ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29b01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 238 bits (120), Expect = 2e-59 Identities = 228/264 (86%) Strand = Plus / Plus Query: 350 ccgcacggctggatcctcgccatcgaccccacagatctcgccgcgtccctcctccacccc 409 |||||||| |||| ||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 27280883 ccgcacgggtggacgctcgccatcgaccccaccgacctcgccgcgtcgctcctccacccc 27280942 Query: 410 ttcaccggctccgttcgccccctcccgccgctccccgccttcttcgcggagacggatgac 469 ||||||||| |||| || |||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 27280943 ttcaccggcgccgtctgcgccctcccgccgctcccggccttcttcgccgagacggacgac 27281002 Query: 470 ctggcctgggacctatccccgcacagcgtcatggcgtcctgcggcgaggtcgtcctggtc 529 |||||||||||| || |||||| |||||||||||||||||||||||| |||| || Sbjct: 27281003 ctggcctgggactggtcgccgcacggcgtcatggcgtcctgcggcgagggactcctcttc 27281062 Query: 530 tgcgccctagaccctctcgccgactcctgggccccagtccccgccatgcccgactgcaac 589 | |||| ||||| | ||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 27281063 tacgcctccgacccgcccgccgccgcctgggccccgatccccgccatggccgactgcaac 27281122 Query: 590 gtgagcagcatcaactacgccggc 613 | |||||||||||||||| ||||| Sbjct: 27281123 gcgagcagcatcaactactccggc 27281146 Score = 212 bits (107), Expect = 1e-51 Identities = 224/263 (85%) Strand = Plus / Minus Query: 350 ccgcacggctggatcctcgccatcgaccccacagatctcgccgcgtccctcctccacccc 409 |||||||| |||| ||||||||||||||||| || ||||||||||| |||||||||| | Sbjct: 29678329 ccgcacgggtggacgctcgccatcgaccccaccgacctcgccgcgtcgctcctccacctc 29678270 Query: 410 ttcaccggctccgttcgccccctcccgccgctccccgccttcttcgcggagacggatgac 469 |||||||| |||| ||| |||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 29678269 ttcaccggagccgtccgcgccctcccgccgctcccggccttcttcgccgagacggacgac 29678210 Query: 470 ctggcctgggacctatccccgcacagcgtcatggcgtcctgcggcgaggtcgtcctggtc 529 |||||||||||| || ||||| |||||||||||||||||||||||| |||| || Sbjct: 29678209 ctggcctgggactggtcgccgcatggcgtcatggcgtcctgcggcgagggactcctcttc 29678150 Query: 530 tgcgccctagaccctctcgccgactcctgggccccagtccccgccatgcccgactgcaac 589 | |||| ||||| | ||||| | |||||||||| || |||||||| ||||||||||| Sbjct: 29678149 tacgcctccgacccgcccgccgccgcctgggcccctatcgccgccatggccgactgcaac 29678090 Query: 590 gtgagcagcatcaactacgccgg 612 | |||||||||||||||| |||| Sbjct: 29678089 gcgagcagcatcaactactccgg 29678067 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 394 gtccctcctccaccccttcaccggctccgttcgccccctcccgccgctccccgccttctt 453 ||||||||||| ||||||||||||| || | | | | ||| |||||||| |||||||| Sbjct: 8931346 gtccctcctccgccccttcaccggcaccatccacgtcgtcctgccgctcctggccttctt 8931405 Query: 454 cgcggagacggatgacctggcctgggac 481 | | |||||||||||||||||||||||| Sbjct: 8931406 caccgagacggatgacctggcctgggac 8931433 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 204 cgcagcccccgtggctcgttctcccgtcctccccgtcgccgctcttcttcaacccctcgg 263 ||||||| |||||||| |||||||||||||||| || |||||||||| ||| || Sbjct: 27280740 cgcagccgccgtggctgcttctcccgtcctccccctccaggctcttcttctgcccgcggg 27280799 Query: 264 aggaccgcctctac 277 |||||||||||||| Sbjct: 27280800 aggaccgcctctac 27280813 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 |||||||| || |||||||||||||||||| Sbjct: 28504386 ctcgccgcttcgctcctccaccccttcacc 28504357 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 tctcccgtcctccccgtcgccgct 246 ||||||||||||| |||||||||| Sbjct: 30118577 tctcccgtcctcctcgtcgccgct 30118554
