ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29c09 |
|---|---|
| Clone Library Name | barley_pub |
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 72.8 bits (177), Expect = 4e-13 Identities = 40/108 (37%), Positives = 55/108 (50%) Frame = +2 Query: 152 DAEAMRAVAKALGADKLAGWGAGEPCSPRWPGVTCDSGGRVTAIQLRDKRLTGTLAPEVR 331 D AM ++ K+L GW +PC +W + C RVT IQ+ L GTL+P++R Sbjct: 28 DLSAMLSLKKSLNPPSSFGWSDPDPC--KWTHIVCTGTKRVTRIQIGHSGLQGTLSPDLR 85 Query: 332 NLTALTRLELFANXXXXXXXXXXXXXXXQYLNIHDNGFTSIPADFFKG 475 NL+ L RLEL N Q L + +N F SIP+D F+G Sbjct: 86 NLSELERLELQWNNISGPVPSLSGLASLQVLMLSNNNFDSIPSDVFQG 133 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/54 (38%), Positives = 30/54 (55%) Frame = +2 Query: 209 WGAGEPCSPRWPGVTCDSGGRVTAIQLRDKRLTGTLAPEVRNLTALTRLELFAN 370 W +PC+ W G+ C S G +T I L LTGT++PE + +L R+ L N Sbjct: 345 WKGNDPCT-NWIGIAC-SNGNITVISLEKMELTGTISPEFGAIKSLQRIILGIN 396 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = +2 Query: 260 SGGRVTAIQLRDKRLTGTLAPEVRNLTALTRLELFANXXXXXXXXXXXXXXXQYLNIHDN 439 +G +V ++ L ++LTG + ++N+T L + L +N + L++ DN Sbjct: 207 AGSQVQSLWLNGQKLTGDITV-LQNMTGLKEVWLHSNKFSGPLPDFSGLKELESLSLRDN 265 Query: 440 GFTS-IPA 460 FT +PA Sbjct: 266 SFTGPVPA 273
>BRL3_ARATH (Q9LJF3) Serine/threonine-protein kinase BRI1-like 3 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) Length = 1164 Score = 45.4 bits (106), Expect = 7e-05 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Frame = +2 Query: 209 WGAG-EPCSPRWPGVTCDSGGRVTAIQLRDKRLTGTLAPEVRNLTALTRLE---LFANXX 376 +G+G +PC+ W GV+C S GRV + LR+ LTGTL + NLTAL+ L L N Sbjct: 58 YGSGRDPCT--WRGVSCSSDGRVIGLDLRNGGLTGTL--NLNNLTALSNLRSLYLQGNNF 113 Query: 377 XXXXXXXXXXXXXQYLNIHDNGFT 448 + L++ N T Sbjct: 114 SSGDSSSSSGCSLEVLDLSSNSLT 137
>DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100 precursor| Length = 372 Score = 39.7 bits (91), Expect = 0.004 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 17/88 (19%) Frame = +2 Query: 149 QDAEAMRAVAKALGADKLA---GWGAGEPCSPRWPGVTCD-SGGRVTAIQLRDKR----- 301 +D A+ A +L L W C W G++CD GRVT I LR + Sbjct: 30 KDQTALNAFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIF 89 Query: 302 --------LTGTLAPEVRNLTALTRLEL 361 ++G++ P V +LTALT L L Sbjct: 90 QKAGRSGYMSGSIDPAVCDLTALTSLVL 117
>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) Length = 1166 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/40 (47%), Positives = 25/40 (62%) Frame = +2 Query: 239 WPGVTCDSGGRVTAIQLRDKRLTGTLAPEVRNLTALTRLE 358 W GV+C GR+ + LR+ LTGTL + NLTAL L+ Sbjct: 68 WRGVSCSDDGRIVGLDLRNSGLTGTL--NLVNLTALPNLQ 105
>CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1)| Length = 980 Score = 37.7 bits (86), Expect = 0.015 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 245 GVTCDSGGRVTAIQLRDKRLTGTLAPEVRNLTALTRLELFANXXXXXX-XXXXXXXXXQY 421 GV+CD RV ++ + L GT++PE+ LT L L L AN + Sbjct: 63 GVSCDDDARVISLNVSFTPLFGTISPEIGMLTHLVNLTLAANNFTGELPLEMKSLTSLKV 122 Query: 422 LNIHDNG 442 LNI +NG Sbjct: 123 LNISNNG 129
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 37.0 bits (84), Expect = 0.026 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = +2 Query: 149 QDAEAMRAVAKALG--ADKLAGWGAGEPCSP-RWPGVTCDSGGRVTAIQLRDKRLTGTLA 319 QDA +R L A L+ W +P +W GV+CD+ V ++ L L G Sbjct: 23 QDATILRQAKLGLSDPAQSLSSWSDNNDVTPCKWLGVSCDATSNVVSVDLSSFMLVGPFP 82 Query: 320 PEVRNLTALTRLELFAN 370 + +L +L L L+ N Sbjct: 83 SILCHLPSLHSLSLYNN 99
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 37.0 bits (84), Expect = 0.026 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Frame = +2 Query: 152 DAEAMRAVAKALGADK--LAGWGAG--EPCSPRWPGVTCDSGGRVTAIQLRDKRLTGTLA 319 + +A+ A+ +L L W A PC+ W VTC+S VT + L + L+G L Sbjct: 28 EGDALSALKNSLADPNKVLQSWDATLVTPCT--WFHVTCNSDNSVTRVDLGNANLSGQLV 85 Query: 320 PEVRNLTALTRLELFAN 370 ++ L L LEL++N Sbjct: 86 MQLGQLPNLQYLELYSN 102
>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1008 Score = 34.7 bits (78), Expect = 0.13 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = +2 Query: 152 DAEAMRAVAKALGADKLAGW---GAGEPCSPRWPGVTCDSG--GRVTAIQLRDKRLTGTL 316 D EA+R L K GW + C W G+TC+S GRV ++L +K+L+G L Sbjct: 35 DLEALRDFIAHL-EPKPDGWINSSSSTDCC-NWTGITCNSNNTGRVIRLELGNKKLSGKL 92 Query: 317 APEVRNLTALTRLELFAN 370 + + L + L L N Sbjct: 93 SESLGKLDEIRVLNLSRN 110
>RPK1_IPONI (P93194) Receptor-like protein kinase precursor (EC 2.7.11.1)| Length = 1109 Score = 34.7 bits (78), Expect = 0.13 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +2 Query: 182 ALGADKLAGWGAGE--PCSPRWPGVTCDSGGRVTAIQLRDKRLTGTLAPEVRNLTALTRL 355 ++ +D W A + PCS W GV CD V + L ++G PE+ +L L ++ Sbjct: 40 SIPSDITQSWNASDSTPCS--WLGVECDRRQFVDTLNLSSYGISGEFGPEISHLKHLKKV 97 Query: 356 ELFAN 370 L N Sbjct: 98 VLSGN 102
>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor| (Polygalacturonase-inhibiting protein) (Floral organ regulator 1) Length = 332 Score = 33.9 bits (76), Expect = 0.22 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +2 Query: 152 DAEAMRAVAKALGADK-LAGWGAGEPCSPRWPGVTCDSGGRVTAIQLRDKR-LTGTLAPE 325 D +A+ V ++LG L+ W W V CD GRV + + + G + Sbjct: 31 DKQALMRVKQSLGNPATLSTWSLASADCCEWDHVRCDEAGRVNNVFIDGANDVRGQIPSA 90 Query: 326 VRNLTALTRLELF 364 V LTAL L LF Sbjct: 91 VAGLTALMSLSLF 103
>SPDB_STRLI (P22408) Protein spdB| Length = 291 Score = 33.5 bits (75), Expect = 0.29 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 16/74 (21%) Frame = -1 Query: 441 PLSWMLRYWSESRP---ASEGSGP-------------ERLLAKSSRRVSAVRLRTSGASV 310 P SW L W + P A EGS L+ S RV+A R R G S Sbjct: 214 PPSWRLPVWGPTEPVPAAIEGSADVVPLSNEEIDGIMSGLVDSGSYRVAAGRFRDMGYSA 273 Query: 309 PVRRLSLSWMAVTR 268 RL SW VTR Sbjct: 274 GEARLQASWRRVTR 287
