Clone Name | bart29c02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.050 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 gaagggccgggaaactatactat 101 ||||||||||||||||||||||| Sbjct: 15519921 gaagggccgggaaactatactat 15519899
>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0049D13, complete sequence Length = 136942 Score = 46.1 bits (23), Expect = 0.050 Identities = 23/23 (100%) Strand = Plus / Minus Query: 79 gaagggccgggaaactatactat 101 ||||||||||||||||||||||| Sbjct: 46457 gaagggccgggaaactatactat 46435
>gb|DQ213119.1| Taeniopygia guttata clone 0058P0022A04 diencephalon AK020370 and hippocampus AK013845 transcripts-like mRNA, complete sequence Length = 867 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 gcggcggccgtggccgcggtg 176 ||||||||||||||||||||| Sbjct: 80 gcggcggccgtggccgcggtg 60
>gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427 geldanamycin biosynthesis gene cluster, partial sequence Length = 75920 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 gccgtggccgcggtgctggcc 182 ||||||||||||||||||||| Sbjct: 44683 gccgtggccgcggtgctggcc 44703
>gb|AY947889.1| Streptomyces hygroscopicus strain AM 3672 herbimycin polyketide biosynthetic gene cluster, complete sequence Length = 86941 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 ggccgtggccgcggtgctggc 181 ||||||||||||||||||||| Sbjct: 57298 ggccgtggccgcggtgctggc 57318
>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032N04, from chromosome 10, complete sequence Length = 159445 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gcggcggccgtggccgcggtg 176 ||||||||||||||||||||| Sbjct: 152213 gcggcggccgtggccgcggtg 152233
>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0019N10, from chromosome 10, complete sequence Length = 192267 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 gcggcggccgtggccgcggtg 176 ||||||||||||||||||||| Sbjct: 80167 gcggcggccgtggccgcggtg 80147
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gcggcggccgtggccgcggtg 176 ||||||||||||||||||||| Sbjct: 11834152 gcggcggccgtggccgcggtg 11834172
>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis gene cluster, partial sequence Length = 69644 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 gccgtggccgcggtgctggcc 182 ||||||||||||||||||||| Sbjct: 36902 gccgtggccgcggtgctggcc 36922
>dbj|AK106391.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E12, full insert sequence Length = 1381 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 gcggcggccgtggccgcggtg 176 ||||||||||||||||||||| Sbjct: 73 gcggcggccgtggccgcggtg 53
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gcggcggccgtggccgcggtg 176 ||||||||||||||||||||| Sbjct: 11841492 gcggcggccgtggccgcggtg 11841512
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gccgtggccgcggtgctggc 181 |||||||||||||||||||| Sbjct: 961720 gccgtggccgcggtgctggc 961739
>ref|XM_870615.1| PREDICTED: Bos taurus similar to phosphofurin acidic cluster sorting protein 2 (LOC618284), mRNA Length = 3010 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cgaggagagcggcggccgtg 167 |||||||||||||||||||| Sbjct: 73 cgaggagagcggcggccgtg 54
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 gcggccgtggccgcggtgctggcc 182 |||||||||||||| ||||||||| Sbjct: 82625 gcggccgtggccgccgtgctggcc 82648
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 gcggccgtggccgcggtgctggcc 182 |||||||||||||| ||||||||| Sbjct: 81003 gcggccgtggccgccgtgctggcc 81026
>emb|Z48053.1|BHV130KB Bovine herpesvirus type 1 (Cooper) DNA (30 kb) Length = 30000 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 gcggccgtggccgcggtgctggcc 182 |||||||||||||| ||||||||| Sbjct: 14104 gcggccgtggccgccgtgctggcc 14127
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 ggcggccgtggccgcggtgctggc 181 ||||||||||||||||| |||||| Sbjct: 134500 ggcggccgtggccgcggcgctggc 134523
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 ggcggccgtggccgcggtgctggc 181 ||||||||||||||||| |||||| Sbjct: 246870 ggcggccgtggccgcggcgctggc 246893
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 ggcggccgtggccgcggtgctggc 181 ||||||||||||||||| |||||| Sbjct: 231528 ggcggccgtggccgcggcgctggc 231551
>dbj|AB232916.1| Plutella xylostella GST3 gene for glutathione S-transferase, complete cds Length = 3811 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 tggccaccgtcacctcgctc 197 |||||||||||||||||||| Sbjct: 2312 tggccaccgtcacctcgctc 2331
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cggcggccgtggccgcggtg 176 |||||||||||||||||||| Sbjct: 4260796 cggcggccgtggccgcggtg 4260777
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cgcggtgctggccaccgtca 189 |||||||||||||||||||| Sbjct: 1116761 cgcggtgctggccaccgtca 1116742
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gccaccgtcacctcgctcct 199 |||||||||||||||||||| Sbjct: 764727 gccaccgtcacctcgctcct 764746
>dbj|AP005787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0501E09 Length = 150604 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gccaccgtcacctcgctcct 199 |||||||||||||||||||| Sbjct: 50066 gccaccgtcacctcgctcct 50085
>dbj|AP005591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0584E12 Length = 159071 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gccaccgtcacctcgctcct 199 |||||||||||||||||||| Sbjct: 137268 gccaccgtcacctcgctcct 137287
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ggccgcggtgctggccaccg 186 |||||||||||||||||||| Sbjct: 5363991 ggccgcggtgctggccaccg 5363972
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 gcggccgtggccgcggtgctggcc 182 ||||||||||||| |||||||||| Sbjct: 1756455 gcggccgtggccgaggtgctggcc 1756432
>dbj|AK063547.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D04, full insert sequence Length = 1483 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gccaccgtcacctcgctcct 199 |||||||||||||||||||| Sbjct: 448 gccaccgtcacctcgctcct 467
>gb|AY107804.1| Zea mays PCO104850 mRNA sequence Length = 1303 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 gcgcagctctcgccgtcgttctac 239 ||||||||||||||| |||||||| Sbjct: 176 gcgcagctctcgccgacgttctac 199
>gb|AF037032.1|AF037032 Zea mays peroxidase J gene, partial cds Length = 1065 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 gcgcagctctcgccgtcgttctac 239 ||||||||||||||| |||||||| Sbjct: 951 gcgcagctctcgccgacgttctac 974
>gb|U66342.1|PXU66342 Plutella xylostella glutathione S-transferase isozyme 3 (GST3) mRNA, complete cds Length = 809 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 tggccaccgtcacctcgctc 197 |||||||||||||||||||| Sbjct: 546 tggccaccgtcacctcgctc 565 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,572,624 Number of Sequences: 3902068 Number of extensions: 1572624 Number of successful extensions: 30946 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30594 Number of HSP's gapped (non-prelim): 352 length of query: 239 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 217 effective length of database: 17,147,199,772 effective search space: 3720942350524 effective search space used: 3720942350524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)