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 238 bits (120), Expect = 2e-59 Identities = 228/264 (86%) Strand = Plus / Plus Query: 350 ccgcacggctggatcctcgccatcgaccccacagatctcgccgcgtccctcctccacccc 409 |||||||| |||| ||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 131554 ccgcacgggtggacgctcgccatcgaccccaccgacctcgccgcgtcgctcctccacccc 131613 Query: 410 ttcaccggctccgttcgccccctcccgccgctccccgccttcttcgcggagacggatgac 469 ||||||||| |||| || |||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 131614 ttcaccggcgccgtctgcgccctcccgccgctcccggccttcttcgccgagacggacgac 131673 Query: 470 ctggcctgggacctatccccgcacagcgtcatggcgtcctgcggcgaggtcgtcctggtc 529 |||||||||||| || |||||| |||||||||||||||||||||||| |||| || Sbjct: 131674 ctggcctgggactggtcgccgcacggcgtcatggcgtcctgcggcgagggactcctcttc 131733 Query: 530 tgcgccctagaccctctcgccgactcctgggccccagtccccgccatgcccgactgcaac 589 | |||| ||||| | ||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 131734 tacgcctccgacccgcccgccgccgcctgggccccgatccccgccatggccgactgcaac 131793 Query: 590 gtgagcagcatcaactacgccggc 613 | |||||||||||||||| ||||| Sbjct: 131794 gcgagcagcatcaactactccggc 131817 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 204 cgcagcccccgtggctcgttctcccgtcctccccgtcgccgctcttcttcaacccctcgg 263 ||||||| |||||||| |||||||||||||||| || |||||||||| ||| || Sbjct: 131411 cgcagccgccgtggctgcttctcccgtcctccccctccaggctcttcttctgcccgcggg 131470 Query: 264 aggaccgcctctac 277 |||||||||||||| Sbjct: 131471 aggaccgcctctac 131484
>ref|XM_467460.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1281 Score = 212 bits (107), Expect = 1e-51 Identities = 224/263 (85%) Strand = Plus / Minus Query: 350 ccgcacggctggatcctcgccatcgaccccacagatctcgccgcgtccctcctccacccc 409 |||||||| |||| ||||||||||||||||| || ||||||||||| |||||||||| | Sbjct: 1203 ccgcacgggtggacgctcgccatcgaccccaccgacctcgccgcgtcgctcctccacctc 1144 Query: 410 ttcaccggctccgttcgccccctcccgccgctccccgccttcttcgcggagacggatgac 469 |||||||| |||| ||| |||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 1143 ttcaccggagccgtccgcgccctcccgccgctcccggccttcttcgccgagacggacgac 1084 Query: 470 ctggcctgggacctatccccgcacagcgtcatggcgtcctgcggcgaggtcgtcctggtc 529 |||||||||||| || ||||| |||||||||||||||||||||||| |||| || Sbjct: 1083 ctggcctgggactggtcgccgcatggcgtcatggcgtcctgcggcgagggactcctcttc 1024 Query: 530 tgcgccctagaccctctcgccgactcctgggccccagtccccgccatgcccgactgcaac 589 | |||| ||||| | ||||| | |||||||||| || |||||||| ||||||||||| Sbjct: 1023 tacgcctccgacccgcccgccgccgcctgggcccctatcgccgccatggccgactgcaac 964 Query: 590 gtgagcagcatcaactacgccgg 612 | |||||||||||||||| |||| Sbjct: 963 gcgagcagcatcaactactccgg 941
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1191_G08 Length = 172832 Score = 212 bits (107), Expect = 1e-51 Identities = 224/263 (85%) Strand = Plus / Minus Query: 350 ccgcacggctggatcctcgccatcgaccccacagatctcgccgcgtccctcctccacccc 409 |||||||| |||| ||||||||||||||||| || ||||||||||| |||||||||| | Sbjct: 47308 ccgcacgggtggacgctcgccatcgaccccaccgacctcgccgcgtcgctcctccacctc 47249 Query: 410 ttcaccggctccgttcgccccctcccgccgctccccgccttcttcgcggagacggatgac 469 |||||||| |||| ||| |||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 47248 ttcaccggagccgtccgcgccctcccgccgctcccggccttcttcgccgagacggacgac 47189 Query: 470 ctggcctgggacctatccccgcacagcgtcatggcgtcctgcggcgaggtcgtcctggtc 529 |||||||||||| || ||||| |||||||||||||||||||||||| |||| || Sbjct: 47188 ctggcctgggactggtcgccgcatggcgtcatggcgtcctgcggcgagggactcctcttc 47129 Query: 530 tgcgccctagaccctctcgccgactcctgggccccagtccccgccatgcccgactgcaac 589 | |||| ||||| | ||||| | |||||||||| || |||||||| ||||||||||| Sbjct: 47128 tacgcctccgacccgcccgccgccgcctgggcccctatcgccgccatggccgactgcaac 47069 Query: 590 gtgagcagcatcaactacgccgg 612 | |||||||||||||||| |||| Sbjct: 47068 gcgagcagcatcaactactccgg 47046
>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0613F08 Length = 142937 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 394 gtccctcctccaccccttcaccggctccgttcgccccctcccgccgctccccgccttctt 453 ||||||||||| ||||||||||||| || | | | | ||| |||||||| |||||||| Sbjct: 136364 gtccctcctccgccccttcaccggcaccatccacgtcgtcctgccgctcctggccttctt 136423 Query: 454 cgcggagacggatgacctggcctgggac 481 | | |||||||||||||||||||||||| Sbjct: 136424 caccgagacggatgacctggcctgggac 136451
