||||||| |||| |||||| Sbjct: 11629359 ttcaagaaggacct---ggcgtcgccggtgccgtcgccgttcgaggacctgcacggcgcg 11629303 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 461 ggaggccgcgctggggctggccgactggttcaggaaggac 500 |||||| ||||| ||||||| ||||||||||| ||||||| Sbjct: 11561851 ggaggcggcgctcgggctggacgactggttcatgaaggac 11561890 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 518 gccgtcgccgttcgaggacgtgcatggcgc 547 |||||||||||||||||| ||||| ||||| Sbjct: 11434055 gccgtcgccgttcgaggaggtgcacggcgc 11434026 Score = 44.1 bits (22), Expect = 0.48 Identities = 55/66 (83%) Strand = Plus / Minus Query: 473 ggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtcgccgttcga 532 |||||| |||| |||||||||| ||||| || ||| ||| || ||||||||||||||| Sbjct: 11381862 ggggctcgccggctggttcagggaggacttcccggctccgtcgccgccgtcgccgttcga 11381803 Query: 533 ggacgt 538 | |||| Sbjct: 11381802 gcacgt 11381797 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 527 gttcgaggacgtgcatggcgcgtcgctcttcg 558 |||||| ||||||||||||||| ||| ||||| Sbjct: 11518368 gttcgaagacgtgcatggcgcgacgcccttcg 11518337 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 419 ccagacgtccttcgtgctcgccgcgacgtcgc 450 ||||||| ||||||| ||| |||||||||||| Sbjct: 7204643 ccagacgcccttcgtcctcaccgcgacgtcgc 7204612
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Plus Query: 70 aggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctct 129 |||| ||||| || || ||||||||||| |||||||| ||||| |||||||||||| ||| Sbjct: 43537 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 43596 Query: 130 actacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatcc 189 |||||||||| |||||| ||||||||||||| ||||||||||||||| || ||||||| Sbjct: 43597 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccccaccgccatcc 43656 Query: 190 accgcctcggcgg 202 ||||||||||||| Sbjct: 43657 accgcctcggcgg 43669 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 514 cggtgccgtcgccgttcgaggacgtgcatggcgcgtcgctcttcg 558 |||||||||||||||||||||||| ||| |||||| |||| |||| Sbjct: 43984 cggtgccgtcgccgttcgaggacgcgcacggcgcgccgctgttcg 44028 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 419 ccagacgtccttcgtgctcgccgcgacgtcgc 450 ||||||| ||||||| ||| |||||||||||| Sbjct: 43883 ccagacgcccttcgtcctcaccgcgacgtcgc 43914
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 70 aggtccccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctct 129 |||| ||||| || || ||||||||||| |||||||| ||||| |||||||||||| ||| Sbjct: 52238 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 52179 Query: 130 actacctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatcc 189 |||||||||| |||||| ||||||||||||| ||||||||||||||| || ||||||| Sbjct: 52178 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccccaccgccatcc 52119 Query: 190 accgcctcggcgg 202 ||||||||||||| Sbjct: 52118 accgcctcggcgg 52106 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 514 cggtgccgtcgccgttcgaggacgtgcatggcgcgtcgctcttcg 558 |||||||||||||||||||||||| ||| |||||| |||| |||| Sbjct: 51791 cggtgccgtcgccgttcgaggacgcgcacggcgcgccgctgttcg 51747 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 419 ccagacgtccttcgtgctcgccgcgacgtcgc 450 ||||||| ||||||| ||| |||||||||||| Sbjct: 51892 ccagacgcccttcgtcctcaccgcgacgtcgc 51861
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full insert sequence Length = 1300 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 96 caggcacaggcggacctgtggcgccacagcctctactacctcacgtccatggggctccgc 155 ||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 118 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 177 Query: 156 tgcgccatcaagctcggcatcccgacggccatccaccgcctcggcgg 202 |||||| |||||||||||||||| || | |||||||||||||||||| Sbjct: 178 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcgg 224 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 461 ggaggccgcgctggggctggccgactggttcaggaaggac 500 |||||| ||||| ||||||| ||||||||||| ||||||| Sbjct: 489 ggaggcggcgctcgggctggacgactggttcatgaaggac 528
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 123 bits (62), Expect = 7e-25 Identities = 188/230 (81%) Strand = Plus / Plus Query: 75 cccacggatgccgagctgctgcaggcacaggcggacctgtggcgccacagcctctactac 134 |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 63 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 122 Query: 135 ctcacgtccatggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 || || ||||||| |||| ||||| | ||||| ||||||||| ||||||||| | Sbjct: 123 ctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaac 182 Query: 195 ctcggcggggtcacctcgctgccgaacttgatggccgcgctgtcgcttccggcgagcaag 254 || |||||| || |||||||| || | ||||||||||||| || || ||| |||| Sbjct: 183 ctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaag 242 Query: 255 cagccattcctcggccgcctaatgcgtgtgctggtcacgtcgggtgtctt 304 | || |||||||| ||| | ||||| |||||||||||||||| ||||| Sbjct: 243 ctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtctt 292
