ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29b12 |
|---|---|
| Clone Library Name | barley_pub |
>BI1_ORYSA (Q9MBD8) Bax inhibitor 1 (BI-1) (OsBI-1)| Length = 249 Score = 147 bits (370), Expect = 3e-35 Identities = 73/83 (87%), Positives = 78/83 (93%), Gaps = 3/83 (3%) Frame = +3 Query: 312 MDAFYSTSSA---AASGWGHDSLKNFRQISPAVQSHLKLVYLTLCFALASSAVGAYLHIA 482 MDAFYSTSSA AASGWG+DSLKNFRQISPAVQSHLKLVYLTLC ALA+SAVGAYLH+A Sbjct: 1 MDAFYSTSSAYGAAASGWGYDSLKNFRQISPAVQSHLKLVYLTLCVALAASAVGAYLHVA 60 Query: 483 LNIGGMLTMLACVGTIAWMFSVP 551 LNIGGMLTML CVG+IAW+FSVP Sbjct: 61 LNIGGMLTMLGCVGSIAWLFSVP 83
>BI1_ARATH (Q9LD45) Bax inhibitor 1 (BI-1) (AtBI-1)| Length = 247 Score = 106 bits (265), Expect = 4e-23 Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 2/82 (2%) Frame = +3 Query: 312 MDAFYS--TSSAAASGWGHDSLKNFRQISPAVQSHLKLVYLTLCFALASSAVGAYLHIAL 485 MDAF S S + W +DSLKNFRQISPAVQ+HLK VYLTLC AL +SA GAYLH+ Sbjct: 1 MDAFSSFFDSQPGSRSWSYDSLKNFRQISPAVQNHLKRVYLTLCCALVASAFGAYLHVLW 60 Query: 486 NIGGMLTMLACVGTIAWMFSVP 551 NIGG+LT + C+GT+ W+ S P Sbjct: 61 NIGGILTTIGCIGTMIWLLSCP 82
>BI1_PAROL (Q9IA79) Probable Bax inhibitor 1 (BI-1)| Length = 237 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Frame = +3 Query: 363 DSLKNFRQISPAVQSHLKLVYLTLCFALASSAVGAYLHIALNI--GGMLTMLACVGTIAW 536 DSL F QIS + Q HLK VY +L + +A G+Y+H+ + GGML++L +G + W Sbjct: 11 DSLFKFSQISHSTQVHLKNVYSSLAVCMFVAAAGSYVHVVTRLFQGGMLSVLGSLGMMFW 70 Query: 537 MFSVP 551 + P Sbjct: 71 LAMTP 75
>BI1_PIG (Q66RM2) Bax inhibitor 1 (BI-1) (Testis-enhanced gene transcript)| Length = 237 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = +3 Query: 363 DSLKNFRQISPAVQSHLKLVYLTLCFALASSAVGAYLHIALNI--GGMLTMLACVGTIAW 536 D+L F I+P+ Q HLK VY + + +A GAY+H+ G+L+ L +G + W Sbjct: 11 DALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGSLGLMIW 70 Query: 537 MFSVP 551 + + P Sbjct: 71 LMATP 75
>BI1_MOUSE (Q9D2C7) Bax inhibitor 1 (BI-1) (Testis-enhanced gene transcript)| Length = 237 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = +3 Query: 363 DSLKNFRQISPAVQSHLKLVYLTLCFALASSAVGAYLHIALNI--GGMLTMLACVGTIAW 536 D+L F I+P+ Q HLK VY + + +A GAY+H+ + G+L+ L + + W Sbjct: 11 DALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLSALGSLALMIW 70 Query: 537 MFSVP 551 + + P Sbjct: 71 LMATP 75
>BI1_PONPY (Q5R7R1) Bax inhibitor 1 (BI-1) (Testis-enhanced gene transcript)| Length = 237 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = +3 Query: 363 DSLKNFRQISPAVQSHLKLVYLTLCFALASSAVGAYLHIALNI--GGMLTMLACVGTIAW 536 D+L F I+P+ Q HLK VY + + +A GAY+H+ + G+L+ L + + W Sbjct: 11 DALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLSALGSLILMIW 70 Query: 537 MFSVP 551 + + P Sbjct: 71 LMATP 75
