ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29a12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 248 bits (125), Expect = 1e-62 Identities = 228/261 (87%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 206 aggtgcggcgagcacgacgggacggtgccgccggaggtggcgcggcaccacgagcacgcg 265 |||||||| | |||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 10391584 aggtgcggggcgcacgacggggaggtgcctatggaggtggcgcggcaccacgagcacgcg 10391525 Query: 266 gcgccggggggccggtgctgctgctcggcggtggtgcagcgcgtggcggcgccggcggcg 325 | ||| ||| || | |||||||| |||||||| |||| ||| ||||||||||||||| Sbjct: 10391524 gagccagggtcggggcggtgctgctccgcggtggtccagcacgtagcggcgccggcggcg 10391465 Query: 326 gacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtacaagagcttcgtgcgc 385 | |||||| | ||||| ||||| ||||||||||| |||||||||||| | ||||| ||| Sbjct: 10391464 gcggtgtggtcggtggtgcggcggttcgaccagccccaggcgtacaagcggttcgtccgc 10391405 Query: 386 agctgcgcgctgctggacggggacggcggcgtgggcacgctccgcgagggtgcgcgtggt 445 |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| || Sbjct: 10391404 agctgcgcgctgctcgccggggacggcggcgtgggcacgctccgcga-ggtgcgcgtcgt 10391346 Query: 446 gtcgggcctccccgcggcgtc 466 ||||||||||||||||||||| Sbjct: 10391345 gtcgggcctccccgcggcgtc 10391325 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgtggcggcgccggcggcgg 326 |||||||||||||||||||| Sbjct: 3880676 cgtggcggcgccggcggcgg 3880657
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 248 bits (125), Expect = 1e-62 Identities = 228/261 (87%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 206 aggtgcggcgagcacgacgggacggtgccgccggaggtggcgcggcaccacgagcacgcg 265 |||||||| | |||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 48137 aggtgcggggcgcacgacggggaggtgcctatggaggtggcgcggcaccacgagcacgcg 48078 Query: 266 gcgccggggggccggtgctgctgctcggcggtggtgcagcgcgtggcggcgccggcggcg 325 | ||| ||| || | |||||||| |||||||| |||| ||| ||||||||||||||| Sbjct: 48077 gagccagggtcggggcggtgctgctccgcggtggtccagcacgtagcggcgccggcggcg 48018 Query: 326 gacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtacaagagcttcgtgcgc 385 | |||||| | ||||| ||||| ||||||||||| |||||||||||| | ||||| ||| Sbjct: 48017 gcggtgtggtcggtggtgcggcggttcgaccagccccaggcgtacaagcggttcgtccgc 47958 Query: 386 agctgcgcgctgctggacggggacggcggcgtgggcacgctccgcgagggtgcgcgtggt 445 |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| || Sbjct: 47957 agctgcgcgctgctcgccggggacggcggcgtgggcacgctccgcga-ggtgcgcgtcgt 47899 Query: 446 gtcgggcctccccgcggcgtc 466 ||||||||||||||||||||| Sbjct: 47898 gtcgggcctccccgcggcgtc 47878
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 248 bits (125), Expect = 1e-62 Identities = 228/261 (87%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 206 aggtgcggcgagcacgacgggacggtgccgccggaggtggcgcggcaccacgagcacgcg 265 |||||||| | |||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 105050 aggtgcggggcgcacgacggggaggtgcctatggaggtggcgcggcaccacgagcacgcg 104991 Query: 266 gcgccggggggccggtgctgctgctcggcggtggtgcagcgcgtggcggcgccggcggcg 325 | ||| ||| || | |||||||| |||||||| |||| ||| ||||||||||||||| Sbjct: 104990 gagccagggtcggggcggtgctgctccgcggtggtccagcacgtagcggcgccggcggcg 104931 Query: 326 gacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtacaagagcttcgtgcgc 385 | |||||| | ||||| ||||| ||||||||||| |||||||||||| | ||||| ||| Sbjct: 104930 gcggtgtggtcggtggtgcggcggttcgaccagccccaggcgtacaagcggttcgtccgc 104871 Query: 386 agctgcgcgctgctggacggggacggcggcgtgggcacgctccgcgagggtgcgcgtggt 445 |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| || Sbjct: 104870 agctgcgcgctgctcgccggggacggcggcgtgggcacgctccgcga-ggtgcgcgtcgt 104812 Query: 446 gtcgggcctccccgcggcgtc 466 ||||||||||||||||||||| Sbjct: 104811 gtcgggcctccccgcggcgtc 104791
