ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29c10 |
|---|---|
| Clone Library Name | barley_pub |
>TSJT1_TOBAC (P24805) Stem-specific protein TSJT1| Length = 149 Score = 85.9 bits (211), Expect = 7e-17 Identities = 43/113 (38%), Positives = 65/113 (57%) Frame = +3 Query: 153 GSRTPSPKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLLLPRSFAAKDEIFCL 332 G + KTR E+ + F + L + +A+SH E+ L PRS D++FC+ Sbjct: 22 GIQKKEAKTR-EEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCI 80 Query: 333 FEGVLDNLGRLSQQYGLSKGSNEVLLVIEAYKTLRDRAPYPASFMLSQLAGSY 491 F G LDN L + YGLS+ + E ++++EAYK LRDRAPYP ++ +L G + Sbjct: 81 FSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKF 133
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 37.4 bits (85), Expect = 0.031 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451 RGSPG+ G+A PA P RG+PG RGL A+G+ + Sbjct: 387 RGSPGEAGSAGPAGPP---GLRGSPGSRGLPGADGRAGV 422
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 36.6 bits (83), Expect = 0.052 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451 RGSPG+ G+A PA P RG+PG RGL A+G+ + Sbjct: 387 RGSPGEPGSAGPAGPP---GLRGSPGSRGLPGADGRAGV 422
>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)| Length = 1758 Score = 34.7 bits (78), Expect = 0.20 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG+ G A PA R Q G PG GL+ +G LP Sbjct: 1018 GLPGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLP 1056
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 33.9 bits (76), Expect = 0.34 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +2 Query: 338 GSPGQLGAAEP-AVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454 G+PG G+ P R L G + RGAPG RGLQ +G LP Sbjct: 704 GNPGDPGSRGPEGSRGLPGMEGPRGAPGPRGLQGEQGAPGLP 745
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 33.1 bits (74), Expect = 0.58 Identities = 16/39 (41%), Positives = 17/39 (43%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG G PA P RG PG+RG Q G P Sbjct: 773 GPPGDKGETGPAGAPGPAGSRGGPGERGEQGLPGPAGFP 811
>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor| Length = 675 Score = 33.1 bits (74), Expect = 0.58 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 GSPG++G A P+ P G PGDRGL G Sbjct: 348 GSPGEMGEAGPSGEPGIPGDVGIPGDRGLPGPRG 381
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 33.1 bits (74), Expect = 0.58 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +2 Query: 332 VRGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 + G PG+ G A RP + +RG G+RG Q +G LP Sbjct: 2041 IPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLP 2081
>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 32.3 bits (72), Expect = 0.98 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +2 Query: 338 GSPGQLGAAEP-AVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454 G+PG+ G P +R L G + RG PG RG+Q +G LP Sbjct: 706 GNPGEPGLRGPEGIRGLPGVEGPRGPPGPRGMQGEQGATGLP 747
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 32.3 bits (72), Expect = 0.98 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQ--GQQRGAPGDRGLQDAEGQGSLP 454 +G+ G+ G P+ P + G ++GAPGD GLQ G+ +P Sbjct: 264 KGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVP 305
>CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)| Length = 325 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +2 Query: 338 GSPGQLGAAEP-AVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454 G+PG+ G P +R L G + RG PG RG+Q +G LP Sbjct: 110 GNPGEPGLRGPEGIRGLPGVEGPRGPPGPRGVQGEQGATGLP 151
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 31.6 bits (70), Expect = 1.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 +G PG +G P + RG PG +G A+G G +P Sbjct: 1450 KGHPGLIGLIGPPGEQGEKGDRGLPGSQGSPGAKGDGGIP 1489
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451 RGS G++G A P P RG PG RGL A+G+ + Sbjct: 379 RGSTGEIGPAGPPGPP---GLRGNPGSRGLPGADGRAGV 414
>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor| Length = 1356 Score = 31.6 bits (70), Expect = 1.7 Identities = 19/37 (51%), Positives = 23/37 (62%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQG 445 RGS G++GA PA L+G RG G RGL EG+G Sbjct: 375 RGSTGEVGATGPA--GLRGA-RGGAGTRGLPGLEGRG 408
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 421 G+PG G A P+ P RGAPGDRG Sbjct: 765 GAPGDKGEAGPSGPPGPTGARGAPGDRG 792
>COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor| Length = 674 Score = 31.2 bits (69), Expect = 2.2 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQR-------GAPGDRGLQDAEGQGSLP 454 RG PG+ G EP V + GQ+ G PG+RGL +G LP Sbjct: 163 RGPPGEKG--EPGVPGINGQKGEMGFGVPGRPGNRGLPGPQGPQGLP 207
