ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29b02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192269.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1386 Score = 335 bits (169), Expect = 1e-88 Identities = 241/265 (90%) Strand = Plus / Plus Query: 318 ccgcggcgtcgtccgccgcctcggccatcgatttcctcactctctgccatagcctcaaga 377 ||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||| |||| Sbjct: 470 ccgcggcgtcgtctgcctcctcggccatcgatttcctcaccctctgccatcgccttaaga 529 Query: 378 ccactaaaaggaaaggctggataaatcacagcatcaagggtcccgagtctattgctgatc 437 ||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||| Sbjct: 530 ccactaaaaggaaaggctggataaaccatagcataaagggtcctgagtctattgctgatc 589 Query: 438 acatgtatcgtatggcactgatggctttgatcgctgatgacctacctgctgtaaatcgag 497 ||||||| |||||||| || ||||||||||| || | |||||||||||||||| |||||| Sbjct: 590 acatgtaccgtatggcccttatggctttgattgccggtgacctacctgctgtagatcgag 649 Query: 498 aaaggtgtatcaaaatagctatcgttcatgacattgctgaagctattgttggcgacatca 557 |||| || |||||||| |||||||| |||||||||||||||||||||||||| ||||| | Sbjct: 650 aaagatgcatcaaaattgctatcgtgcatgacattgctgaagctattgttggtgacatta 709 Query: 558 ctccatctgacggcatacctaaagc 582 ||||||| ||||| ||||||||||| Sbjct: 710 ctccatccgacggtatacctaaagc 734 Score = 40.1 bits (20), Expect = 7.9 Identities = 44/52 (84%) Strand = Plus / Plus Query: 214 ccgcgctgtctccgggagccctgggcaaggcggatcgcccgtgcccaggcgg 265 |||||| | |||||||| |||||| | |||||||||||||| || |||||| Sbjct: 372 ccgcgccgcctccgggatccctggacccggcggatcgcccgtccctaggcgg 423
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 375 agaccactaaaaggaaaggctggataaatcacagcatcaagggtcccgagtctattgctg 434 |||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||| Sbjct: 25756975 agaccactaaaaggaaaggctggataaaccatagcataaagggtcctgagtctattgctg 25757034 Query: 435 atcacatgtatcgtatggcactgatggctttgatcgctgatgacctacctgctgtaaatc 494 |||||||||| |||||||| || ||||||||||| || | |||||||||||||||| ||| Sbjct: 25757035 atcacatgtaccgtatggcccttatggctttgattgccggtgacctacctgctgtagatc 25757094 Query: 495 gagaaaggt 503 ||||||||| Sbjct: 25757095 gagaaaggt 25757103 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 318 ccgcggcgtcgtccgccgcctcggccatcgatttcctcactctctgccatagcct 372 ||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||| Sbjct: 25756517 ccgcggcgtcgtctgcctcctcggccatcgatttcctcaccctctgccatcgcct 25756571 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 538 agctattgttggcgacatcactccatctgacggcatacctaaagc 582 |||||||||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 25757499 agctattgttggtgacattactccatccgacggtatacctaaagc 25757543 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 506 atcaaaatagctatcgttcatgacattgctgaag 539 |||||||| |||||||| |||||||||||||||| Sbjct: 25757280 atcaaaattgctatcgtgcatgacattgctgaag 25757313 Score = 40.1 bits (20), Expect = 7.9 Identities = 44/52 (84%) Strand = Plus / Plus Query: 214 ccgcgctgtctccgggagccctgggcaaggcggatcgcccgtgcccaggcgg 265 |||||| | |||||||| |||||| | |||||||||||||| || |||||| Sbjct: 25756419 ccgcgccgcctccgggatccctggacccggcggatcgcccgtccctaggcgg 25756470
>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039G05 Length = 138429 Score = 168 bits (85), Expect = 1e-38 Identities = 118/129 (91%) Strand = Plus / Plus Query: 375 agaccactaaaaggaaaggctggataaatcacagcatcaagggtcccgagtctattgctg 434 |||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||| Sbjct: 59439 agaccactaaaaggaaaggctggataaaccatagcataaagggtcctgagtctattgctg 59498 Query: 435 atcacatgtatcgtatggcactgatggctttgatcgctgatgacctacctgctgtaaatc 494 |||||||||| |||||||| || ||||||||||| || | |||||||||||||||| ||| Sbjct: 59499 atcacatgtaccgtatggcccttatggctttgattgccggtgacctacctgctgtagatc 59558 Query: 495 gagaaaggt 503 ||||||||| Sbjct: 59559 gagaaaggt 59567 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 