>BI1_HUMAN (P55061) Bax inhibitor 1 (BI-1) (Testis-enhanced gene transcript)| (Transmembrane BAX inhibitor motif-containing protein 6) Length = 237 Score = 45.8 bits (107), Expect = 8e-05 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = +3 Query: 363 DSLKNFRQISPAVQSHLKLVYLTLCFALASSAVGAYLHIALNI--GGMLTMLACVGTIAW 536 D+L F I+P+ Q HLK VY + + +A GAY+H+ + G+L+ L + + W Sbjct: 11 DALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLSALGSLILMIW 70 Query: 537 MFSVP 551 + + P Sbjct: 71 LMATP 75
>BI1_RAT (P55062) Bax inhibitor 1 (BI-1) (Testis-enhanced gene transcript)| Length = 237 Score = 43.1 bits (100), Expect = 5e-04 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Frame = +3 Query: 363 DSLKNFRQISPAVQSHLKLVYLTLCFALASSAVGAYLHIALNI--GGMLTMLACVGTIAW 536 D+L F I+P+ Q HLK VY + + +A GAY+H+ G+L+ L + + Sbjct: 11 DALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLSALGALALMIC 70 Query: 537 MFSVP 551 + + P Sbjct: 71 LMATP 75
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 35.4 bits (80), Expect = 0.11 Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 6/86 (6%) Frame = +1 Query: 46 SPSSTR---ASPRHQPYISHPPSR-PTPSIVAVVITSVRNTSVHPSIQSSGEAKNRRRKI 213 SPS R SPR QP+ SHP SR PTP + SVR+ PS + A+ R Sbjct: 62 SPSPRRDRSLSPRDQPH-SHPRSRSPTPRSQSPSRRSVRS----PSPRQGSPARRVDRSS 116 Query: 214 HPKTRAQDKRGTLRA--RRGRPAPIR 285 P+ R+ R R+ RG+P P R Sbjct: 117 SPRARSPPPRRHSRSPPLRGQPPPPR 142
>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC| 2.7.11.23) Length = 706 Score = 26.6 bits (57), Expect(2) = 0.29 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = +3 Query: 120 HRRRRHHLGSKHVRPPIHPKQRRGEKQKEKNPPQNASAGQARNLACEARPPRS--DSIRR 293 H+RR V+PP KQ + ++++ +++ + R+ + + RPPR DS R Sbjct: 363 HKRREQEKNESKVQPPPREKQPPVREPRDRDRSRDSRPPRERD-SRDRRPPRGRYDSFER 421 Score = 26.2 bits (56), Expect(2) = 0.29 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%) Frame = +2 Query: 368 PQELPP-DLPRRAVPPQAR 421 P+ELPP DLP R +PP+ R Sbjct: 442 PRELPPRDLPPRDLPPRDR 460
>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)| (Ubiquitin thioesterase 42) (Ubiquitin-specific-processing protease 42) (Deubiquitinating enzyme 42) Length = 1325 Score = 33.9 bits (76), Expect = 0.31 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 8/96 (8%) Frame = +3 Query: 114 PFHRRRRHHLGSKHVRP-PIHPKQRRG---EKQKEKNPPQNASAGQARNLACEARPPRSD 281 PFH R H H RP H + RRG +++E++ P + AG LA P R Sbjct: 1076 PFHGGREHERAGLHERPHKDHNRGRRGCEPARERERHRPSSPRAGAPHALA--PHPDRFS 1133 Query: 282 SIRR---AGAGAGM-DAFYSTSSAAASGWGHDSLKN 377 R AG + D F+ + + HDS++N Sbjct: 1134 HDRTALVAGDNCNLSDRFHEHENGKSRKRRHDSVEN 1169