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 248 bits (125), Expect = 1e-62 Identities = 228/261 (87%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 206 aggtgcggcgagcacgacgggacggtgccgccggaggtggcgcggcaccacgagcacgcg 265 |||||||| | |||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 10389685 aggtgcggggcgcacgacggggaggtgcctatggaggtggcgcggcaccacgagcacgcg 10389626 Query: 266 gcgccggggggccggtgctgctgctcggcggtggtgcagcgcgtggcggcgccggcggcg 325 | ||| ||| || | |||||||| |||||||| |||| ||| ||||||||||||||| Sbjct: 10389625 gagccagggtcggggcggtgctgctccgcggtggtccagcacgtagcggcgccggcggcg 10389566 Query: 326 gacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtacaagagcttcgtgcgc 385 | |||||| | ||||| ||||| ||||||||||| |||||||||||| | ||||| ||| Sbjct: 10389565 gcggtgtggtcggtggtgcggcggttcgaccagccccaggcgtacaagcggttcgtccgc 10389506 Query: 386 agctgcgcgctgctggacggggacggcggcgtgggcacgctccgcgagggtgcgcgtggt 445 |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| || Sbjct: 10389505 agctgcgcgctgctcgccggggacggcggcgtgggcacgctccgcga-ggtgcgcgtcgt 10389447 Query: 446 gtcgggcctccccgcggcgtc 466 ||||||||||||||||||||| Sbjct: 10389446 gtcgggcctccccgcggcgtc 10389426 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgtggcggcgccggcggcgg 326 |||||||||||||||||||| Sbjct: 3880787 cgtggcggcgccggcggcgg 3880768
>dbj|AK108414.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H05, full insert sequence Length = 1173 Score = 248 bits (125), Expect = 1e-62 Identities = 228/261 (87%), Gaps = 1/261 (0%) Strand = Plus / Plus Query: 206 aggtgcggcgagcacgacgggacggtgccgccggaggtggcgcggcaccacgagcacgcg 265 |||||||| | |||||||||| |||||| |||||||||||||||||||||||||||| Sbjct: 235 aggtgcggggcgcacgacggggaggtgcctatggaggtggcgcggcaccacgagcacgcg 294 Query: 266 gcgccggggggccggtgctgctgctcggcggtggtgcagcgcgtggcggcgccggcggcg 325 | ||| ||| || | |||||||| |||||||| |||| ||| ||||||||||||||| Sbjct: 295 gagccagggtcggggcggtgctgctccgcggtggtccagcacgtagcggcgccggcggcg 354 Query: 326 gacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtacaagagcttcgtgcgc 385 | |||||| | ||||| ||||| ||||||||||| |||||||||||| | ||||| ||| Sbjct: 355 gcggtgtggtcggtggtgcggcggttcgaccagccccaggcgtacaagcggttcgtccgc 414 Query: 386 agctgcgcgctgctggacggggacggcggcgtgggcacgctccgcgagggtgcgcgtggt 445 |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| || Sbjct: 415 agctgcgcgctgctcgccggggacggcggcgtgggcacgctccgcga-ggtgcgcgtcgt 473 Query: 446 gtcgggcctccccgcggcgtc 466 ||||||||||||||||||||| Sbjct: 474 gtcgggcctccccgcggcgtc 494
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 85.7 bits (43), Expect = 1e-13 Identities = 125/148 (84%), Gaps = 7/148 (4%) Strand = Plus / Minus Query: 228 cggtgccgccggaggtggcgcggcaccacgagcacgcggc-gccggggggccggtgctgc 286 |||||||| ||||||||||| ||||||||||||||||||| | || ||||| | ||| Sbjct: 27126 cggtgccggcggaggtggcgaggcaccacgagcacgcggcgggcgtggggcag----tgc 27071 Query: 287 tgctcggcggtggtgcagcgcg-tggcggcgccggcggcggacgtgtgggccgtggtccg 345 |||||||||||||||||| ||| | |||||||||| || | |||||| | ||||| || Sbjct: 27070 tgctcggcggtggtgcag-gcgatagcggcgccggtggacgcggtgtggtcggtggtgcg 27012 Query: 346 gcgcttcgaccagccgcaggcgtacaag 373 ||| ||||||| |||||||||||||||| Sbjct: 27011 gcggttcgaccggccgcaggcgtacaag 26984 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 434 ggtgcgcgtggtgtcgggcctccccgc 460 |||||| |||||||||||||||||||| Sbjct: 26909 ggtgcgggtggtgtcgggcctccccgc 26883
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 125/148 (84%), Gaps = 7/148 (4%) Strand = Plus / Minus Query: 228 cggtgccgccggaggtggcgcggcaccacgagcacgcggc-gccggggggccggtgctgc 286 |||||||| ||||||||||| ||||||||||||||||||| | || ||||| | ||| Sbjct: 23095351 cggtgccggcggaggtggcgaggcaccacgagcacgcggcgggcgtggggcag----tgc 23095296 Query: 287 tgctcggcggtggtgcagcgcg-tggcggcgccggcggcggacgtgtgggccgtggtccg 345 |||||||||||||||||| ||| | |||||||||| || | |||||| | ||||| || Sbjct: 23095295 tgctcggcggtggtgcag-gcgatagcggcgccggtggacgcggtgtggtcggtggtgcg 23095237 Query: 346 gcgcttcgaccagccgcaggcgtacaag 373 ||| ||||||| |||||||||||||||| Sbjct: 23095236 gcggttcgaccggccgcaggcgtacaag 23095209 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 434 ggtgcgcgtggtgtcgggcctccccgc 460 |||||| |||||||||||||||||||| Sbjct: 23095134 ggtgcgggtggtgtcgggcctccccgc 23095108 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 17362723 gcgccgcaccgcaccgcacc 17362704
