ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart29b11 |
|---|---|
| Clone Library Name | barley_pub |
>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 64.7 bits (156), Expect = 1e-10 Identities = 31/72 (43%), Positives = 47/72 (65%) Frame = +2 Query: 293 WCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLTHLIL 472 W +RGG+A+E+A L FNVHP+ M+IG + L +A++VY+VF T K+ H +L Sbjct: 35 WLGAYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKILHGLL 91 Query: 473 HAIAIVLGAVGI 508 H +A V+ VG+ Sbjct: 92 HVLAFVIALVGL 103
>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 63.9 bits (154), Expect = 3e-10 Identities = 32/76 (42%), Positives = 47/76 (61%) Frame = +2 Query: 281 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 460 M W +RGG+A+E+A L FNVHP+ M+IG + L +A++VY+VF T K+ Sbjct: 31 MTGAWLGMYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKVL 87 Query: 461 HLILHAIAIVLGAVGI 508 H +LH A V+ VG+ Sbjct: 88 HGLLHVFAFVIALVGL 103
>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 63.5 bits (153), Expect = 3e-10 Identities = 32/76 (42%), Positives = 47/76 (61%) Frame = +2 Query: 281 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 460 M W +RGG+A+E+A L FNVHP+ M+IG + L +A++VY+VF T K+ Sbjct: 31 MTGAWLGMYRGGIAWESA---LQFNVHPLCMVIGLVFLQGDALLVYRVFRNEAKRTTKVL 87 Query: 461 HLILHAIAIVLGAVGI 508 H +LH A V+ VG+ Sbjct: 88 HGLLHVFAFVIALVGL 103
>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/76 (40%), Positives = 47/76 (61%) Frame = +2 Query: 281 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 460 M W +RGG+A+E+ +L FN HP+ M+IG I L +A++VY+VF T K+ Sbjct: 30 MTGAWLGLYRGGIAWES---DLQFNAHPLCMVIGLIFLQGDALLVYRVFRNEAKRTTKVL 86 Query: 461 HLILHAIAIVLGAVGI 508 H +LH A+V+ VG+ Sbjct: 87 HGLLHIFALVIALVGL 102
>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)| Length = 250 Score = 61.2 bits (147), Expect = 2e-09 Identities = 30/72 (41%), Positives = 46/72 (63%) Frame = +2 Query: 293 WCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLTHLIL 472 W +RGG+A+E++ L FNVHP+ M+IG I L +A++VY+VF T K+ H +L Sbjct: 33 WLGLYRGGIAWESS---LQFNVHPLCMVIGMIFLQGDALLVYRVFRREAKRTTKILHGLL 89 Query: 473 HAIAIVLGAVGI 508 H A ++ VG+ Sbjct: 90 HVFAFIIALVGL 101
>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 60.5 bits (145), Expect = 3e-09 Identities = 31/76 (40%), Positives = 46/76 (60%) Frame = +2 Query: 281 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 460 M W +RGG+A+E+ +L FN HP+ M+IG I L A++VY+VF T K+ Sbjct: 30 MTGAWLGLYRGGIAWES---DLQFNAHPLCMVIGLIFLQGNALLVYRVFRNEAKRTTKVL 86 Query: 461 HLILHAIAIVLGAVGI 508 H +LH A+V+ VG+ Sbjct: 87 HGLLHIFALVIALVGL 102
>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)| Length = 247 Score = 53.1 bits (126), Expect = 4e-07 Identities = 23/55 (41%), Positives = 37/55 (67%) Frame = +2 Query: 344 LIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLTHLILHAIAIVLGAVGI 508 L FNVHP+ M++G + L EA++VY+VF + K+ H +LH +A+V+ VG+ Sbjct: 48 LQFNVHPLCMVLGMVFLCGEALLVYRVFRHETKRSTKILHGVLHIMALVISLVGV 102
>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)| Length = 266 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/70 (34%), Positives = 39/70 (55%) Frame = +2 Query: 281 MVLVWCIHFRGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLT 460 +V +W F G A+ + + FN HP M++G + L EA++VY+VF +K Sbjct: 38 LVTIWMSKFESGFAWNE-DPDKEFNYHPTFMIMGMVFLFGEALLVYRVFRNERKKFSKTL 96 Query: 461 HLILHAIAIV 490 H+ILH+ +V Sbjct: 97 HVILHSCVLV 106
>C56D2_HUMAN (O14569) Cytochrome b561 domain-containing protein 2 (Putative| tumor suppressor protein 101F6) Length = 222 Score = 33.5 bits (75), Expect = 0.36 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Frame = +2 Query: 347 IFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAK----LTHLILHAIAIVLGAVGI 508 +F+ HPVLM + F L +EA++V+ L H ++ H +L +A++ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGL 101