>T7L1B_BRARE (Q800Q5) Transcription factor 7-like 1-B (HMG box transcription| factor 3-B) (TCF-3-B) Length = 551 Score = 33.1 bits (74), Expect = 0.54 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = +1 Query: 19 SFSLAANQSSPSSTRASPR---HQPYISHPPSRPTPSIVAVVITSVRNTSVHPSIQSSGE 189 + ++ A+ SS S+R SP H P+ H P P+IV+ VI N + P + + Sbjct: 254 ALAMNASMSSLVSSRFSPHLVPHHPHGLHQTGIPHPAIVSPVIKQEPNGELSPPVNTKSP 313 Query: 190 AKNRR 204 N++ Sbjct: 314 GPNKK 318
>NOS3_MOUSE (P70313) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1201 Score = 33.1 bits (74), Expect = 0.54 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +1 Query: 49 PSSTRASPRHQPYISHPPSRPT-PSIVAVVITSVRNTSVHPSIQSSGEAKNRR 204 PS TRA+P H P ++ PP P P + + S+ ++ Q G +RR Sbjct: 44 PSPTRAAPDHSPPLTRPPDGPRFPRVKNWEVGSITYDTLSAQAQQDGPCTSRR 96
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 32.7 bits (73), Expect = 0.70 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 11/95 (11%) Frame = +1 Query: 28 LAANQSSPSSTRASPRHQPYISHPPSRPTPSI---------VAVVITSVRNTSVHPSIQS 180 + Q SP+ + A+PR P S P P P +A ++ S S S Sbjct: 2768 IRGTQDSPAQSAAAPRDAPVTSGPTRAPPPDSPTSLVPTPPLAPQVSQASTLSPSTSSMS 2827 Query: 181 SGEAKNRRRKI--HPKTRAQDKRGTLRARRGRPAP 279 + +A + + + P T + RG L ++ P+P Sbjct: 2828 ANQALSSLKAVGPPPATPPRKHRGLLATQQAEPSP 2862
>BRD1_SCHPO (Q09948) Bromodomain protein brd1| Length = 542 Score = 32.3 bits (72), Expect = 0.92 Identities = 23/62 (37%), Positives = 35/62 (56%) Frame = +1 Query: 7 SLSLSFSLAANQSSPSSTRASPRHQPYISHPPSRPTPSIVAVVITSVRNTSVHPSIQSSG 186 SL SFS + SP+++ +H+P P+ PTPS+ A + R+TSV PS +S Sbjct: 244 SLISSFSEQPKEHSPATS----KHEP--EETPASPTPSVSAST-SRERSTSVAPSFITSD 296 Query: 187 EA 192 +A Sbjct: 297 QA 298
>YN37_YEAST (P48563) Hypothetical 186.8 kDa protein in CLA4-PUS4 intergenic| region Length = 1636 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = +1 Query: 31 AANQSSPSSTRASPRHQPYISHPPSRPTPSIVAVVITSVRNTSVHPSIQSSGEAKNRRRK 210 ++NQ S + T S ++Q H + T S+ + S +N S SI S + K +R+ Sbjct: 542 SSNQYSFNDTSKSAKNQ----HTRNISTSSVTTSPVESTKNPS--RSIADSAQNKEMKRR 595 Query: 211 IHPKTRAQDKRGTLRA 258 +HP+ + + LRA Sbjct: 596 LHPRNISSRQVSLLRA 611
>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1| (WD-repeat protein 9) Length = 2304 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +1 Query: 148 RNTSVHPSIQSSGEAKNRRRKIHPKTRAQDKRGTL 252 R V PS+Q+S E +RR++HP+ +D G + Sbjct: 2097 RTAQVTPSLQASAEVGVKRRRMHPEVDGEDVPGQM 2131
>TMCC1_HUMAN (O94876) Transmembrane and coiled-coil domains protein 1| Length = 653 Score = 31.6 bits (70), Expect = 1.6 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +3 Query: 183 RRGEKQKEKNPPQ-NASAGQARNLACEARPPRSDSIRRAGAGAGMDAFYSTSSAAAS 350 RRG+ + K PQ N +GQ ++ PRS S A G+ M ++AAA+ Sbjct: 124 RRGKPEAPKGSPQINRKSGQEMTAVMQSGRPRSSSTTDAPTGSAMMEIACAAAAAAA 180