>ref|NM_190420.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 627 Score = 48.1 bits (24), Expect = 0.026 Identities = 54/64 (84%) Strand = Plus / Plus Query: 311 gcggcgccggcggcggacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtac 370 ||||||||||||| | |||||| | ||||| ||| | ||||||| ||||||||||||| Sbjct: 169 gcggcgccggcggacgcggtgtggtcggtggtgcggaggttcgaccggccgcaggcgtac 228 Query: 371 aaga 374 |||| Sbjct: 229 aaga 232 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 239 gaggtggcgcggcaccacgagcacgcgg 266 |||||||||||| ||||||||||||||| Sbjct: 100 gaggtggcgcggtaccacgagcacgcgg 127
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.026 Identities = 54/64 (84%) Strand = Plus / Plus Query: 311 gcggcgccggcggcggacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtac 370 ||||||||||||| | |||||| | ||||| ||| | ||||||| ||||||||||||| Sbjct: 35414460 gcggcgccggcggacgcggtgtggtcggtggtgcggaggttcgaccggccgcaggcgtac 35414519 Query: 371 aaga 374 |||| Sbjct: 35414520 aaga 35414523 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 239 gaggtggcgcggcaccacgagcacgcgg 266 |||||||||||| ||||||||||||||| Sbjct: 35414391 gaggtggcgcggtaccacgagcacgcgg 35414418 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 304 gcgcgtggcggcgccggcggcggacg 329 ||||||||||||| |||||||||||| Sbjct: 6543371 gcgcgtggcggcggcggcggcggacg 6543346 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 309 tggcggcgccggcggcggacgt 330 |||||||||||||||||||||| Sbjct: 1336396 tggcggcgccggcggcggacgt 1336375 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 gcagcgcgtggcggcgccggcggcg 325 |||||||||||||||| |||||||| Sbjct: 19870899 gcagcgcgtggcggcgacggcggcg 19870875 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggcggcgccggcggcggacg 329 |||||||||||||||||||| Sbjct: 22705672 ggcggcgccggcggcggacg 22705691
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 48.1 bits (24), Expect = 0.026 Identities = 54/64 (84%) Strand = Plus / Plus Query: 311 gcggcgccggcggcggacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtac 370 ||||||||||||| | |||||| | ||||| ||| | ||||||| ||||||||||||| Sbjct: 38409 gcggcgccggcggacgcggtgtggtcggtggtgcggaggttcgaccggccgcaggcgtac 38468 Query: 371 aaga 374 |||| Sbjct: 38469 aaga 38472 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 239 gaggtggcgcggcaccacgagcacgcgg 266 |||||||||||| ||||||||||||||| Sbjct: 38340 gaggtggcgcggtaccacgagcacgcgg 38367
>ref|XM_476615.1| Oryza sativa (japonica cultivar-group), mRNA Length = 255 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 gcagcgcgtggcggcgccggcgg 323 ||||||||||||||||||||||| Sbjct: 65 gcagcgcgtggcggcgccggcgg 43
>gb|BT017193.1| Zea mays clone EL01N0371C09.c mRNA sequence Length = 1176 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 339 tggtccggcgcttcgaccagccgcaggcgtacaag 373 |||||||| ||||||||||||||||| ||||||| Sbjct: 333 tggtccggagcttcgaccagccgcagcggtacaag 367
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 301 gcagcgcgtggcggcgccggcgg 323 ||||||||||||||||||||||| Sbjct: 2456930 gcagcgcgtggcggcgccggcgg 2456952
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 301 gcagcgcgtggcggcgccggcgg 323 ||||||||||||||||||||||| Sbjct: 21910 gcagcgcgtggcggcgccggcgg 21932
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 ggtgctgctgctcggcggtggtg 301 ||||||||||||||||||||||| Sbjct: 635008 ggtgctgctgctcggcggtggtg 635030
>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1470_H06 Length = 62794 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 301 gcagcgcgtggcggcgccggcgg 323 ||||||||||||||||||||||| Sbjct: 30677 gcagcgcgtggcggcgccggcgg 30699
>gb|AY109227.1| Zea mays PCO115719 mRNA sequence Length = 901 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 339 tggtccggcgcttcgaccagccgcaggcgtacaag 373 |||||||| ||||||||||||||||| ||||||| Sbjct: 338 tggtccggagcttcgaccagccgcagcggtacaag 372
