>SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71)|
          Length = 266

 Score =  187 bits (476), Expect = 1e-47
 Identities = 96/162 (59%), Positives = 120/162 (74%)
 Frame = +3

Query: 96  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQE 275
           MTVIDILTRVD+IC+KYDKYD +K   AN++G+D FARLYG+ + +I   +EKAE   +E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 276 KNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 455
           KNRAA VA+NAEIRR KA+L EE +PKLQRLA+K+VKGLT EELA R+DLV ALP RI++
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEE-VPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEA 119

Query: 456 IPDGSSSATKKNXXXXXXXXXXXXXVKFDSTSDGNFDDEYFK 581
           IPDG++   K               +KFD  SDG FDD+YF+
Sbjct: 120 IPDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQ 159

>SYP72_ARATH (Q94KK6) Syntaxin-72 (AtSYP72)|
          Length = 267

 Score =  154 bits (389), Expect = 2e-37
 Identities = 81/162 (50%), Positives = 110/162 (67%)
 Frame = +3

Query: 96  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQE 275
           M VIDI+ RVD IC+KYDKYD +K      +G+D F+RL+ S+D++I   + KAE A  E
Sbjct: 1   MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query: 276 KNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 455
           KNRAA VA+NAE+RR KA+ L ED+ KLQ+LA+KK+KGLT+EE  +R DLV AL DR+Q+
Sbjct: 61  KNRAAAVAMNAEVRRTKAR-LAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQA 119

Query: 456 IPDGSSSATKKNXXXXXXXXXXXXXVKFDSTSDGNFDDEYFK 581
           IPDG+    K+              +KFD  S+ + DD +F+
Sbjct: 120 IPDGNEHGAKQANSDWGGASAPNKNIKFD-MSEEDMDDGFFQ 160

>SYP73_ARATH (Q94KK5) Syntaxin-73 (AtSYP73)|
          Length = 263

 Score =  145 bits (366), Expect = 8e-35
 Identities = 78/165 (47%), Positives = 109/165 (66%), Gaps = 1/165 (0%)
 Frame = +3

Query: 96  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQE 275
           M VID++TRVD+IC+KY+KYD  +   ANV+G+D F+RLY +V+  +   ++K E    E
Sbjct: 1   MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60

Query: 276 KNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 455
            N+A  VA+NAEIRR KA+LL E +PKLQRL+LKKVKGL+KEEL  R+DLV +L D+I++
Sbjct: 61  TNKAKAVAMNAEIRRTKARLL-EGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEA 119

Query: 456 IPDGSSSATKKNXXXXXXXXXXXXXVKFD-STSDGNFDDEYFKGT 587
           IP+ S+                   ++FD + SD     EYF+ T
Sbjct: 120 IPESSAPVV-----GGWEASTSYSNIRFDTNVSDDRIGSEYFQPT 159

>Y410_LISIN (Q7AP31) UPF0365 protein lin0410|
          Length = 314

 Score = 36.2 bits (82), Expect = 0.072
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
 Frame = +3

Query: 219 SVDAEISQCV---EKAEA-ARQEKNRAAVVALNAEIRRAKAKLLEE 344
           + D E++Q      KAEA A +++NRAAVVA  AE+ RA ++ LEE
Sbjct: 239 NADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPRALSRALEE 284

>Y404_LISMF (Q723S2) UPF0365 protein LMOf2365_0404|
          Length = 314

 Score = 36.2 bits (82), Expect = 0.072
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
 Frame = +3

Query: 219 SVDAEISQCV---EKAEA-ARQEKNRAAVVALNAEIRRAKAKLLEE 344
           + D E++Q      KAEA A +++NRAAVVA  AE+ RA ++ LEE
Sbjct: 239 NADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPRALSRALEE 284

>Y392_LISMO (Q92EP8) UPF0365 protein lmo0392|
          Length = 314

 Score = 36.2 bits (82), Expect = 0.072
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
 Frame = +3

Query: 219 SVDAEISQCV---EKAEA-ARQEKNRAAVVALNAEIRRAKAKLLEE 344
           + D E++Q      KAEA A +++NRAAVVA  AE+ RA ++ LEE
Sbjct: 239 NADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPRALSRALEE 284

>BIN3_XENLA (Q5PPZ5) Bridging integrator 3 homolog|
          Length = 252

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +3

Query: 93  EMTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQ 272
           ++  + ++T +D   ++ D ++ EK+N       DP  R Y SV   ++  V++ E A Q
Sbjct: 74  DVDFLQMVTALDTAMKRMDAFNQEKVNQIQKTVMDPLKR-YSSVFPSLNMAVKRREQALQ 132