>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0060K08 Length = 159626 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 394 gtccctcctccaccccttcaccggctccgttcgccccctcccgccgctccccgccttctt 453 ||||||||||| ||||||||||||| || | | | | ||| |||||||| |||||||| Sbjct: 3955 gtccctcctccgccccttcaccggcaccatccacgtcgtcctgccgctcctggccttctt 4014 Query: 454 cgcggagacggatgacctggcctgggac 481 | | |||||||||||||||||||||||| Sbjct: 4015 caccgagacggatgacctggcctgggac 4042
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 9e-09 Identities = 78/91 (85%), Gaps = 1/91 (1%) Strand = Plus / Plus Query: 367 cgccatcgaccccacagatctcgccgcgtccctcctccaccccttcaccggctccgttcg 426 ||||||| ||||||| || |||| |||| |||||||||| |||||||||| ||||||| Sbjct: 34362721 cgccatcaaccccaccgacctcgtcgcg-ccctcctccatcccttcaccgatgccgttcg 34362779 Query: 427 ccccctcccgccgctccccgccttcttcgcg 457 | ||||||| ||||| || |||||||||||| Sbjct: 34362780 cgccctcccaccgctaccggccttcttcgcg 34362810 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 41221701 cctcctccaccccttcaccggc 41221680
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 69.9 bits (35), Expect = 9e-09 Identities = 78/91 (85%), Gaps = 1/91 (1%) Strand = Plus / Plus Query: 367 cgccatcgaccccacagatctcgccgcgtccctcctccaccccttcaccggctccgttcg 426 ||||||| ||||||| || |||| |||| |||||||||| |||||||||| ||||||| Sbjct: 45065 cgccatcaaccccaccgacctcgtcgcg-ccctcctccatcccttcaccgatgccgttcg 45123 Query: 427 ccccctcccgccgctccccgccttcttcgcg 457 | ||||||| ||||| || |||||||||||| Sbjct: 45124 cgccctcccaccgctaccggccttcttcgcg 45154
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 350 ccgcacggctggatcctcgccatcgaccccacagatctcgccgcgtccctcctccacccc 409 |||||||| |||| ||||||||||||||||| || ||||||| ||| ||||| ||| || Sbjct: 16975092 ccgcacgggtggacgctcgccatcgaccccactgacctcgccgtgtcgctccttcactcc 16975151 Query: 410 ttcacc 415 |||||| Sbjct: 16975152 ttcacc 16975157 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cagcggccgcgcctccatcg 205 |||||||||||||||||||| Sbjct: 1143320 cagcggccgcgcctccatcg 1143301 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cagcggccgcgcctccatcg 205 |||||||||||||||||||| Sbjct: 1128494 cagcggccgcgcctccatcg 1128475
>dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1423D04 Length = 154474 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 350 ccgcacggctggatcctcgccatcgaccccacagatctcgccgcgtccctcctccacccc 409 |||||||| |||| ||||||||||||||||| || ||||||| ||| ||||| ||| || Sbjct: 108114 ccgcacgggtggacgctcgccatcgaccccactgacctcgccgtgtcgctccttcactcc 108173 Query: 410 ttcacc 415 |||||| Sbjct: 108174 ttcacc 108179
>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034K24, complete sequence Length = 142852 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 ||||||||||| |||||||||||||||||| Sbjct: 38004 ctcgccgcgtcgctcctccaccccttcacc 37975
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 ||||||||||| |||||||||||||||||| Sbjct: 23348971 ctcgccgcgtcgctcctccaccccttcacc 23349000 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 6892616 cctcctccaccccttcaccggc 6892595
>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence Length = 77605 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 ||||||||||| |||||||||||||||||| Sbjct: 30406 ctcgccgcgtcgctcctccaccccttcacc 30377
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 ||||||||||| |||||||||||||||||| Sbjct: 23658881 ctcgccgcgtcgctcctccaccccttcacc 23658910 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 19837969 cctcctccaccccttcaccggc 19837990 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 6959083 cctcctccaccccttcaccggc 6959062
>emb|AL354855.26| Human DNA sequence from clone RP11-643E14 on chromosome 9 Contains a novel gene (MGC12921), the 5' end of a novel gene (KIAA0515) and three CpG islands, complete sequence Length = 112849 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 426 gccccctcccgccgctccccgcc 448 ||||||||||||||||||||||| Sbjct: 108995 gccccctcccgccgctccccgcc 109017