318 ccgcggcgtcgtccgccgcctcggccatcgatttcctcactctctgccatagcct 372 ||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||| Sbjct: 58981 ccgcggcgtcgtctgcctcctcggccatcgatttcctcaccctctgccatcgcct 59035 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 538 agctattgttggcgacatcactccatctgacggcatacctaaagc 582 |||||||||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 59963 agctattgttggtgacattactccatccgacggtatacctaaagc 60007 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 506 atcaaaatagctatcgttcatgacattgctgaag 539 |||||||| |||||||| |||||||||||||||| Sbjct: 59744 atcaaaattgctatcgtgcatgacattgctgaag 59777 Score = 40.1 bits (20), Expect = 7.9 Identities = 44/52 (84%) Strand = Plus / Plus Query: 214 ccgcgctgtctccgggagccctgggcaaggcggatcgcccgtgcccaggcgg 265 |||||| | |||||||| |||||| | |||||||||||||| || |||||| Sbjct: 58883 ccgcgccgcctccgggatccctggacccggcggatcgcccgtccctaggcgg 58934
>ref|NM_102381.2| Arabidopsis thaliana catalytic AT1G26160 mRNA, complete cds Length = 1154 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 495 gagaaaggtgtatcaaaatagctatcgttcatgacattgctgaagctattgttggcgaca 554 ||||||||||||| ||||| || || || ||||| || ||||||||||||||||| || | Sbjct: 411 gagaaaggtgtataaaaatggcaattgtgcatgatatcgctgaagctattgttggagata 470 Query: 555 tcactccatctga 567 | || |||||||| Sbjct: 471 ttaccccatctga 483
>gb|AY113965.1| Arabidopsis thaliana unknown protein (At1g26160) mRNA, complete cds Length = 808 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 495 gagaaaggtgtatcaaaatagctatcgttcatgacattgctgaagctattgttggcgaca 554 ||||||||||||| ||||| || || || ||||| || ||||||||||||||||| || | Sbjct: 377 gagaaaggtgtataaaaatggcaattgtgcatgatatcgctgaagctattgttggagata 436 Query: 555 tcactccatctga 567 | || |||||||| Sbjct: 437 ttaccccatctga 449
>gb|AY056247.1| Arabidopsis thaliana unknown protein (At1g26160) mRNA, complete cds Length = 1171 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 495 gagaaaggtgtatcaaaatagctatcgttcatgacattgctgaagctattgttggcgaca 554 ||||||||||||| ||||| || || || ||||| || ||||||||||||||||| || | Sbjct: 411 gagaaaggtgtataaaaatggcaattgtgcatgatatcgctgaagctattgttggagata 470 Query: 555 tcactccatctga 567 | || |||||||| Sbjct: 471 ttaccccatctga 483
>emb|BX818491.1|CNS0ACOV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL82ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1087 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 495 gagaaaggtgtatcaaaatagctatcgttcatgacattgctgaagctattgttggcgaca 554 ||||||||||||| ||||| || || || ||||| || ||||||||||||||||| || | Sbjct: 390 gagaaaggtgtataaaaatggcaattgtgcatgatatcgctgaagctattgttggagaga 449 Query: 555 tcactccatctga 567 | || |||||||| Sbjct: 450 ttaccccatctga 462
>gb|AY087714.1| Arabidopsis thaliana clone 37861 mRNA, complete sequence Length = 1157 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 495 gagaaaggtgtatcaaaatagctatcgttcatgacattgctgaagctattgttggcgaca 554 ||||||||||||| ||||| || || || ||||| || ||||||||||||||||| || | Sbjct: 423 gagaaaggtgtataaaaatggcaattgtgcatgatatcgctgaagctattgttggagata 482 Query: 555 tcactccatctga 567 | || |||||||| Sbjct: 483 ttaccccatctga 495
>emb|AL604046.8| Mouse DNA sequence from clone RP23-206D6 on chromosome 11 Contains the genes for olfactory receptor MOR135-14 and -3 , two olfactory receptor MOR135 pseudogenes, the gene for a novel olfactory receptor family MOR135 member, a zinc finger protein pseudogene, the 5' end of the gene for a novel KRAB box domain containing protein and a CpG island, complete sequence Length = 194873 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 422 gagtctattgctgatcacatgta 444 ||||||||||||||||||||||| Sbjct: 73854 gagtctattgctgatcacatgta 73876
