ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.050
2gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.050
3gb|DQ213119.1| Taeniopygia guttata clone 0058P0022A04 diencephal... 42 0.78
4gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus st... 42 0.78
5gb|AY947889.1| Streptomyces hygroscopicus strain AM 3672 herbimy... 42 0.78
6gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 42 0.78
7gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare str... 42 0.78
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.78
9gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 gelda... 42 0.78
10dbj|AK106391.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.78
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.78
12gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 3.1
13ref|XM_870615.1| PREDICTED: Bos taurus similar to phosphofurin a... 40 3.1
14gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete ge... 40 3.1
15emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome 40 3.1
16emb|Z48053.1|BHV130KB Bovine herpesvirus type 1 (Cooper) DNA (30... 40 3.1
17emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.1
18emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 3.1
19emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 40 3.1
20dbj|AB232916.1| Plutella xylostella GST3 gene for glutathione S-... 40 3.1
21gb|CP000249.1| Frankia sp. CcI3, complete genome 40 3.1
22gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 3.1
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
24dbj|AP005787.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
25dbj|AP005591.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
26dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.1
27emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 3.1
28dbj|AK063547.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.1
29gb|AY107804.1| Zea mays PCO104850 mRNA sequence 40 3.1
30gb|AF037032.1|AF037032 Zea mays peroxidase J gene, partial cds 40 3.1
31gb|U66342.1|PXU66342 Plutella xylostella glutathione S-transfera... 40 3.1

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 79       gaagggccgggaaactatactat 101
                |||||||||||||||||||||||
Sbjct: 15519921 gaagggccgggaaactatactat 15519899



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>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0049D13, complete sequence
          Length = 136942

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 79    gaagggccgggaaactatactat 101
             |||||||||||||||||||||||
Sbjct: 46457 gaagggccgggaaactatactat 46435



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>gb|DQ213119.1| Taeniopygia guttata clone 0058P0022A04 diencephalon AK020370 and
           hippocampus AK013845 transcripts-like mRNA, complete
           sequence
          Length = 867

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 156 gcggcggccgtggccgcggtg 176
           |||||||||||||||||||||
Sbjct: 80  gcggcggccgtggccgcggtg 60



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>gb|DQ249341.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427
             geldanamycin biosynthesis gene cluster, partial sequence
          Length = 75920

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   gccgtggccgcggtgctggcc 182
             |||||||||||||||||||||
Sbjct: 44683 gccgtggccgcggtgctggcc 44703



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>gb|AY947889.1| Streptomyces hygroscopicus strain AM 3672 herbimycin polyketide
             biosynthetic gene cluster, complete sequence
          Length = 86941

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 161   ggccgtggccgcggtgctggc 181
             |||||||||||||||||||||
Sbjct: 57298 ggccgtggccgcggtgctggc 57318



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>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 156    gcggcggccgtggccgcggtg 176
              |||||||||||||||||||||
Sbjct: 152213 gcggcggccgtggccgcggtg 152233



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>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0019N10, from chromosome 10, complete sequence
          Length = 192267

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 156   gcggcggccgtggccgcggtg 176
             |||||||||||||||||||||
Sbjct: 80167 gcggcggccgtggccgcggtg 80147



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 156      gcggcggccgtggccgcggtg 176
                |||||||||||||||||||||
Sbjct: 11834152 gcggcggccgtggccgcggtg 11834172



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>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis
             gene cluster, partial sequence
          Length = 69644

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   gccgtggccgcggtgctggcc 182
             |||||||||||||||||||||
Sbjct: 36902 gccgtggccgcggtgctggcc 36922



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>dbj|AK106391.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E12, full
           insert sequence
          Length = 1381

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 156 gcggcggccgtggccgcggtg 176
           |||||||||||||||||||||
Sbjct: 73  gcggcggccgtggccgcggtg 53



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 156      gcggcggccgtggccgcggtg 176
                |||||||||||||||||||||
Sbjct: 11841492 gcggcggccgtggccgcggtg 11841512



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    gccgtggccgcggtgctggc 181
              ||||||||||||||||||||
Sbjct: 961720 gccgtggccgcggtgctggc 961739



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>ref|XM_870615.1| PREDICTED: Bos taurus similar to phosphofurin acidic cluster
           sorting protein 2 (LOC618284), mRNA
          Length = 3010