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 31.6 bits (70), Expect = 1.6 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +1 Query: 7 SLSLSFSLAANQSSPSSTRASPRHQPYISHPPSRPTPSIVAVVITSVRNTS 159 S S S S +QS+P+ + SP P++S P P+PS V + S ++ S Sbjct: 688 SASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRS 738
>VE2_HPV22 (P50768) Regulatory protein E2| Length = 436 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Frame = +1 Query: 34 ANQSS---PSSTRASPRHQPYISHPPSRPTPSIVAVVITSVRNTSVHPSIQSSGEAKNRR 204 A+Q+S P+ST SP+ ++H R S IT++R + E RR Sbjct: 208 ASQNSAPEPASTSDSPQRSSQVTHRYGRKASS---PTITTIRRQKRRE--RQRQETPTRR 262 Query: 205 RKIHPKTRAQDKRGTLRARR 264 RK ++R+ ++RG RR Sbjct: 263 RKTRSRSRSTEQRGGRATRR 282
>MID2_YEAST (P36027) Mating process protein MID2 (Serine-rich protein SMS1)| (Protein kinase A interference protein) Length = 376 Score = 30.8 bits (68), Expect = 2.7 Identities = 24/73 (32%), Positives = 35/73 (47%) Frame = +1 Query: 7 SLSLSFSLAANQSSPSSTRASPRHQPYISHPPSRPTPSIVAVVITSVRNTSVHPSIQSSG 186 S S+S + A ++SS SST+ S +S S P+ S ITS +TS PS + Sbjct: 121 SFSISSTSATSESSTSSTQTSTSSSSSLS---STPSSSSSPSTITSAPSTSSTPSTTAYN 177 Query: 187 EAKNRRRKIHPKT 225 + I+ KT Sbjct: 178 QGSTITSIINGKT 190
>ATF4_HUMAN (P18848) Cyclic AMP-dependent transcription factor ATF-4| (Activating transcription factor 4) (DNA-binding protein TAXREB67) (Cyclic AMP response element-binding protein 2) (CREB2) Length = 351 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/72 (29%), Positives = 30/72 (41%) Frame = +1 Query: 46 SPSSTRASPRHQPYISHPPSRPTPSIVAVVITSVRNTSVHPSIQSSGEAKNRRRKIHPKT 225 SP S SP+H P P+R PS V+ S R P + AK + K+ K Sbjct: 224 SPESYLGSPQHSPSTRGSPNRSLPS-PGVLCGSARPKPYDPPGEKMVAAKVKGEKLDKKL 282 Query: 226 RAQDKRGTLRAR 261 + ++ T R Sbjct: 283 KKMEQNKTAATR 294
>ZO1_HUMAN (Q07157) Tight junction protein ZO-1 (Zonula occludens 1 protein)| (Zona occludens 1 protein) (Tight junction protein 1) Length = 1748 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Frame = +1 Query: 19 SFSLAANQSSPSSTRASPRHQPYISHPPSRPTPSIVAVVITSVRNTSVH-PSIQSSGEAK 195 +F++ + S + + + R + + P SRP P V+ + +H P SG Sbjct: 89 AFAVQQLRKSGKNAKITIRRKKKVQIPVSRPDPEPVSDNEEDSYDEEIHDPRSGRSGVVN 148 Query: 196 NRRRKIHPKTRAQDKRGTLRARRGR 270 R KI P+ R+ + +L R R Sbjct: 149 RRSEKIWPRDRSASRERSLSPRSDR 173
>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 30.8 bits (68), Expect = 2.7 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 55 STRASPRHQPYISHPPSRPTPSIVAVVITSVRNTSVHPSIQSS 183 +T + H P PPSRP P+ +A + TSV + Q+S Sbjct: 121 ATPSEDGHTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQAS 163
