ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1... 29 0.71
2CIC_DROME (Q9U1H0) Putative transcription factor capicua (Protei... 32 1.8

>KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-)|
           (MURUS3 protein)
          Length = 619

 Score = 28.9 bits (63), Expect(2) = 0.71
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 260 EDDPVGRLKVYVYELPTKYNKKMVAKDSRCLS 355
           + DP G   +YV+ LP+K+N+ M+ +D + LS
Sbjct: 147 KSDPCGGKYIYVHNLPSKFNEDML-RDCKKLS 177



 Score = 22.7 bits (47), Expect(2) = 0.71
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
 Frame = +3

Query: 363 FAAEIFMHRFLLSSAIRTMNPEEADWFYTPVYTTCDLTP--WGHPLPFKSPRIMRSAVQF 536
           FA ++     +      T +   A   + P Y   D+    WG+ +        R A   
Sbjct: 213 FAVDVIFSNRMKQYKCLTNDSSLAAAIFVPFYAGFDIARYLWGYNIS------RRDAASL 266

Query: 537 ISSHW----PYWNRTAGADHFFV 593
               W    P W+   G DHF V
Sbjct: 267 ELVDWLMKRPEWDIMRGKDHFLV 289



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>CIC_DROME (Q9U1H0) Putative transcription factor capicua (Protein fettucine)|
          Length = 1403

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
 Frame = -1

Query: 533  LNCTPHDPRRLEGQRMAPRSKVTGGVHRSVEPVGLLRVHGPDRARQQEPVHEYL----GG 366
            +  TP  P     + M    K +GG     E  G L+ H      +QEP   Y      G
Sbjct: 778  IGVTPFQPTGGAFKSMPISPKGSGG---KPEDAGSLQAHIKQEDIKQEPPSPYKLNNGSG 834

Query: 365  KTCG*GTWSPWPPSSCCTWWAARRRTPSAS----RQDHPPAHHQH 243
               G G  S  PP+S           P+A+    +Q H P HH H
Sbjct: 835  SASGGGVVSAPPPNSGSVGAIFNFNVPTATALSQKQFHYPMHHPH 879


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,226,835
Number of Sequences: 219361
Number of extensions: 1406365
Number of successful extensions: 4144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4140
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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