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 33.1 bits (74), Expect = 0.38 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Frame = +2 Query: 194 DKLAGWGAGEPCSP-RWPGVTCDSGGR---VTAIQLRDKRLTGTLAPEVRNLTALTRLEL 361 + L W +G+PC W GV CD +T + L L GT+ V +T L L L Sbjct: 378 EALESW-SGDPCMLFPWKGVACDGSNGSSVITKLDLSSSNLKGTIPSSVTEMTKLQILNL 436 Query: 362 FAN 370 N Sbjct: 437 SHN 439
>CYTSA_PANTR (Q2KNA1) Cytospin-A| Length = 1117 Score = 28.9 bits (63), Expect = 7.2 Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 10/79 (12%) Frame = -1 Query: 450 EVKPLSWMLRYWSESRPASEGSGPERLLAKS---SRRVSAVRLRTSGASVPVRRLSLSWM 280 E+ +LR S SRPAS GP AK+ SRR S R A SL M Sbjct: 910 EIPVQEHLLRTSSASRPASLPRGPAMESAKTLSVSRRSSEEMKRDISAQEGASPASLMAM 969 Query: 279 AVTRP-------PESQVTP 244 T P P + VTP Sbjct: 970 GTTSPQLSLSSSPTASVTP 988
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +2 Query: 158 EAMRAVAKALGADKLAGWGAGEPCSPRWPGVTCDSGGRVTAIQL 289 E MR +A A ++L+GW EP +P PG++ G +TA +L Sbjct: 303 ERMRELA-AFTRERLSGWRGLEPVTPAHPGLS----GAMTAFRL 341
>GALM_SHIFL (P0A9C4) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 28.9 bits (63), Expect = 7.2 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Frame = -1 Query: 471 LKKSAGMEVKPLSWMLRYWSESRPASEGSGPERLLAKSSRRVSAVRLRTSGAS------- 313 L+ +AGM V + W S P S+GS E LL +S + GAS Sbjct: 20 LRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANR 79 Query: 312 VPVRRLSLSWMAVTRPPESQVTPGHLGEQG 223 + R + VT P V H G +G Sbjct: 80 IANSRYTFDGETVTLSPSQGVNQLHGGPEG 109
>GALM_ECOLI (P0A9C3) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 28.9 bits (63), Expect = 7.2 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Frame = -1 Query: 471 LKKSAGMEVKPLSWMLRYWSESRPASEGSGPERLLAKSSRRVSAVRLRTSGAS------- 313 L+ +AGM V + W S P S+GS E LL +S + GAS Sbjct: 20 LRNNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANR 79 Query: 312 VPVRRLSLSWMAVTRPPESQVTPGHLGEQG 223 + R + VT P V H G +G Sbjct: 80 IANSRYTFDGETVTLSPSQGVNQLHGGPEG 109
>PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor| (Polygalacturonase-inhibiting protein) (PGIP-2) Length = 330 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +2 Query: 200 LAGWGAGEPCSPRWPGVTCDSGG---RVTAIQLRDKRLTGTLAPEVRNLTALTRL 355 LA W C W + C RVT++ ++D ++G + PEV +L LT L Sbjct: 46 LASWDPKTDCCS-WYCLECGDATVNHRVTSLIIQDGEISGQIPPEVGDLPYLTSL 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,165,566 Number of Sequences: 219361 Number of extensions: 416345 Number of successful extensions: 2059 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2057 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