>SYP1_YEAST (P25623) Suppressor of yeast profilin deletion| Length = 870 Score = 30.4 bits (67), Expect = 3.5 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 368 PQELPPDLPRRAVPPQARLPDS 433 P E+PP P+++ PP A+ PDS Sbjct: 444 PSEVPPSTPQQSSPPTAKEPDS 465
>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 30.0 bits (66), Expect = 4.5 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +3 Query: 120 HRRRRHHLGSKHVRPPIHPKQRRGEKQKEKNPPQN 224 HR RRHH +H H K R+ ++ +K+P ++ Sbjct: 1278 HRMRRHHHHHQHHHQHHHHKSRKERRKHKKHPTED 1312
>VE2_HPV41 (P27552) Regulatory protein E2| Length = 387 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 188 RRKTEGEKSTPKRERRTSEEPCVRGEAAPLRFDS 289 RR G +S+PK +RRT+ P RG F S Sbjct: 244 RRGAYGRRSSPKAQRRTAASPVSRGNGGSSDFTS 277
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/75 (28%), Positives = 30/75 (40%) Frame = +3 Query: 126 RRRHHLGSKHVRPPIHPKQRRGEKQKEKNPPQNASAGQARNLACEARPPRSDSIRRAGAG 305 RRRH S+ P P RR + + PP+ R RS RR + Sbjct: 297 RRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH------RRSRSPGRRRRRSS 350 Query: 306 AGMDAFYSTSSAAAS 350 A + S+SS++ S Sbjct: 351 ASLSGSSSSSSSSRS 365
>NOS3_RAT (Q62600) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1201 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 49 PSSTRASPRHQPYISHPPSRPT-PSIVAVVITSVRNTSVHPSIQSSGEAKNRR 204 PS TR +P H P ++ PP P P + + S+ ++ Q G RR Sbjct: 44 PSPTRPAPDHSPPLTRPPDGPKFPRVKNWEVGSITYDTLSAQAQQDGPCTPRR 96
>DPO3X_MYCTU (P63975) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)| Length = 578 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = +1 Query: 16 LSFSLAANQS--SPSSTRASPRHQPYIS-HPPSRPTPSIVAVVITSVRNTSVHPSIQSSG 186 L S+ A Q+ PS+ A P+HQP P PTP+ + +VR S+ P+++ Sbjct: 383 LDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPASSEPTVAAVR--SMWPTVRDKV 440 Query: 187 EAKNRRRKI 213 ++R ++ Sbjct: 441 RLRSRTTEV 449
>DPO3X_MYCBO (P63976) DNA polymerase III gamma/tau subunit (EC 2.7.7.7)| Length = 578 Score = 30.0 bits (66), Expect = 4.5 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = +1 Query: 16 LSFSLAANQS--SPSSTRASPRHQPYIS-HPPSRPTPSIVAVVITSVRNTSVHPSIQSSG 186 L S+ A Q+ PS+ A P+HQP P PTP+ + +VR S+ P+++ Sbjct: 383 LDMSIPAPQAVPRPSAAAAEPKHQPAREPRPVLAPTPASSEPTVAAVR--SMWPTVRDKV 440 Query: 187 EAKNRRRKI 213 ++R ++ Sbjct: 441 RLRSRTTEV 449
>ZO1_CANFA (O97758) Tight junction protein ZO-1 (Zonula occludens 1 protein)| (Zona occludens 1 protein) (Tight junction protein 1) Length = 1769 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%) Frame = +3 Query: 138 HLGSKHVRPPIHPKQRRGEKQKE-----KNPPQNASAGQARN 248 H G H RPP H + R +++ E ++ PQ S+G R+ Sbjct: 298 HSGRSHDRPPRHSRSRSPDQRSEPSDHSRHSPQQPSSGSLRS 339