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 121 bits (61), Expect = 3e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 86 cgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccat 145 |||||||||||| || ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct: 118014 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 117955 Query: 146 ggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 || | ||| |||||| |||||||||||||||| || |||||||||||| Sbjct: 117954 ggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgc 117906 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 86 cgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccat 145 |||||||||||| || ||||| ||| ||| ||||||||||||||||| | |||||||||| Sbjct: 141662 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 141603 Query: 146 ggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 || | | | |||||| |||||||||||||||| || |||||||||||| Sbjct: 141602 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgc 141554 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 102 caggcggacctgtggcgccacagcctctactacctcacgtccatggggctccgctgcgcc 161 ||||| || ||||||||||||| ||||| ||||||||| |||||| ||||| |||||| Sbjct: 89390 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 89331 Query: 162 atcaagctcggcatcccgacggccatccaccgcctcggcggggtcacctcgctgcc 217 || | ||||||||||| || ||||||||||||| |||||| | | |||||||||| Sbjct: 89330 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcc 89275 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 462 gaggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccg 521 ||||| ||| ||||||| || || ||||||||||||||||| ||| | | ||| |||| Sbjct: 117641 gaggcggcgatggggctcgcggagtggttcaggaaggacgtgccggcggccgcgccgccg 117582 Query: 522 tcgccgttcgaggacgtgcatggcgcg 548 |||||||||||||| ||||| |||||| Sbjct: 117581 tcgccgttcgaggaggtgcacggcgcg 117555 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 518 gccgtcgccgttcgaggacgtgcatggcgc 547 |||||||||||||||||| ||||| ||||| Sbjct: 141224 gccgtcgccgttcgaggaggtgcacggcgc 141195 Score = 44.1 bits (22), Expect = 0.48 Identities = 55/66 (83%) Strand = Plus / Minus Query: 473 ggggctggccgactggttcaggaaggacgtcacggggccggcggtgccgtcgccgttcga 532 |||||| |||| |||||||||| ||||| || ||| ||| || ||||||||||||||| Sbjct: 89031 ggggctcgccggctggttcagggaggacttcccggctccgtcgccgccgtcgccgttcga 88972 Query: 533 ggacgt 538 | |||| Sbjct: 88971 gcacgt 88966
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 121 bits (61), Expect = 3e-24 Identities = 97/109 (88%) Strand = Plus / Plus Query: 86 cgagctgctgcaggcacaggcggacctgtggcgccacagcctctactacctcacgtccat 145 |||||||||||| || ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct: 91 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 150 Query: 146 ggggctccgctgcgccatcaagctcggcatcccgacggccatccaccgc 194 || | ||| |||||| |||||||||||||||| || |||||||||||| Sbjct: 151 ggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgc 199 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 462 gaggccgcgctggggctggccgactggttcaggaaggacgtcacggggccggcggtgccg 521 ||||| ||| ||||||| || || ||||||||||||||||| ||| | | ||| |||| Sbjct: 464 gaggcggcgatggggctcgcggagtggttcaggaaggacgtgccggcggccgcgccgccg 523 Query: 522 tcgccgttcgaggacgtgcatggcgcg 548 |||||||||||||| ||||| |||||| Sbjct: 524 tcgccgttcgaggaggtgcacggcgcg 550
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 223 tgatggccgcgctgtcgcttccggcgagca 252 ||||||||||||||||||| | |||||||| Sbjct: 2843512 tgatggccgcgctgtcgctgcgggcgagca 2843541
>ref|NM_191262.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1137 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 150 ctccgctgcgccatcaagctcggcatccc 178 |||||||||||| || ||||||||||||| Sbjct: 100 ctccgctgcgccgtcgagctcggcatccc 128
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 166 agctcggcatcccgacggccatccaccgcctcggcgg 202 ||||||||||||| | ||||||||||||| |||||| Sbjct: 9845386 agctcggcatccccgccgccatccaccgccgcggcgg 9845350
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 150 ctccgctgcgccatcaagctcggcatccc 178 |||||||||||| || ||||||||||||| Sbjct: 31604095 ctccgctgcgccgtcgagctcggcatccc 31604123
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 150 ctccgctgcgccatcaagctcggcatccc 178 |||||||||||| || ||||||||||||| Sbjct: 17827 ctccgctgcgccgtcgagctcggcatccc 17855
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 150 ctccgctgcgccatcaagctcggcatccc 178 |||||||||||| || ||||||||||||| Sbjct: 117118 ctccgctgcgccgtcgagctcggcatccc 117146
