ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469561.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 131 2e-27
3emb|Y07748.1|OSTMK O.sativa mRNA for leucine rich repeat recepto... 131 2e-27
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 131 2e-27
6gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 46 0.10
7gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.41
8ref|XM_483826.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
9ref|XM_590956.2| PREDICTED: Bos taurus similar to Galactosylcera... 42 1.6
10emb|X92557.1|SEPCCBBCP S.erythraea pccB, bcpA2, and orfX genes 42 1.6
11emb|X92556.1|SEHGTABCP S.erythraea hgtA, bcpA1, and orf122 genes 42 1.6
12emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 42 1.6
13gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.6
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.6
16gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 42 1.6
17dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.6
20gb|AF017434.1|AF017434 Methylobacterium extorquens methanol oxid... 42 1.6
21ref|XM_550504.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
22ref|XM_522557.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 6.4
23ref|XM_469815.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
24ref|XM_507071.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.4
25gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.4
26ref|XM_426719.1| PREDICTED: Gallus gallus similar to seven in ab... 40 6.4
27gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genom... 40 6.4
28emb|AL591846.15| Human DNA sequence from clone RP11-343H5 on chr... 40 6.4
29gb|AC107020.4| Homo sapiens 12 BAC RP11-271J4 (Roswell Park Canc... 40 6.4
30gb|AY630576.1| Glossomastix chrysoplasta clone GcDES6f2 fatty ac... 40 6.4
31gb|AY630575.1| Glossomastix chrysoplasta clone GcDES6f1 fatty ac... 40 6.4
32emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercon... 40 6.4
33emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.4
34emb|AL831921.1|HSM803256 Homo sapiens mRNA; cDNA DKFZp761O2018 (... 40 6.4
35dbj|AK126715.1| Homo sapiens cDNA FLJ44761 fis, clone BRACE3031728 40 6.4
36gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 6.4
37ref|XM_941994.1| PREDICTED: Homo sapiens hypothetical protein DK... 40 6.4
38ref|XM_044062.10| PREDICTED: Homo sapiens hypothetical protein D... 40 6.4
39ref|XM_696107.1| PREDICTED: Danio rerio similar to pro-alpha 1 t... 40 6.4
40gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 6.4
41gb|AF503773.1| Aspergillus fumigatus multidrug resistance protei... 40 6.4
42dbj|AK017325.1| Mus musculus 6 days neonate head cDNA, RIKEN ful... 40 6.4
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
45gb|AC114734.4| Homo sapiens BAC clone CTD-2018D8 from 4, complet... 40 6.4
46dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
47dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
48dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
49dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
50dbj|AB107223.1| Pseudomonas sp. MIS38 orf1, arfA, arfB, arfC, or... 40 6.4
51dbj|AK111668.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
52gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.4
53gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.4
54gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.4
55gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.4
56emb|AL832160.1|HSM803467 Homo sapiens mRNA; cDNA DKFZp686H0514 (... 40 6.4
57gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromos... 40 6.4
58gb|AC138718.3| Mus musculus BAC clone RP23-221F8 from 14, comple... 40 6.4 
>ref|XM_469561.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3138

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Plus

                                                                       
Query: 300 gccttacggggacgctggcgcccgaggtccgcaacctcaccgcgctcacccgcctcgagc 359
           |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 326 gcctgacggggaggctggcgcccgaggtccgcaacctcaccgcgctcgcccgcctcgagc 385

                                                                       
Query: 360 tcttcgccaacagcctctccggcccgctgccctcgctggccggcctcgactcgctccagt 419
           |||||| ||||    ||||||||  ||| || ||||| || || |||   ||||| ||||
Sbjct: 386 tcttcgacaactcgatctccggcgagctcccgtcgctcgcggggctctcgtcgctgcagt 445

                                                                     
Query: 420 acctcaacatccacgacaacggcttcacctccatcccggcggatttcttcaaggggct 477
           ||||   | ||||| ||||||||||||||  ||||||| |||| ||||||||||||||
Sbjct: 446 acctgctcgtccacaacaacggcttcacccgcatcccgccggacttcttcaaggggct 503
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Minus

                                                                            
Query: 300      gccttacggggacgctggcgcccgaggtccgcaacctcaccgcgctcacccgcctcgagc 359
                |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 28724782 gcctgacggggaggctggcgcccgaggtccgcaacctcaccgcgctcgcccgcctcgagc 28724723

                                                                            
Query: 360      tcttcgccaacagcctctccggcccgctgccctcgctggccggcctcgactcgctccagt 419
                |||||| ||||    ||||||||  ||| || ||||| || || |||   ||||| ||||
Sbjct: 28724722 tcttcgacaactcgatctccggcgagctcccgtcgctcgcggggctctcgtcgctgcagt 28724663