>PAPOA_MOUSE (Q61183) Poly(A) polymerase alpha (EC 2.7.7.19) (PAP)| (Polynucleotide adenylyltransferase) Length = 738 Score = 29.6 bits (65), Expect = 5.9 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Frame = +1 Query: 7 SLSLSFSLAANQSSPSSTRA---SPRHQPYISHPPSRPTPSIVAVVITSVRNTSVH-PSI 174 SL LS + S PS T A SP + S + P P++ A +TS++ + V P Sbjct: 521 SLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTSIQASEVSVPQA 580 Query: 175 QSSGEAKNRRRKIHPKTRAQ 234 SS + P+T Q Sbjct: 581 NSSESPGGPSSESIPQTATQ 600
>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad| ubiquitination regulatory factor 1 homolog) (DSmurf) (Lethal with a checkpoint kinase protein) Length = 1061 Score = 29.6 bits (65), Expect = 5.9 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 18/91 (19%) Frame = +1 Query: 31 AANQSSPSSTRASPRHQ-----PYISHPPSRPTPSIVAVVITSVRN-------------T 156 AA +SPS+T + PRH P IS PP+ TPS V + N T Sbjct: 391 AATTTSPSTTTSPPRHSQSPPTPNIS-PPASVTPSANGNVHSPNANSTPAGSGGGSRSYT 449 Query: 157 SVHPSIQSSGEAKNRRRKIHPKTRAQDKRGT 249 + P Q S +R++ TR + RGT Sbjct: 450 AATPG-QRSQRRSSRQQGEESSTRRRSSRGT 479
>CSF3R_HUMAN (Q99062) Granulocyte colony-stimulating factor receptor precursor| (G-CSF-R) (CD114 antigen) Length = 836 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Frame = +3 Query: 387 ISPAVQSHLKLVYLTLCFALASSAV--------GAYLHIALNIGGMLTMLACVGTIAWMF 542 + PA H+ L+ + A S+ + G+ LHI L + G+L +L C+ AW+ Sbjct: 590 LEPASLYHIHLMAASQAGATNSTVLTLMTLTPEGSELHIILGLFGLLLLLTCLCGTAWLC 649 Query: 543 SVP 551 P Sbjct: 650 CSP 652
>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)| Length = 428 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = +3 Query: 159 RPPIHPKQRRGEKQKEKNPPQNASAGQARNLACEARPPRSDSIRRAGAGAGMDAF--YST 332 +PP P Q + Q + PPQ + G+ + A A + + G+ + F Y Sbjct: 187 QPPHLPSQPAQQPQPQSQPPQTSHPGKMQEAAAVAAAAAAAAAAAVGSVGRLSQFPPYGL 246 Query: 333 SSAAAS 350 SAAA+ Sbjct: 247 GSAAAA 252
>UBP3_SCHPO (O94269) Probable ubiquitin carboxyl-terminal hydrolase 3 (EC| 3.1.2.15) (Ubiquitin thioesterase 3) (Ubiquitin-specific processing protease 3) (Deubiquitinating enzyme 3) Length = 512 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 258 EARPPRSDSIRRAGAGAGMDAFYSTSSAAASGW 356 + R P+SD G +G+D+F SS ASGW Sbjct: 256 DERNPKSDIKISNGIKSGLDSFDDQSSVEASGW 288
>CXCC1_HUMAN (Q9P0U4) CpG-binding protein (PHD finger and CXXC domain-containing| protein 1) (CXXC finger protein 1) Length = 656 Score = 29.3 bits (64), Expect = 7.8 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 171 HPKQR-RGEKQKEKNPPQNASAGQARNLACEARPPRSDSIRRAGAGAGMDAFYSTSSAA 344 H K R R +++ + P++ G+ R + P D RRAG+G G+ A + SA+ Sbjct: 86 HKKSRERDGNERDSSEPRDEGGGRKRPV------PDPDLQRRAGSGTGVGAMLARGSAS 138