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 cgaggagagcggcggccgtg 167
           ||||||||||||||||||||
Sbjct: 73  cgaggagagcggcggccgtg 54



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>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   gcggccgtggccgcggtgctggcc 182
             |||||||||||||| |||||||||
Sbjct: 82625 gcggccgtggccgccgtgctggcc 82648



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>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   gcggccgtggccgcggtgctggcc 182
             |||||||||||||| |||||||||
Sbjct: 81003 gcggccgtggccgccgtgctggcc 81026



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>emb|Z48053.1|BHV130KB Bovine herpesvirus type 1 (Cooper) DNA (30 kb)
          Length = 30000

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   gcggccgtggccgcggtgctggcc 182
             |||||||||||||| |||||||||
Sbjct: 14104 gcggccgtggccgccgtgctggcc 14127



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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 158    ggcggccgtggccgcggtgctggc 181
              ||||||||||||||||| ||||||
Sbjct: 134500 ggcggccgtggccgcggcgctggc 134523



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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 158    ggcggccgtggccgcggtgctggc 181
              ||||||||||||||||| ||||||
Sbjct: 246870 ggcggccgtggccgcggcgctggc 246893



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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 158    ggcggccgtggccgcggtgctggc 181
              ||||||||||||||||| ||||||
Sbjct: 231528 ggcggccgtggccgcggcgctggc 231551



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>dbj|AB232916.1| Plutella xylostella GST3 gene for glutathione S-transferase, complete
            cds
          Length = 3811

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  tggccaccgtcacctcgctc 197
            ||||||||||||||||||||
Sbjct: 2312 tggccaccgtcacctcgctc 2331



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     cggcggccgtggccgcggtg 176
               ||||||||||||||||||||
Sbjct: 4260796 cggcggccgtggccgcggtg 4260777



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     cgcggtgctggccaccgtca 189
               ||||||||||||||||||||
Sbjct: 1116761 cgcggtgctggccaccgtca 1116742



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    gccaccgtcacctcgctcct 199
              ||||||||||||||||||||
Sbjct: 764727 gccaccgtcacctcgctcct 764746



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>dbj|AP005787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0501E09
          Length = 150604

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   gccaccgtcacctcgctcct 199
             ||||||||||||||||||||
Sbjct: 50066 gccaccgtcacctcgctcct 50085



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>dbj|AP005591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0584E12
          Length = 159071

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    gccaccgtcacctcgctcct 199
              ||||||||||||||||||||
Sbjct: 137268 gccaccgtcacctcgctcct 137287



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     ggccgcggtgctggccaccg 186
               ||||||||||||||||||||
Sbjct: 5363991 ggccgcggtgctggccaccg 5363972



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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 159     gcggccgtggccgcggtgctggcc 182
               ||||||||||||| ||||||||||
Sbjct: 1756455 gcggccgtggccgaggtgctggcc 1756432



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>dbj|AK063547.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D04, full
           insert sequence
          Length = 1483

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 gccaccgtcacctcgctcct 199
           ||||||||||||||||||||
Sbjct: 448 gccaccgtcacctcgctcct 467



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>gb|AY107804.1| Zea mays PCO104850 mRNA sequence
          Length = 1303

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 216 gcgcagctctcgccgtcgttctac 239
           ||||||||||||||| ||||||||
Sbjct: 176 gcgcagctctcgccgacgttctac 199



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>gb|AF037032.1|AF037032 Zea mays peroxidase J gene, partial cds
          Length = 1065

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 216 gcgcagctctcgccgtcgttctac 239
           ||||||||||||||| ||||||||
Sbjct: 951 gcgcagctctcgccgacgttctac 974



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>gb|U66342.1|PXU66342 Plutella xylostella glutathione S-transferase isozyme 3 (GST3)
           mRNA, complete cds
          Length = 809

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 178 tggccaccgtcacctcgctc 197
           ||||||||||||||||||||
Sbjct: 546 tggccaccgtcacctcgctc 565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,572,624
Number of Sequences: 3902068
Number of extensions: 1572624
Number of successful extensions: 30946
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30594
Number of HSP's gapped (non-prelim): 352
length of query: 239
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 217
effective length of database: 17,147,199,772
effective search space: 3720942350524
effective search space used: 3720942350524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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