                                                                          
Query: 420      acctcaacatccacgacaacggcttcacctccatcccggcggatttcttcaaggggct 477
                ||||   | ||||| ||||||||||||||  ||||||| |||| ||||||||||||||
Sbjct: 28724662 acctgctcgtccacaacaacggcttcacccgcatcccgccggacttcttcaaggggct 28724605



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 239      tggcccggggtgacctgcga 258
                ||||||||||||||||||||
Sbjct: 30908144 tggcccggggtgacctgcga 30908125
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>emb|Y07748.1|OSTMK O.sativa mRNA for leucine rich repeat receptor-like kinase
          Length = 3123

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Plus

                                                                       
Query: 300 gccttacggggacgctggcgcccgaggtccgcaacctcaccgcgctcacccgcctcgagc 359
           |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gcctgacggggaggctggcgcccgaggtccgcaacctcaccgcgctcgcccgcctcgagc 380

                                                                       
Query: 360 tcttcgccaacagcctctccggcccgctgccctcgctggccggcctcgactcgctccagt 419
           |||||| ||||    ||||||||  ||| || ||||| || || |||   ||||| ||||
Sbjct: 381 tcttcgacaactcgatctccggcgagctcccgtcgctcgcggggctctcgtcgctgcagt 440

                                                                     
Query: 420 acctcaacatccacgacaacggcttcacctccatcccggcggatttcttcaaggggct 477
           ||||   | ||||| ||||||||||||||  ||||||| |||| ||||||||||||||
Sbjct: 441 acctgctcgtccacaacaacggcttcacccgcatcccgccggacttcttcaaggggct 498
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Minus

                                                                            
Query: 300      gccttacggggacgctggcgcccgaggtccgcaacctcaccgcgctcacccgcctcgagc 359
                |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 28816106 gcctgacggggaggctggcgcccgaggtccgcaacctcaccgcgctcgcccgcctcgagc 28816047

                                                                            
Query: 360      tcttcgccaacagcctctccggcccgctgccctcgctggccggcctcgactcgctccagt 419
                |||||| ||||    ||||||||  ||| || ||||| || || |||   ||||| ||||
Sbjct: 28816046 tcttcgacaactcgatctccggcgagctcccgtcgctcgcggggctctcgtcgctgcagt 28815987

                                                                          
Query: 420      acctcaacatccacgacaacggcttcacctccatcccggcggatttcttcaaggggct 477
                ||||   | ||||| ||||||||||||||  ||||||| |||| ||||||||||||||
Sbjct: 28815986 acctgctcgtccacaacaacggcttcacccgcatcccgccggacttcttcaaggggct 28815929



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 239      tggcccggggtgacctgcga 258
                ||||||||||||||||||||
Sbjct: 30998667 tggcccggggtgacctgcga 30998648
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>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score =  131 bits (66), Expect = 2e-27
 Identities = 150/178 (84%)
 Strand = Plus / Minus

                                                                         
Query: 300   gccttacggggacgctggcgcccgaggtccgcaacctcaccgcgctcacccgcctcgagc 359
             |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 31763 gcctgacggggaggctggcgcccgaggtccgcaacctcaccgcgctcgcccgcctcgagc 31704

                                                                         
Query: 360   tcttcgccaacagcctctccggcccgctgccctcgctggccggcctcgactcgctccagt 419
             |||||| ||||    ||||||||  ||| || ||||| || || |||   ||||| ||||
Sbjct: 31703 tcttcgacaactcgatctccggcgagctcccgtcgctcgcggggctctcgtcgctgcagt 31644

                                                                       
Query: 420   acctcaacatccacgacaacggcttcacctccatcccggcggatttcttcaaggggct 477
             ||||   | ||||| ||||||||||||||  ||||||| |||| ||||||||||||||
Sbjct: 31643 acctgctcgtccacaacaacggcttcacccgcatcccgccggacttcttcaaggggct 31586
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 30/31 (96%), Gaps = 1/31 (3%)
 Strand = Plus / Minus

                                              
Query: 74      cggcggcgg-tcggccggcgccgtactggcc 103
               ||||||||| |||||||||||||||||||||
Sbjct: 1937703 cggcggcggatcggccggcgccgtactggcc 1937673
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 396     tggccggcctcgactcgctccagtac 421
               |||||||||||||||||||| |||||
Sbjct: 2555225 tggccggcctcgactcgctcaagtac 2555250