>C56D2_BOVIN (Q5E965) Cytochrome b561 domain-containing protein 2| Length = 222 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Frame = +2 Query: 347 IFNVHPVLMLIGFIILGSEAIMVY----KVFPGLNHDTAKLTHLILHAIAIVLGAVGI 508 +F+ HPVLM + F L +EA++V+ + L+ H +L +A++ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLVFSPESSLLRSLSRKGRARCHWVLQLLALLCALLGL 101
>5HT2C_RAT (P08909) 5-hydroxytryptamine 2C receptor (5-HT-2C) (Serotonin| receptor 2C) (5-HT2C) (5-HTR2C) (5HT-1C) Length = 460 Score = 30.8 bits (68), Expect = 2.4 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Frame = +2 Query: 125 GRECAAPAPTGDQRKKKKEEDAGVRGEMAIALGVKATPFTYXXXXXXXXXXXMVLVWCIH 304 G E AP P DQ+ ++K+++ RG M K +++WC Sbjct: 275 GEEENAPNPNPDQKPRRKKKEKRPRGTMQAINNEKK-----ASKVLGIVFFVFLIMWCPF 329 Query: 305 F----RGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVF 427 F L +A N+ L+ + V + IG++ G +VY +F Sbjct: 330 FITNILSVLCGKACNQKLMEKLLNVFVWIGYVCSGINP-LVYTLF 373
>C56D2_RAT (Q641Y1) Cytochrome b561 domain-containing protein 2| Length = 222 Score = 30.8 bits (68), Expect = 2.4 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Frame = +2 Query: 347 IFNVHPVLMLIGFIILGSEAIMVY----KVFPGLNHDTAKLTHLILHAIAIVLGAVGI 508 +F+ HPVLM + F L +EA++++ + L+ H +L +A++ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGL 101
>C56D2_MOUSE (Q9WUE3) Cytochrome b561 domain-containing protein 2 (Putative| tumor suppressor protein 101F6) Length = 222 Score = 30.8 bits (68), Expect = 2.4 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Frame = +2 Query: 347 IFNVHPVLMLIGFIILGSEAIMVY----KVFPGLNHDTAKLTHLILHAIAIVLGAVGI 508 +F+ HPVLM + F L +EA++++ + L+ H +L +A++ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGL 101
>RPOP_MAIZE (P10581) Probable DNA-directed RNA polymerase (EC 2.7.7.6) (S-2 DNA| ORF1) Length = 1098 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = -3 Query: 469 DQVGQLGSIVVQSRKYLVDHYGFTAEDNETDQHKNRVDVEDEVLVGRL 326 D + ++G ++ K+L DH A NE Q+K+ VE+ ++ R+ Sbjct: 933 DSIFRMGHPLIIINKFLFDHILIPAIQNEHPQNKHLFSVEERSMLDRM 980
>APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [Contains:| Apolipoprotein B-48 (Apo B-48)] Length = 4563 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -3 Query: 427 KYLVDHYGFTAEDNETDQHKNRVDVEDEVLVGRLEGEAAAEVDA 296 K LVDH+G+T +D N + + E L+ L+ + E A Sbjct: 732 KVLVDHFGYTKDDKHEQDMVNGIMLSVEKLIKDLKSKEVPEARA 775
>HSP42_YEAST (Q12329) Heat shock protein 42 (42 kDa heat shock protein)| Length = 375 Score = 28.9 bits (63), Expect = 9.0 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Frame = -3 Query: 517 GAVDPNGAEDDGDRVEDQVGQLGSIVVQ-------SRKYLVDHYGFTAEDNETDQHKNRV 359 G D +G E+D D ED VG G+ + SR+Y ++ TA +N T+Q N + Sbjct: 85 GYDDEDGEEEDQD--EDMVGDSGTTRQEDGGEDSNSRRYPSYYHCNTARNNRTNQQANSL 142 Query: 358 DVEDEVLVG 332 + L+G Sbjct: 143 NDLLTALIG 151
>5HT2C_MOUSE (P34968) 5-hydroxytryptamine 2C receptor (5-HT-2C) (Serotonin| receptor 2C) (5-HT2C) (5-HTR2C) (5HT-1C) Length = 459 Score = 28.9 bits (63), Expect = 9.0 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%) Frame = +2 Query: 140 APAPTGDQRKKKKEEDAGVRGEMAIALGVKATPFTYXXXXXXXXXXXMVLVWCIHF---- 307 AP P DQ+ ++K+++ RG M K +++WC F Sbjct: 279 APNPNPDQKPRRKKKEKRPRGTMQAINNEKK-----ASKVLGIVFFVFLIMWCPFFITNI 333 Query: 308 RGGLAFEAANKNLIFNVHPVLMLIGFIILGSEAIMVYKVF 427 L +A N+ L+ + V + IG++ G +VY +F Sbjct: 334 LSVLCGKACNQKLMEKLLNVFVWIGYVCSGINP-LVYTLF 372
>C56D1_HUMAN (Q8N8Q1) Cytochrome b561 domain-containing protein 1| Length = 229 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Frame = +2 Query: 347 IFNVHPVLMLIGFIILGSEAIMVYKVFPGLNHDTAKLTHLILH----AIAIVLGAVGI 508 +F+ HPV M + F + +EAI+++ L ++ + LH +AI+ A+G+ Sbjct: 51 LFSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGL 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,402,328 Number of Sequences: 219361 Number of extensions: 929078 Number of successful extensions: 3420 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3415 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