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 166 agctcggcatcccgacggccatccaccgcctcggcgg 202 ||||||||||||| | ||||||||||||| |||||| Sbjct: 135628 agctcggcatccccgccgccatccaccgccgcggcgg 135592
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 166 agctcggcatcccgacggccatccaccgcctcggcgg 202 ||||||||||||| | ||||||||||||| |||||| Sbjct: 42021 agctcggcatccccgccgccatccaccgccgcggcgg 41985
>gb|AY632755.1| Mycobacterium avium hypothetical invasion protein (MA1477) gene, complete cds Length = 1413 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ggatgccgagctgctgcagg 99 |||||||||||||||||||| Sbjct: 937 ggatgccgagctgctgcagg 918
>gb|BC081939.1| Rattus norvegicus TATA box binding protein, mRNA (cDNA clone MGC:93994 IMAGE:7115389), complete cds Length = 1923 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 ccaccgcctcggcggggtca 207 |||||||||||||||||||| Sbjct: 8 ccaccgcctcggcggggtca 27
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 cggcggtgccgtcgccgttc 530 |||||||||||||||||||| Sbjct: 3086986 cggcggtgccgtcgccgttc 3086967
>ref|XM_964134.1| PREDICTED: Tribolium castaneum similar to CG7638-PA (LOC657687), mRNA Length = 1716 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccccacggatgccgagctgc 93 |||||||||||||||||||| Sbjct: 341 ccccacggatgccgagctgc 360
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccgaggcgggggagctcttc 356 |||||||||||||||||||| Sbjct: 2221498 ccgaggcgggggagctcttc 2221517
>gb|AC112223.2| Homo sapiens chromosome 3 clone RP11-237P23, complete sequence Length = 166745 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 agagtgcatagtagagagga 33 |||||||||||||||||||| Sbjct: 46049 agagtgcatagtagagagga 46068
>gb|AC008661.6| Homo sapiens chromosome 5 clone CTB-28J9, complete sequence Length = 188548 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 tcttcagcctcaacccactg 371 |||||||||||||||||||| Sbjct: 129151 tcttcagcctcaacccactg 129132
>ref|NM_001004198.1| Rattus norvegicus TATA box binding protein (Tbp), mRNA Length = 1923 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 ccaccgcctcggcggggtca 207 |||||||||||||||||||| Sbjct: 8 ccaccgcctcggcggggtca 27
>gb|AC152827.4| Mus musculus BAC clone RP23-60K23 from chromosome 12, complete sequence Length = 195066 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 agagaggaggagagcaatgg 45 |||||||||||||||||||| Sbjct: 135903 agagaggaggagagcaatgg 135922
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 catccaccgcctcggcggggtcac 208 |||||||||||||||| ||||||| Sbjct: 1644971 catccaccgcctcggccgggtcac 1644948
>gb|AC093557.4| Homo sapiens chromosome 3 clone RP11-56P22, complete sequence Length = 149941 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 agagtgcatagtagagagga 33 |||||||||||||||||||| Sbjct: 2509 agagtgcatagtagagagga 2490
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 cggaggccgcgctggggctg 479 |||||||||||||||||||| Sbjct: 996688 cggaggccgcgctggggctg 996707
>emb|AJ439337.1|MAV439337 Mycobacterium avium subsp. paratuberculosis invA gene for putative invasion protein Length = 822 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ggatgccgagctgctgcagg 99 |||||||||||||||||||| Sbjct: 346 ggatgccgagctgctgcagg 327
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 tcgcttccggcgagcaagcagcca 260 |||| ||||||||||||||||||| Sbjct: 229038 tcgcctccggcgagcaagcagcca 229061
>emb|AL596265.12| Mouse DNA sequence from clone RP23-134O19 on chromosome 12, complete sequence Length = 205332 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 agagaggaggagagcaatgg 45 |||||||||||||||||||| Sbjct: 170631 agagaggaggagagcaatgg 170612
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 gccgcgctggggctggccga 484 |||||||||||||||||||| Sbjct: 2504373 gccgcgctggggctggccga 2504392
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ggatgccgagctgctgcagg 99 |||||||||||||||||||| Sbjct: 1264878 ggatgccgagctgctgcagg 1264859
>gb|AF002133.1|AF002133 Mycobacterium avium strain GIR10 transcriptional regulator (mav81) gene, partial cds, aconitase (acn), invasin 1 (inv1), invasin 2 (inv2), transcriptional regulator (moxR), ketoacyl-reductase (fabG), enoyl-reductase (inhA) and ferrochelatase (mav272) genes, complete cds Length = 15437 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ggatgccgagctgctgcagg 99 |||||||||||||||||||| Sbjct: 5018 ggatgccgagctgctgcagg 4999 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,307,587 Number of Sequences: 3902068 Number of extensions: 3307587 Number of successful extensions: 73248 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71737 Number of HSP's gapped (non-prelim): 1487 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