>gb|AC068902.20| Mus musculus clone rp23-151l10, complete sequence Length = 199514 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 422 gagtctattgctgatcacatgta 444 ||||||||||||||||||||||| Sbjct: 5931 gagtctattgctgatcacatgta 5953
>ref|XM_480467.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3096 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 319 cgcggcgtcgtccgccgcctcg 340 |||||||||||||||||||||| Sbjct: 2478 cgcggcgtcgtccgccgcctcg 2457
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 cgcggcgtcgtccgccgcctcg 340 |||||||||||||||||||||| Sbjct: 5269138 cgcggcgtcgtccgccgcctcg 5269159
>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1099H05 Length = 186036 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 cgcggcgtcgtccgccgcctcg 340 |||||||||||||||||||||| Sbjct: 137494 cgcggcgtcgtccgccgcctcg 137515
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 cgcggcgtcgtccgccgcctcg 340 |||||||||||||||||||||| Sbjct: 60726 cgcggcgtcgtccgccgcctcg 60747
>emb|Z54206.1|BVH1LFT31 Bovine herpesvirus type 1 31-kb DNA (left genome end) Length = 31444 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 cgtccgccgcctcggccatcg 347 ||||||||||||||||||||| Sbjct: 23489 cgtccgccgcctcggccatcg 23509
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 cgtccgccgcctcggccatcg 347 ||||||||||||||||||||| Sbjct: 23489 cgtccgccgcctcggccatcg 23509 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 tccgcggcgtcgtccgccgcctcg 340 ||||||||||||||| |||||||| Sbjct: 134471 tccgcggcgtcgtcccccgcctcg 134494 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 tccgcggcgtcgtccgccgcctcg 340 ||||||||||||||| |||||||| Sbjct: 103747 tccgcggcgtcgtcccccgcctcg 103724
>gb|AY028431.1| Burkholderia cepacia genomovar III putative type III secretion gene cluster, complete sequence Length = 34600 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 gccgctcgccgccgcgtatcc 185 ||||||||||||||||||||| Sbjct: 23301 gccgctcgccgccgcgtatcc 23281
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 gtcatccgcggcgtcgtccgc 333 ||||||||||||||||||||| Sbjct: 1144107 gtcatccgcggcgtcgtccgc 1144087
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 gtcgcgccgccctcgccggtg 313 ||||||||||||||||||||| Sbjct: 1852647 gtcgcgccgccctcgccggtg 1852667 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 tcctgcgccgctcgccgccgc 179 ||||||||||||||||||||| Sbjct: 1600551 tcctgcgccgctcgccgccgc 1600531
>emb|Z49078.1|BHV1ULX Bovine herpesvirus type 1 DNA for UL36, UL37, UL38, UL39, UL40 and UL41 Length = 9353 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 cgtccgccgcctcggccatcg 347 ||||||||||||||||||||| Sbjct: 1398 cgtccgccgcctcggccatcg 1418
>gb|M84470.1|HSBRIBORED Bovine Herpesvirus ribonucleotide reductase small subunit gene, complete cds Length = 1242 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 cgtccgccgcctcggccatcg 347 ||||||||||||||||||||| Sbjct: 226 cgtccgccgcctcggccatcg 206
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ccgcggcgtcgtccgccgcc 337 |||||||||||||||||||| Sbjct: 56922 ccgcggcgtcgtccgccgcc 56941
>ref|XM_630447.1| Dictyostelium discoideum hypothetical protein (DDB0189090), partial mRNA Length = 573 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 434 gatcacatgtatcgtatggcactgatgg 461 ||||| ||||||||||||||| |||||| Sbjct: 103 gatcatatgtatcgtatggcaatgatgg 130
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gggaaagcaaagccgccgcc 38 |||||||||||||||||||| Sbjct: 2670317 gggaaagcaaagccgccgcc 2670298
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 cgcggcgtcgtccgccgcctcggc 342 ||||||| |||||||||||||||| Sbjct: 2086454 cgcggcggcgtccgccgcctcggc 2086477
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cgcgcggcctcctgcgccgc 169 |||||||||||||||||||| Sbjct: 34248211 cgcgcggcctcctgcgccgc 34248230