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 67      caccgcgcggcggcggtcggccggc 91
               |||||||||||||| ||||||||||
Sbjct: 4096205 caccgcgcggcggccgtcggccggc 4096229
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>ref|XM_483826.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1851

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 352 cctcgagctcttcgccaacagcctctccggccc 384
           |||||| |||| ||||||| |||||||||||||
Sbjct: 612 cctcgacctctccgccaaccgcctctccggccc 644
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>ref|XM_590956.2| PREDICTED: Bos taurus similar to Galactosylceramide sulfotransferase
            (GalCer sulfotransferase) (Cerebroside sulfotransferase)
            (3-phosphoadenylylsulfate:galactosylceramide
            3-sulfotransferase)
            (3-phosphoadenosine-5phosphosulfate:GalCer
            sulfotransferase) (LOC513295), mRNA
          Length = 1439

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 57   ccgccgcgtccaccgcgcggc 77
            |||||||||||||||||||||
Sbjct: 1228 ccgccgcgtccaccgcgcggc 1208
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>emb|X92557.1|SEPCCBBCP S.erythraea pccB, bcpA2, and orfX genes
          Length = 4473

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 72   cgcggcggcggtcggccggcg 92
            |||||||||||||||||||||
Sbjct: 3622 cgcggcggcggtcggccggcg 3642
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>emb|X92556.1|SEHGTABCP S.erythraea hgtA, bcpA1, and orf122 genes
          Length = 4120

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 72   cgcggcggcggtcggccggcg 92
            |||||||||||||||||||||
Sbjct: 3403 cgcggcggcggtcggccggcg 3423
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 91    cgccgtactggccctggccgtgctc 115
             ||||||||||||||| |||||||||
Sbjct: 23216 cgccgtactggccctcgccgtgctc 23240
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 82     gtcggccggcgccgtactggccctggccg 110
              ||||||||||| ||| |||||||||||||
Sbjct: 151781 gtcggccggcggcgttctggccctggccg 151753
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 352      cctcgagctcttcgccaacagcctctccggccc 384
                |||||| |||| ||||||| |||||||||||||
Sbjct: 28284627 cctcgacctctccgccaaccgcctctccggccc 28284595
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 74      cggcggcggtcggccggcgcc 94
               |||||||||||||||||||||
Sbjct: 6283955 cggcggcggtcggccggcgcc 6283975
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 183    cgctgggcgcggacaagctcgccgg 207
              |||||||||||||||||||| ||||
Sbjct: 487442 cgctgggcgcggacaagctccccgg 487466
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>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0044E16
          Length = 153296

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 352   cctcgagctcttcgccaacagcctctccggccc 384
             |||||| |||| ||||||| |||||||||||||
Sbjct: 13433 cctcgacctctccgccaaccgcctctccggccc 13401
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>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0705A05
          Length = 143765

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 352   cctcgagctcttcgccaacagcctctccggccc 384
             |||||| |||| ||||||| |||||||||||||
Sbjct: 76442 cctcgacctctccgccaaccgcctctccggccc 76410
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 427    catccacgacaacggcttcacctcc 451
              |||||||| ||||||||||||||||
Sbjct: 105899 catccacgtcaacggcttcacctcc 105875



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     gtccaccgcgcggcggcggt 83
              ||||||||||||||||||||
Sbjct: 442584 gtccaccgcgcggcggcggt 442603
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>gb|AF017434.1|AF017434 Methylobacterium extorquens methanol oxidation genes, mxaE, mxaH,
            mxaB, and pmi-like genes, complete cds
          Length = 4815

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 337  caccgcgctcacccgcctcga 357
            |||||||||||||||||||||
Sbjct: 1486 caccgcgctcacccgcctcga 1506
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>ref|XM_550504.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 252 cctgcgactccggcggccgc 271
           ||||||||||||||||||||
Sbjct: 746 cctgcgactccggcggccgc 765
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>ref|XM_522557.1| PREDICTED: Pan troglodytes similar to hypothetical protein
            (LOC467157), mRNA
          Length = 3144

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  agccctgctctcccaggtggcccg 245
            ||||| ||||||||||||||||||
Sbjct: 2063 agccccgctctcccaggtggcccg 2086
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>ref|XM_469815.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3744

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 tggcccggggtgacctgcga 258
           ||||||||||||||||||||
Sbjct: 190 tggcccggggtgacctgcga 209
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>ref|XM_507071.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0081K01.8
           patrial mRNA
          Length = 4315