>SSN6_YEAST (P14922) Glucose repression mediator protein| Length = 966 Score = 29.3 bits (64), Expect = 7.8 Identities = 24/91 (26%), Positives = 37/91 (40%) Frame = +1 Query: 37 NQSSPSSTRASPRHQPYISHPPSRPTPSIVAVVITSVRNTSVHPSIQSSGEAKNRRRKIH 216 N+S+ + T ASP P I P +P + NT + S QS+ + ++ H Sbjct: 419 NKSNGAPTNASPAPPPVILQPTLQPNDQ------GNPLNTRI--SAQSANATASMVQQQH 470 Query: 217 PKTRAQDKRGTLRARRGRPAPIRFDAQAQAQ 309 P + G ++ AQAQAQ Sbjct: 471 PAQQTPINSSATMYSNGASPQLQAQAQAQAQ 501
>IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2| Length = 841 Score = 29.3 bits (64), Expect = 7.8 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Frame = +3 Query: 159 RPPIHPKQRRGEKQKEKNPPQNASAGQ---ARNLACEARPPRSDSIRRAGAGAG 311 +P + RG + KN P AS + A +A SDS RR G G G Sbjct: 188 KPRADDRNARGGDGERKNAPHRASVKEKAPAPRVAPRTTDEESDSFRRGGRGKG 241
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/75 (28%), Positives = 30/75 (40%) Frame = +3 Query: 126 RRRHHLGSKHVRPPIHPKQRRGEKQKEKNPPQNASAGQARNLACEARPPRSDSIRRAGAG 305 RRRH S+ P P RR + + PP+ R RS RR + Sbjct: 299 RRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH------RRSRSPVRRRRRSS 352 Query: 306 AGMDAFYSTSSAAAS 350 A + S+SS++ S Sbjct: 353 ASLSGSSSSSSSSRS 367
>YOR3_ADEG1 (P20745) Hypothetical protein (ORF 3) (Fragment)| Length = 126 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = +3 Query: 132 RHHLGSKHVRPPIH----PKQRRGEKQKEKNPPQNASAGQARNLACEARPPRS 278 RH + + H+ P I+ P R E +E PPQN + G + PP + Sbjct: 68 RHRILNVHIGPCIYSVPPPLDRSHESPEEFFPPQNRNRGGGPKAQIQRHPPEA 120
>WRN_MOUSE (O09053) Werner syndrome ATP-dependent helicase homolog (EC| 3.6.1.-) Length = 1401 Score = 29.3 bits (64), Expect = 7.8 Identities = 18/71 (25%), Positives = 35/71 (49%) Frame = +3 Query: 279 DSIRRAGAGAGMDAFYSTSSAAASGWGHDSLKNFRQISPAVQSHLKLVYLTLCFALASSA 458 D +++ + G+ + S WGHD +FR + ++++ L LV + A ASS+ Sbjct: 615 DLLQKLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLG-SLKTALPLVPVIALSATASSS 673 Query: 459 VGAYLHIALNI 491 + + LN+ Sbjct: 674 IREDIISCLNL 684
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/75 (28%), Positives = 30/75 (40%) Frame = +3 Query: 126 RRRHHLGSKHVRPPIHPKQRRGEKQKEKNPPQNASAGQARNLACEARPPRSDSIRRAGAG 305 RRRH S+ P P RR + + PP+ R RS RR + Sbjct: 299 RRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRH------RRSRSPVRRRRRSS 352 Query: 306 AGMDAFYSTSSAAAS 350 A + S+SS++ S Sbjct: 353 ASLSGSSSSSSSSRS 367 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,955,102 Number of Sequences: 219361 Number of extensions: 1327210 Number of successful extensions: 6704 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 5866 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6666 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