>ref|XM_762245.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_243_12246_12644) partial mRNA Length = 399 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 tccgccgcctcggccatcga 348 |||||||||||||||||||| Sbjct: 83 tccgccgcctcggccatcga 102
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gccgccgcagcctctggacg 284 |||||||||||||||||||| Sbjct: 1242228 gccgccgcagcctctggacg 1242247
>emb|Z74072.1|SCYDL024C S.cerevisiae chromosome IV reading frame ORF YDL024c Length = 4554 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ccctcctgcgcgcggcctcc 161 |||||||||||||||||||| Sbjct: 4299 ccctcctgcgcgcggcctcc 4318
>emb|Z74071.1|SCYDL023C S.cerevisiae chromosome IV reading frame ORF YDL023c Length = 4095 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ccctcctgcgcgcggcctcc 161 |||||||||||||||||||| Sbjct: 1648 ccctcctgcgcgcggcctcc 1667
>emb|Z48432.1|SCCHRIV42 S. cerevisiae chromosome IV left arm (EU) DNA segment (41372 bp) Length = 41372 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ccctcctgcgcgcggcctcc 161 |||||||||||||||||||| Sbjct: 7339 ccctcctgcgcgcggcctcc 7358
>emb|Z24454.1|SCGPD1A S.cerevisiae glycerol 3-phosphate dehydrogenase gene, complete CDS Length = 1732 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ccctcctgcgcgcggcctcc 161 |||||||||||||||||||| Sbjct: 1 ccctcctgcgcgcggcctcc 20
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 cgcggcgtcgtccgccgcctcggc 342 ||||||| |||||||||||||||| Sbjct: 10525 cgcggcggcgtccgccgcctcggc 10548
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 tcctgcgccgctcgccgccg 178 |||||||||||||||||||| Sbjct: 223161 tcctgcgccgctcgccgccg 223180
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 cgcggcgtcgtccgccgcctcggc 342 ||||||| |||||||||||||||| Sbjct: 165433 cgcggcggcgtccgccgcctcggc 165456
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 cgccgccctcgccggtgtca 316 |||||||||||||||||||| Sbjct: 209398 cgccgccctcgccggtgtca 209417
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cgccgccctcgccggtgtca 316 |||||||||||||||||||| Sbjct: 78217 cgccgccctcgccggtgtca 78198
>gb|AC079331.11| Homo sapiens chromosome 17, clone RP11-360N9, complete sequence Length = 182535 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 ctttgatcgctgatgaccta 481 |||||||||||||||||||| Sbjct: 104137 ctttgatcgctgatgaccta 104156
>dbj|AK123864.1| Homo sapiens cDNA FLJ41870 fis, clone OCBBF2007428 Length = 2538 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 ctttgatcgctgatgaccta 481 |||||||||||||||||||| Sbjct: 2128 ctttgatcgctgatgaccta 2109
>gb|AC008116.8| Homo sapiens 3p25-26 BAC CTB-187P1 (California Institute of Technology BAC Library) complete sequence Length = 104947 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 aaaaggaaaggctggataaa 402 |||||||||||||||||||| Sbjct: 64281 aaaaggaaaggctggataaa 64300
>gb|M38740.1|YSCGPD1 Saccharomyces cerevisiae tRNA-Ala gene, complete sequence; and cytoplasmic NAD-linked glycerol-3-phosphate dehydrogenase (GPD1), partial cds Length = 1803 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ccctcctgcgcgcggcctcc 161 |||||||||||||||||||| Sbjct: 1161 ccctcctgcgcgcggcctcc 1180
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 317 tccgcggcgtcgtccgccgcctcggccatcga 348 |||||||||||| ||||| || |||||||||| Sbjct: 4092587 tccgcggcgtcggccgcctccgcggccatcga 4092556
>gb|AC010601.6| Homo sapiens chromosome 16 clone CTA-481E9, complete sequence Length = 110222 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 455 ctgatggctttgatcgctgatgac 478 ||||||||||||||| |||||||| Sbjct: 51515 ctgatggctttgatctctgatgac 51538
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tcctgcgccgctcgccgccg 178 |||||||||||||||||||| Sbjct: 4137006 tcctgcgccgctcgccgccg 4136987
>gb|AC010616.5|AC010616 Homo sapiens chromosome 19 clone CTD-2575K13, complete sequence Length = 171849 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ggcggccgccgcagcctctg 280 |||||||||||||||||||| Sbjct: 155532 ggcggccgccgcagcctctg 155513