Query: 273 EKNR 284
           +  R
Sbjct: 133 DYKR 136

>CLPB_RICCN (Q92JK8) Chaperone clpB|
          Length = 857

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
 Frame = +3

Query: 102 VIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYG---------SVDAEISQCVEK 254
           +I I   + A+ ++ D++  +K+     A E   ++ Y          S   +  +  E+
Sbjct: 420 IIQIKIELAALKKENDEHSKKKIEHLTTALEKLESQSYDMGAKWQAEKSKLQQTQKLKEE 479

Query: 255 AEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAA 434
            + +R E  RA   A  A+    K  ++ E + KLQ       KGL K E+ + SD +A+
Sbjct: 480 LDRSRNELERAERDANLAKASELKYGIIPEIMKKLQEAESMDNKGLLK-EIVSESD-IAS 537

Query: 435 LPDRIQSIP 461
           +  RI  IP
Sbjct: 538 IISRITGIP 546

>RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase|
          Length = 883

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +3

Query: 108 DILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQEKNRA 287
           ++L ++    +K  +YD EKL  AN   E+   +L G ++ EI    ++ +     K + 
Sbjct: 502 EVLEQIRETEEKLKEYDLEKLEEANEKAEELKKKLAG-LEGEIKSLEDEIKKGELLKKKL 560

Query: 288 AVVALN-AEIRRAKAKLLEEDLPKLQRLALKKVKGL 392
           A+V     E+   +A LL E    L++L    VK L
Sbjct: 561 ALVEKKLRELEEERASLLGE----LKKLGFGDVKEL 592

>WBL_DROME (O44342) Protein windbeutel precursor (Erp29 homolog)|
          Length = 257

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +3

Query: 225 DAEISQCVEKAEAAR-------QEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKV 383
           DAE  + +EK +A +       Q++N  A +    +I       LEE+  +L RL   KV
Sbjct: 165 DAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKV 224

Query: 384 KGLTKEELATRSDLV 428
               KEEL  + +++
Sbjct: 225 TEAKKEELLRKLNIL 239

>DESP_HUMAN (P15924) Desmoplakin (DP) (250/210 kDa paraneoplastic pemphigus|
            antigen)
          Length = 2871

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 240  QCVEKAEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRL--ALKKVKGLTKEELAT 413
            Q +E +   ++ KN+   V    E    K K+LE+D  +LQRL   L + K   + E   
Sbjct: 1790 QALEASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRV 1849

Query: 414  RSDL 425
            +  L
Sbjct: 1850 KQRL 1853

>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 (BBC1 protein)|
          Length = 1157

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 138 QKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQEKNRAAV 293
           QK ++  A++  G NVA E      YG  D E     EK E   +E  RAA+
Sbjct: 369 QKVEESQADEARGENVAEESEIG--YGHEDREGDNDEEKEEEDSEENRRAAL 418

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
 Frame = +3

Query: 150  KYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQEKNRAA--VVALNAEIRRA 323
            K +AE+        E+   R     + E+ +  + AE   Q++  A   ++ L AE  + 
Sbjct: 1803 KEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQG 1862

Query: 324  KAK--LLEEDLPKLQR---LALKKVKGLTKEELATRSDLVAALPDRIQSIPDGSSSATK 485
            + +  LLEE+L +LQR    A +K + L  E    R+++   L  + ++  +  S++ K
Sbjct: 1863 EQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKAKAEEESRSTSEK 1921

>Y763_TREPA (O83744) Hypothetical protein TP0763|
          Length = 313

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 22/52 (42%), Positives = 29/52 (55%)
 Frame = +3

Query: 276 KNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVA 431
           KNR  +  L+AE   A A LLEE++    R+AL++V  L  E L   SD  A
Sbjct: 97  KNRRLLRYLDAEDWSALAALLEEEVFTRNRVALRRV-SLLSESLILLSDFEA 147

>CLPB_RICPR (Q9ZEA9) Chaperone clpB|
          Length = 858

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +3

Query: 249 EKAEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLV 428
           E+ E AR +  RA   A  A+    K  ++ E + KLQ       KGL K E+ + SD +
Sbjct: 478 EELEQARIDLERAERDANLAKASELKYGIIPEIMNKLQEAENMDNKGLLK-EIVSESD-I 535

Query: 429 AALPDRIQSIP 461
           A++  RI  IP
Sbjct: 536 ASIISRITGIP 546

>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
 Frame = +3

Query: 84   RAAEMTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEA 263
            +A E+     L + DA  QK +   AE+        E+   R     + E+ +  + AE 
Sbjct: 1573 QAEEVAQQRSLAQADAEKQKEE---AEREARRRGKAEEQAVRQRELAEQELEKQRQLAEG 1629

Query: 264  ARQEKNRAA--VVALNAEIRRAKAK--LLEEDLPKLQR---LALKKVKGLTKEELATRSD 422
              Q++  A   ++ L AE  + + +  LLEE+L +LQR    A  K + L  E    R++
Sbjct: 1630 TAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQREATAATHKRQELEAELAKVRAE 1689