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 31.2 bits (69), Expect = 2.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 +G PG +G P + RG PG +G A+G G +P Sbjct: 1452 KGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP 1491
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG+ G PA R + + G PG GL+ +G LP Sbjct: 1020 GLPGEKGEPGPAARDGEKGEPGLPGQPGLRGPQGPPGLP 1058 Score = 30.8 bits (68), Expect = 2.9 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG G A P +P Q+G PG G+ A+G+ LP Sbjct: 930 GLPGVPGLAGPPGQPGFPGQKGQPGFPGVAGAKGEAGLP 968
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 G PG LG A PA + + + G PG+RGL G Sbjct: 215 GPPGALGPAGPAGKDGESGRPGRPGERGLPGPPG 248 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 GSPG G A P P + + G PG G A GQ P Sbjct: 782 GSPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEP 820
>COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 482 Score = 31.2 bits (69), Expect = 2.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 +G PG +G P + RG PG +G A+G G +P Sbjct: 128 KGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP 167
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 30.8 bits (68), Expect = 2.9 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451 RGS G+ G+A P P RG PG RGL A+G+ + Sbjct: 379 RGSNGEPGSAGP---PGPAGLRGEPGSRGLPGADGRAGV 414 Score = 29.3 bits (64), Expect = 8.3 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 +G G+ GAA P P GAPG GL + G+ LP Sbjct: 844 KGPSGEAGAAGPPGTPGPQGILGAPGILGLPGSRGERGLP 883
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 30.8 bits (68), Expect = 2.9 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 RG PG G P + G PGDRGL+ A+G Sbjct: 920 RGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKG 954
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 GSPG+ G P + QG G+PG++G + +GQ LP Sbjct: 1020 GSPGEKGV--PGIPGSQGVP-GSPGEKGAKGEKGQSGLP 1055 Score = 29.3 bits (64), Expect = 8.3 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 RGSPG +G P + +G PG G+ +G+ LP Sbjct: 1099 RGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLP 1138
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 RG PG G PA +RGAPG RG A+G Sbjct: 461 RGEPGPAGLPGPA------GERGAPGSRGFPGADG 489 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG+ G A +P + QRG PG +G + G LP Sbjct: 213 GPPGKNGDDGEAGKPGRPGQRGPPGPQGARGLPGTAGLP 251
>CO4A2_MOUSE (P08122) Collagen alpha-2(IV) chain precursor| Length = 1707 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 RG PG LG P P RGAPG G Q G ++P Sbjct: 1405 RGLPGALGEIGPQGPPGDPGFRGAPGKAGPQGRGGVSAVP 1444
>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +2 Query: 338 GSPGQLGAAEP-AVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454 G+PG+ G P R L G + RG PG RG+Q +G LP Sbjct: 706 GNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLP 747
>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor| Length = 1712 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = +2 Query: 335 RGSPGQLGAAEPAVR-----PLQGQQRGAPGDRGLQDAEGQGSLP 454 RG PG++ A+P R P Q +G PGDRG G +P Sbjct: 770 RGLPGEVLGAQPGPRGDAGVPGQPGLKGLPGDRGPPGFRGSQGMP 814 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 +G+PG++G + L+GQ RG PGD GL G Sbjct: 612 KGTPGEMGPPGLGLPGLKGQ-RGFPGDAGLPGPPG 645
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSL 451 RG G+ G+A P P RG+PG RGL A+G+ + Sbjct: 381 RGPNGEAGSAGPPGPP---GLRGSPGSRGLPGADGRAGV 416
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 RG G+ G+A P+ P RG+PG RGL A+G Sbjct: 381 RGPNGEAGSAGPSGPP---GLRGSPGSRGLPGADG 412
>COL40_CAEEL (P34804) Cuticle collagen 40| Length = 306 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQ--QRGAPGDRGLQDAEGQGSLP 454 G+PG GA+EP G GAPG+ G A G+ P Sbjct: 248 GNPGSAGASEPGPAGPAGDAGPDGAPGNAGAPGAPGEAGAP 288
>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor| Length = 1496 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 RG PG LG P +RGAPG+RG ++G Sbjct: 503 RGDPGTLGPPGPV------GERGAPGNRGFPGSDG 531
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 30.0 bits (66), Expect = 4.9 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 421 G G +GA P+ G +RGAPGDRG Sbjct: 490 GERGAVGATGPSGPAGPGGERGAPGDRG 517 Score = 29.3 bits (64), Expect = 8.3 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRPLQGQQ--RGAPGDRGLQDAEGQGSLP 454 RG+ G+ GA P R L G++ RGA G RG A+G+ LP Sbjct: 669 RGATGKQGARGP--RGLAGKRGLRGAGGSRGETGAQGEIGLP 708