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ctgcgccgctcgccgccgcg 180 |||||||||||||||||||| Sbjct: 1298067 ctgcgccgctcgccgccgcg 1298048
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 gcctcctgcgccgctcgccgccgc 179 |||||||||||||| ||||||||| Sbjct: 26457693 gcctcctgcgccgcccgccgccgc 26457716
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cgcgcggcctcctgcgccgc 169 |||||||||||||||||||| Sbjct: 34338683 cgcgcggcctcctgcgccgc 34338702
>gb|AC114582.12| Mus musculus chromosome 7, clone RP23-192M19, complete sequence Length = 201839 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 455 ctgatggctttgatcgctgatgac 478 ||||||||||||||| |||||||| Sbjct: 37641 ctgatggctttgatctctgatgac 37664
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 cgcgcggcctcctgcgccgc 169 |||||||||||||||||||| Sbjct: 86787 cgcgcggcctcctgcgccgc 86768
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 gcctcctgcgccgctcgccgccgc 179 |||||||||||||| ||||||||| Sbjct: 2964 gcctcctgcgccgcccgccgccgc 2987
>dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0598D02 Length = 155238 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ctgcgccgctcgccgccgcg 180 |||||||||||||||||||| Sbjct: 69071 ctgcgccgctcgccgccgcg 69052
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gccgccctcgccggtgtcat 317 |||||||||||||||||||| Sbjct: 95126 gccgccctcgccggtgtcat 95145
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 cgcccgtgcccaggcggccgccgc 272 |||||||||||||| ||||||||| Sbjct: 2397550 cgcccgtgcccaggaggccgccgc 2397527
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0563F09 Length = 174905 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ctgcgccgctcgccgccgcg 180 |||||||||||||||||||| Sbjct: 128941 ctgcgccgctcgccgccgcg 128922
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 gcgaccgcggccgcttctctcccg 115 ||||||||||||||| |||||||| Sbjct: 72647 gcgaccgcggccgctcctctcccg 72624
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gcgtcgtccgccgcctcggc 342 |||||||||||||||||||| Sbjct: 1560521 gcgtcgtccgccgcctcggc 1560540
>gb|U04621.1|SCU04621 Saccharomyces cerevisiae dihydroxyacetone phosphate reductase (DAR1) gene, complete cds Length = 1653 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ccctcctgcgcgcggcctcc 161 |||||||||||||||||||| Sbjct: 14 ccctcctgcgcgcggcctcc 33
>gb|M90658.1|HUMATP1A3S Human sodium/potassium ATPase alpha 3 subunit (ATP1A3) gene, 5' end Length = 2877 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ggcggccgccgcagcctctg 280 |||||||||||||||||||| Sbjct: 2700 ggcggccgccgcagcctctg 2719
>gb|AC022384.5| Homo sapiens chromosome 3 clone RP11-438J1 map 3p, complete sequence Length = 210053 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 aaaaggaaaggctggataaa 402 |||||||||||||||||||| Sbjct: 186162 aaaaggaaaggctggataaa 186181
>gb|AC090841.2| Homo sapiens chromosome 3 clone RP11-1082A18 map 3p, complete sequence Length = 217778 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 aaaaggaaaggctggataaa 402 |||||||||||||||||||| Sbjct: 24955 aaaaggaaaggctggataaa 24974
>gb|L14320.1|HSBBICP4A Bovine herpesvirus type 1 early-intermediate transcription control protein (BICP4) gene, complete cds Length = 8113 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 tccgcggcgtcgtccgccgcctcg 340 ||||||||||||||| |||||||| Sbjct: 7284 tccgcggcgtcgtcccccgcctcg 7307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,338,726 Number of Sequences: 3902068 Number of extensions: 4338726 Number of successful extensions: 90124 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87782 Number of HSP's gapped (non-prelim): 2342 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