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 tggcccggggtgacctgcga 258
           ||||||||||||||||||||
Sbjct: 190 tggcccggggtgacctgcga 209
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    cgcgcggcggcggtcggccggcgc 93
             |||||||||||| |||||||||||
Sbjct: 35747 cgcgcggcggcgctcggccggcgc 35724
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>ref|XM_426719.1| PREDICTED: Gallus gallus similar to seven in absentia homolog 2;
            seven in absentia (Drosophila) homolog 2 (LOC429164),
            mRNA
          Length = 3552

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 61   cgcgtccaccgcgcggcggcggtc 84
            ||||||| ||||||||||||||||
Sbjct: 1671 cgcgtcctccgcgcggcggcggtc 1648
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>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete
             sequence
          Length = 122496

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   tggcccggggtgacctgcga 258
             ||||||||||||||||||||
Sbjct: 34946 tggcccggggtgacctgcga 34965
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>emb|AL591846.15| Human DNA sequence from clone RP11-343H5 on chromosome 1 Contains the
              LGTN gene for ligatin, the DYRK3 gene for dual-specificity
              tyrosine-(Y)-phosphorylation regulated kinase 3, a novel
              gene, the MAPKAPK2 gene for mitogen-activated protein
              kinase-activated protein kinase 2, a ribosomal protein S14
              (RPS14) pseudogene and a CpG island, complete sequence
          Length = 195485

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    ccggcggccgcgtcacagcc 280
              ||||||||||||||||||||
Sbjct: 112881 ccggcggccgcgtcacagcc 112862
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>gb|AC107020.4| Homo sapiens 12 BAC RP11-271J4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 127125

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 222  agccctgctctcccaggtggcccg 245
            ||||| ||||||||||||||||||
Sbjct: 9671 agccccgctctcccaggtggcccg 9648
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>gb|AY630576.1| Glossomastix chrysoplasta clone GcDES6f2 fatty acid desaturase (D6)
            mRNA, complete cds
          Length = 1821

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   cgcgtccaccgcgcggcggc 80
            ||||||||||||||||||||
Sbjct: 1604 cgcgtccaccgcgcggcggc 1585
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>gb|AY630575.1| Glossomastix chrysoplasta clone GcDES6f1 fatty acid desaturase (D6)
            mRNA, complete cds
          Length = 1821

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   cgcgtccaccgcgcggcggc 80
            ||||||||||||||||||||
Sbjct: 1604 cgcgtccaccgcgcggcggc 1585
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>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3
          Length = 348551

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 277   agccatccagctcagggacaagcgcctt 304
             |||| ||||||||||||||||| |||||
Sbjct: 55663 agccttccagctcagggacaagagcctt 55690
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>emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment 17/24
          Length = 314250

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    tgccctcgctggccggcctc 406
              ||||||||||||||||||||
Sbjct: 182204 tgccctcgctggccggcctc 182223
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>emb|AL831921.1|HSM803256 Homo sapiens mRNA; cDNA DKFZp761O2018 (from clone DKFZp761O2018)
          Length = 3804

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  agccctgctctcccaggtggcccg 245
            ||||| ||||||||||||||||||
Sbjct: 1093 agccccgctctcccaggtggcccg 1116
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>dbj|AK126715.1| Homo sapiens cDNA FLJ44761 fis, clone BRACE3031728
          Length = 3810

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  agccctgctctcccaggtggcccg 245
            ||||| ||||||||||||||||||
Sbjct: 1115 agccccgctctcccaggtggcccg 1138
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 92      gccgtactggccctggccgtgctc 115
               |||| |||||||||||||||||||
Sbjct: 2360924 gccgcactggccctggccgtgctc 2360947
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>ref|XM_941994.1| PREDICTED: Homo sapiens hypothetical protein DKFZp761O2018
           (DKFZp761O2018), mRNA
          Length = 3621

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 222 agccctgctctcccaggtggcccg 245
           ||||| ||||||||||||||||||
Sbjct: 926 agccccgctctcccaggtggcccg 949
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>ref|XM_044062.10| PREDICTED: Homo sapiens hypothetical protein DKFZp761O2018
            (DKFZp761O2018), mRNA
          Length = 4428

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 222  agccctgctctcccaggtggcccg 245
            ||||| ||||||||||||||||||
Sbjct: 1733 agccccgctctcccaggtggcccg 1756
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>ref|XM_696107.1| PREDICTED: Danio rerio similar to pro-alpha 1 type V/XI collagen
            (LOC572396), mRNA
          Length = 2847