>ref|XM_467257.1| Oryza sativa (japonica cultivar-group), mRNA Length = 567 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 |||||||| || |||||||||||||||||| Sbjct: 54 ctcgccgcttcgctcctccaccccttcacc 25
>ref|NM_190090.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1629 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 465 cctcctccaccccttcaccggc 486
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 17874 cctcctccaccccttcaccggc 17853
>gb|AC128706.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0063F24, complete sequence Length = 152738 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 60430 cctcctccaccccttcaccggc 60451
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 719209 cctcctccaccccttcaccggc 719230
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 |||||||| || |||||||||||||||||| Sbjct: 397004 ctcgccgcctcgctcctccaccccttcacc 397033
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 719207 cctcctccaccccttcaccggc 719228
>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1150F11 Length = 130355 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 38616 cctcctccaccccttcaccggc 38595
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504E02 Length = 137468 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 118756 cctcctccaccccttcaccggc 118735
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 14754 cctcctccaccccttcaccggc 14775
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 105090 cctcctccaccccttcaccggc 105111
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 |||||||| || |||||||||||||||||| Sbjct: 128507 ctcgccgcttcgctcctccaccccttcacc 128478
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 |||||||| || |||||||||||||||||| Sbjct: 73227 ctcgccgcttcgctcctccaccccttcacc 73198
>dbj|AK110814.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F08, full insert sequence Length = 1583 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 121 cctcctccaccccttcaccggc 142
>dbj|AK109767.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H12, full insert sequence Length = 1686 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 453 cctcctccaccccttcaccggc 474
>dbj|AK108047.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F05, full insert sequence Length = 1456 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 399 cctcctccaccccttcaccggc 420
>dbj|AK106162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-B03, full insert sequence Length = 1815 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 574 cctcctccaccccttcaccggc 595
>dbj|AK101587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051A04, full insert sequence Length = 1935 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 573 cctcctccaccccttcaccggc 594
>dbj|AK072644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023129J01, full insert sequence Length = 1225 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 cctcctccaccccttcaccggc 418 |||||||||||||||||||||| Sbjct: 575 cctcctccaccccttcaccggc 596
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 |||||||| || |||||||||||||||||| Sbjct: 81663 ctcgccgcctcgctcctccaccccttcacc 81692
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 386 ctcgccgcgtccctcctccaccccttcacc 415 |||||||| || |||||||||||||||||| Sbjct: 35756 ctcgccgcctcgctcctccaccccttcacc 35785
>emb|AJ719804.1| Gallus gallus mRNA for hypothetical protein, clone 6k21 Length = 2548 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 cccctcccgccgctccccgcc 448 ||||||||||||||||||||| Sbjct: 187 cccctcccgccgctccccgcc 167
>ref|NM_001006293.1| Gallus gallus DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 (DDX27), mRNA Length = 2548 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 cccctcccgccgctccccgcc 448 ||||||||||||||||||||| Sbjct: 187 cccctcccgccgctccccgcc 167