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 29.6 bits (65), Expect = 6.4 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Frame = +2 Query: 335 RGSPGQLGAAEP------AVRPLQGQQRGAPGDRGLQDAEGQGSLPRQL 463 RG+PG+ G A P A P GA GDRG + +G+ P L Sbjct: 699 RGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPL 747
>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)| Length = 86 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG G A P G + G PG G+Q +G+ LP Sbjct: 4 GPPGPPGPPGSAGEPGPGGRPGFPGTPGMQGPQGERGLP 42
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 G+PG G A P+ +P + RG PG G++ +G Sbjct: 2864 GAPGVPGVAGPSGKPGKPGDRGTPGTPGMKGEKG 2897 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG GAA P G + G PG G+Q G+ +P Sbjct: 2949 GPPGPPGAAGTRGEPGPGGRPGFPGPPGVQGPPGERGMP 2987
>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)| (PSP-D) (CP4) Length = 374 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 13/53 (24%) Frame = +2 Query: 335 RGSPGQLGAAEPAVRP-------------LQGQQRGAPGDRGLQDAEGQGSLP 454 +G+PG GAA PA L+G RGAPGDRG+ +G+ LP Sbjct: 173 QGAPGNAGAAGPAGPAGPQGAPGSRGPPGLKGD-RGAPGDRGI---KGESGLP 221
>SFTPD_MOUSE (P50404) Pulmonary surfactant-associated protein D precursor (SP-D)| (PSP-D) Length = 374 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 13/54 (24%) Frame = +2 Query: 332 VRGSPGQLGAAEPAVRP-------------LQGQQRGAPGDRGLQDAEGQGSLP 454 V+G+PG GAA PA L+G RG PGDRG+ +G+ LP Sbjct: 172 VQGAPGNAGAAGPAGPAGPQGAPGSRGPPGLKGD-RGVPGDRGI---KGESGLP 221
>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor| Length = 1691 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = +2 Query: 314 G*DLLP-VRGSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 G D LP + GSPG L ++ A + G + GAPG++GLQ G Sbjct: 730 GKDGLPGMIGSPG-LPGSKGATGDIFGAENGAPGEQGLQGLTG 771
>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)| Length = 317 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 G+PG G A P+ +P + G PG GL+ +G Sbjct: 59 GTPGSPGVAGPSGKPGKPGDHGRPGQSGLKGEKG 92
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G+PG G A P P + ++G PG G A GQ P Sbjct: 627 GAPGVPGIAGPRGGPGERGEQGPPGPAGFPGAPGQNGEP 665
>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor| Length = 3119 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG G+A P G + G PG G+Q G+ LP Sbjct: 2946 GPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLP 2984
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 29.3 bits (64), Expect = 8.3 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Frame = +2 Query: 329 PVRGSPGQ-LGAAEPAVRPLQGQ--QRGAPGDRGLQDAEGQ-GSLPRQ 460 P +G GQ LG + +P QGQ Q+ A G +G Q +GQ G P Q Sbjct: 585 PAQGQQGQQLGQGQQGQQPGQGQQGQQPAQGQQGQQPGQGQHGQQPGQ 632
>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor| Length = 3063 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G PG G+A P G + G PG G+Q G+ LP Sbjct: 2945 GPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLP 2983
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G+PG G A P P + + G PG G A GQ P Sbjct: 783 GAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEP 821 Score = 29.3 bits (64), Expect = 8.3 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 G PG +G + PA + + + G PG+RGL G Sbjct: 216 GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPG 249
>M130_STRPU (P08472) Mesenchyme-specific cell surface glycoprotein precursor| (MSP130) Length = 779 Score = 29.3 bits (64), Expect = 8.3 Identities = 16/36 (44%), Positives = 16/36 (44%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQG 445 G PGQ G P P QG Q G G G GQG Sbjct: 310 GYPGQGGQGGPGYYPGQGGQGGQGGQGGWGQGGGQG 345
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEGQGSLP 454 G+PG G A P P + + G PG G A GQ P Sbjct: 782 GAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEP 820 Score = 29.3 bits (64), Expect = 8.3 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 Query: 338 GSPGQLGAAEPAVRPLQGQQRGAPGDRGLQDAEG 439 G PG +G + PA + + + G PG+RGL G Sbjct: 215 GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPG 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,719,685 Number of Sequences: 219361 Number of extensions: 905794 Number of successful extensions: 4395 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 3227 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4345 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