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 231  ctcccaggtggcccggggtgacct 254
            |||||||||||||||||| |||||
Sbjct: 2645 ctcccaggtggcccggggggacct 2622
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 60      ccgcgtccaccgcgcggcggcggt 83
               |||| |||||||||||||||||||
Sbjct: 3492508 ccgcctccaccgcgcggcggcggt 3492485
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>gb|AF503773.1| Aspergillus fumigatus multidrug resistance protein 4 (MDR4) gene,
           complete cds
          Length = 5300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 277 agccatccagctcagggacaagcgcctt 304
           |||| ||||||||||||||||| |||||
Sbjct: 636 agccttccagctcagggacaagagcctt 609
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>dbj|AK017325.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched
            library, clone:5430420E18 product:unclassifiable, full
            insert sequence
          Length = 1976

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 360  tcttcgccaacagcctctcc 379
            ||||||||||||||||||||
Sbjct: 1334 tcttcgccaacagcctctcc 1315
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 53       tcccccgccgcgtccaccgcgcggcggc 80
                ||||| ||||||||| ||||||||||||
Sbjct: 28778585 tccccggccgcgtcctccgcgcggcggc 28778612



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    cctgcgactccggcggccgc 271
              ||||||||||||||||||||
Sbjct: 856223 cctgcgactccggcggccgc 856204
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 70       cgcgcggcggcggtcggccggcgc 93
                ||||||||||||| ||||||||||
Sbjct: 25885940 cgcgcggcggcggccggccggcgc 25885917
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>gb|AC114734.4| Homo sapiens BAC clone CTD-2018D8 from 4, complete sequence
          Length = 78693

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   gagccctgctctcccaggtg 240
             ||||||||||||||||||||
Sbjct: 64058 gagccctgctctcccaggtg 64039
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>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0541H01
          Length = 157519

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    cctgcgactccggcggccgc 271
              ||||||||||||||||||||
Sbjct: 139357 cctgcgactccggcggccgc 139338
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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   cctgcgactccggcggccgc 271
             ||||||||||||||||||||
Sbjct: 37118 cctgcgactccggcggccgc 37099
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 53    tcccccgccgcgtccaccgcgcggcggc 80
             ||||| ||||||||| ||||||||||||
Sbjct: 86360 tccccggccgcgtcctccgcgcggcggc 86387
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>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_H11
          Length = 143314

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    cgcgcggcggcggtcggccggcgc 93
             ||||||||||||| ||||||||||
Sbjct: 37281 cgcgcggcggcggccggccggcgc 37258
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>dbj|AB107223.1| Pseudomonas sp. MIS38 orf1, arfA, arfB, arfC, orf5, orf6 genes for
            putative DNA binding protein, arthrofactin synthetase A,
            arthrofactin synthetase B, arthrofactin synthetase C,
            putative periplasmic protein, putative ABC transporter
            protein, complete and partial cds
          Length = 40430

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  cgctgccctcgctggccggc 403
            ||||||||||||||||||||
Sbjct: 3727 cgctgccctcgctggccggc 3708
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>dbj|AK111668.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153P21, full
           insert sequence
          Length = 4499

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 tggcccggggtgacctgcga 258
           ||||||||||||||||||||
Sbjct: 350 tggcccggggtgacctgcga 369
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     cgctgccctcgctggccggc 403
               ||||||||||||||||||||
Sbjct: 5938403 cgctgccctcgctggccggc 5938384
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      cgcggcggcggtcggccggc 91
               ||||||||||||||||||||
Sbjct: 3596264 cgcggcggcggtcggccggc 3596245
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 378    ccggcccgctgccctcgctggccg 401
              |||||||||||||||| |||||||
Sbjct: 144219 ccggcccgctgccctccctggccg 144196
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 62      gcgtccaccgcgcggcggcg 81
               ||||||||||||||||||||
Sbjct: 1020105 gcgtccaccgcgcggcggcg 1020086
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>emb|AL832160.1|HSM803467 Homo sapiens mRNA; cDNA DKFZp686H0514 (from clone DKFZp686H0514)
          Length = 3558

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 222 agccctgctctcccaggtggcccg 245
           ||||| ||||||||||||||||||
Sbjct: 720 agcccagctctcccaggtggcccg 743
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>gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromosome unknown, complete
              sequence
          Length = 168372

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    gctccagtacctcaacatcc 431
              ||||||||||||||||||||
Sbjct: 128417 gctccagtacctcaacatcc 128436
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>gb|AC138718.3| Mus musculus BAC clone RP23-221F8 from 14, complete sequence
          Length = 238536

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    tcttcgccaacagcctctcc 379
              ||||||||||||||||||||
Sbjct: 166252 tcttcgccaacagcctctcc 166271


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,568,716
Number of Sequences: 3902068
Number of extensions: 2568716
Number of successful extensions: 53993
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51706
Number of HSP's gapped (non-prelim): 2287
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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