>emb|CR406491.1| Gallus gallus finished cDNA, clone ChEST126k9 Length = 2588 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 cccctcccgccgctccccgcc 448 ||||||||||||||||||||| Sbjct: 28 cccctcccgccgctccccgcc 8
>gb|DQ200084.1| Eurhynchiastrum pulchellum from Finland internal transcribed spacer 1, partial sequence Length = 330 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 cgccgcgtccctcctccacc 407 |||||||||||||||||||| Sbjct: 241 cgccgcgtccctcctccacc 222
>ref|XM_467551.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1009 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tctcccgtcctccccgtcgccgct 246 ||||||||||||| |||||||||| Sbjct: 97 tctcccgtcctcctcgtcgccgct 120
>gb|AY299014.1| Stenotrophomonas maltophilia plasmid pBI1063, partial sequence Length = 23483 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cggacatcgcccgcttccgc 148 |||||||||||||||||||| Sbjct: 11871 cggacatcgcccgcttccgc 11852
>emb|AL646097.25| Mouse DNA sequence from clone RP23-338M9 on chromosome 11 Contains the 3' end of the Gas7 gene for growth arrest specific 7, the Rcvrn gene for recoverin, the Glp2r gene for glucagon-like peptide 2 receptor, a novel gene and the gene for a novel protein (1110001P11Rik), complete sequence Length = 212636 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccctcctccaccccttcacc 415 |||||||||||||||||||| Sbjct: 16733 ccctcctccaccccttcacc 16714
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 tctcccgtcctccccgtcgccgct 246 ||||||||||||| |||||||||| Sbjct: 98174 tctcccgtcctcctcgtcgccgct 98151
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 gcggcgaggtcgtcctggtc 529 |||||||||||||||||||| Sbjct: 7711251 gcggcgaggtcgtcctggtc 7711270
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cagcggccgcgcctccatcg 205 |||||||||||||||||||| Sbjct: 119543 cagcggccgcgcctccatcg 119524 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cagcggccgcgcctccatcg 205 |||||||||||||||||||| Sbjct: 104717 cagcggccgcgcctccatcg 104698
>dbj|AK107565.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C07, full insert sequence Length = 1009 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tctcccgtcctccccgtcgccgct 246 ||||||||||||| |||||||||| Sbjct: 97 tctcccgtcctcctcgtcgccgct 120
>gb|AF135442.1|AF135442 Mus musculus growth arrest-specific 7 protein (Gas7) gene, exon 6 and partial cds Length = 998 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ccctcctccaccccttcacc 415 |||||||||||||||||||| Sbjct: 900 ccctcctccaccccttcacc 881
>dbj|AK064715.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-D11, full insert sequence Length = 967 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cagcggccgcgcctccatcg 205 |||||||||||||||||||| Sbjct: 316 cagcggccgcgcctccatcg 335
>gb|AY613856.1| Oikopleura dioica clone BACOIKO008 5xo15, complete sequence Length = 174913 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgcctctactgcaacatcca 288 |||||||||||||||||||| Sbjct: 93521 cgcctctactgcaacatcca 93540
>dbj|AP001867.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2176F18, complete sequence Length = 49162 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 8 tccacacaacctagaaacgcccaatttc 35 |||| ||||||||||||| ||||||||| Sbjct: 42909 tccatacaacctagaaactcccaatttc 42936 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,986,802 Number of Sequences: 3902068 Number of extensions: 2986802 Number of successful extensions: 59568 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58797 Number of HSP's gapped (non-prelim): 766 length of query: 613 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 590 effective length of database: 17,143,297,704 effective search space: 10114545645360 effective search space used: 10114545645360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