Query: 423  LVAALPDRIQSIPDGSSSATK 485
            +   L  + ++  +  S++ K
Sbjct: 1690 MEVLLASKARAEEESRSTSEK 1710

>RK122_SECCE (Q06036) 50S ribosomal protein L12-2, chloroplast precursor|
           (CL12-2)
          Length = 174

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 243 CVEKAEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLA-LKKVKGLTKEELATRS 419
           CV  A          A     A + + +  ++ E++P   R+A +K V+ LT   L    
Sbjct: 79  CVSAASFPPAAAGLRAAAVEEAPVEQTEFDVVIEEVPSSARIATIKIVRALTNLALKEAK 138

Query: 420 DLVAALPDRIQ 452
           DL+  LP +++
Sbjct: 139 DLIEGLPKKLK 149

>RK121_SECCE (Q06030) 50S ribosomal protein L12-1, chloroplast precursor|
           (CL12-1)
          Length = 174

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 243 CVEKAEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLA-LKKVKGLTKEELATRS 419
           CV  A          A     A + + +  ++ E++P   R+A +K V+ LT   L    
Sbjct: 79  CVSAASFPPAAAGLRAAAVEEAPVEQTEFDVVIEEVPSSARIATIKIVRALTNLALKEAK 138

Query: 420 DLVAALPDRIQ 452
           DL+  LP +++
Sbjct: 139 DLIEGLPKKLK 149

>RK12_GUITH (O78414) Chloroplast 50S ribosomal protein L12|
          Length = 129

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +3

Query: 255 AEAARQEKNRAAVVA----LNAEIRRAKAKLLEEDLPKLQRLA-LKKVKGLTKEELATRS 419
           A AA    N  A  A      A   + +  L+ ED+P  +++A LK V+GLT   L    
Sbjct: 34  ATAAAAPINMVAATAGAGSAEAVEEKTEFDLILEDVPADKKIAVLKVVRGLTGLGLKEAK 93

Query: 420 DLVAALPDRIQSIPDGSSSA 479
           DLV A P   + I +G S A
Sbjct: 94  DLVEAAP---KPIKEGMSKA 110

>YNH4_CAEEL (P32742) Putative serine/threonine-protein kinase R107.4 (EC|
           2.7.11.1)
          Length = 820

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = +3

Query: 240 QCVEKAEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKE 401
           QC+++A+ AR+E  R A V+++ E   A AK L +D   L RL    + G+ +E
Sbjct: 526 QCIQQAKRAREELERHAKVSMDIE---ACAKQLSKDAEDL-RLEDMDLPGICEE 575

>PROA_DESDG (Q311G6) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 419

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 26/77 (33%), Positives = 37/77 (48%)
 Frame = +3

Query: 219 SVDAEISQCVEKAEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTK 398
           S  A+ S  +  A+  RQE N+A   A   ++  A  + L  D P++ RL L        
Sbjct: 25  SPSAKTSALLSLAQLIRQE-NKAITEANARDLAAAADRGL--DAPRMDRLRLTDA---VI 78

Query: 399 EELATRSDLVAALPDRI 449
           EE+A   + VA LPD I
Sbjct: 79  EEMARACEFVAGLPDPI 95

>YAQ5_SCHPO (Q10105) Putative translational activator C18G6.05c (GCN1 homolog)|
          Length = 2670

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
 Frame = +3

Query: 126  DAICQKYDKYDAEKLNGANVAGEDPFARLYGSV-----DAEISQCVEKAEAARQEKNRAA 290
            +AI Q  D+  AE      +      A+LYG++     DA+  Q +E    + + ++  +
Sbjct: 2405 EAIEQLLDEISAESSEHMVIC-----AKLYGALFSHLPDAQAKQLLESKVLSLEIQSEFS 2459

Query: 291  VVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQSIPDGS 470
            V+ LNA ++    K++E  L  +   ++     L KE     + ++A     +  IP   
Sbjct: 2460 VLILNAAVKFGSQKIIELKLSDIV-CSIISTASLQKEVTIAENGILALGKALLADIPQSF 2518

Query: 471  SSA 479
             +A
Sbjct: 2519 GNA 2521

>RNP3_METMP (P60781) Ribonuclease P protein component 3 (EC 3.1.26.5) (RNase P|
           component 3)
          Length = 232

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +3

Query: 138 QKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQEKNRAAVVAL---NA 308
           Q +++Y  EK+N A   GE+   ++Y  V        E  +A ++ +N+  ++ +   + 
Sbjct: 32  QNHNEYSEEKINTAVEYGENCEFKVYSGVKISTKNQNEMEKAVKKYRNKVDILLVEGGDV 91

Query: 309 EIRRAKAKLLEEDL---PKLQRL 368
           +I R   ++ + D+   P+L R+
Sbjct: 92  KINRRVLEMNDVDILSTPELNRM 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,054,909
Number of Sequences: 219361
Number of extensions: 781274
Number of successful extensions: 3047
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3043
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)