>gb|AY107082.1| Zea mays PCO120907 mRNA sequence Length = 1162 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Plus Query: 314 gcgccggcggcggacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtacaag 373 |||||| ||| || ||| |||||||| ||||| ||||||||| ||||||| ||||||| Sbjct: 310 gcgccgccggaggccgtctgggccgtcgtccgccgcttcgactgcccgcaggtgtacaag 369 Query: 374 agcttcgtgcgcagctgcgcgct 396 |||| | || ||||||||||| Sbjct: 370 cacttcatccggagctgcgcgct 392
>ref|NM_188489.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1887 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gcgcgtggcggcgccggcggcggacg 329 ||||||||||||| |||||||||||| Sbjct: 55 gcgcgtggcggcggcggcggcggacg 80
>ref|NM_184169.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1161 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 309 tggcggcgccggcggcggacgt 330 |||||||||||||||||||||| Sbjct: 1150 tggcggcgccggcggcggacgt 1129
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 304 gcgcgtggcggcgccggcggcggacg 329 ||||||||||||||||||||| |||| Sbjct: 48440 gcgcgtggcggcgccggcggccgacg 48415
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 391 cgcgctgctggacggggacggc 412 |||||||||||||||||||||| Sbjct: 1859786 cgcgctgctggacggggacggc 1859807
>gb|AC091250.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-315E2, complete sequence Length = 201395 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 279 ggtgctgctgctcggcggtggtgcag 304 ||||||||||||| |||||||||||| Sbjct: 21189 ggtgctgctgctctgcggtggtgcag 21164
>emb|AJ277468.1|OSA277468 Oryza sativa rbbi3-1 gene for putative Bowman Birk trypsin inhibitor Length = 17385 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 309 tggcggcgccggcggcggacgt 330 |||||||||||||||||||||| Sbjct: 14782 tggcggcgccggcggcggacgt 14803
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 292 ggcggtggtgcagcgcgtggcggcgc 317 |||| ||||||||||||||||||||| Sbjct: 3086543 ggcgatggtgcagcgcgtggcggcgc 3086568
>gb|AF139987.1|AF139987 Mus musculus LIM-kinase1 (Limk1) gene, complete cds; Wbscr1 (Wbscr1) gene, alternative splice products, complete cds; Wbscr5 (Wbscr5) gene, alternative splice products, complete cds; and replication factor C, 40kDa subunit (Rfc2) gene, complete cds Length = 114898 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 279 ggtgctgctgctcggcggtggtgcag 304 ||||||||||||| |||||||||||| Sbjct: 14613 ggtgctgctgctctgcggtggtgcag 14638
>gb|AF289665.1|AF289665 Mus musculus EIF4H gene, partial cds; LIMK1 gene, complete cds; and ELN gene, partial cds Length = 107257 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 279 ggtgctgctgctcggcggtggtgcag 304 ||||||||||||| |||||||||||| Sbjct: 45285 ggtgctgctgctctgcggtggtgcag 45260
>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489G09 Length = 148707 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 304 gcgcgtggcggcgccggcggcggacg 329 ||||||||||||| |||||||||||| Sbjct: 110851 gcgcgtggcggcggcggcggcggacg 110826
>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483F08 Length = 148985 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 304 gcgcgtggcggcgccggcggcggacg 329 ||||||||||||| |||||||||||| Sbjct: 23542 gcgcgtggcggcggcggcggcggacg 23517
>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0037C04 Length = 137879 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 309 tggcggcgccggcggcggacgt 330 |||||||||||||||||||||| Sbjct: 34447 tggcggcgccggcggcggacgt 34426
>dbj|AP003046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445D12 Length = 140952 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 309 tggcggcgccggcggcggacgt 330 |||||||||||||||||||||| Sbjct: 130050 tggcggcgccggcggcggacgt 130029
>dbj|AK111165.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-B06, full insert sequence Length = 3209 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gcgcgtggcggcgccggcggcggacg 329 ||||||||||||| |||||||||||| Sbjct: 1235 gcgcgtggcggcggcggcggcggacg 1260
>gb|AC166938.5| Mus musculus BAC clone RP23-85H24 from chromosome 5, complete sequence Length = 231866 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 279 ggtgctgctgctcggcggtggtgcag 304 ||||||||||||| |||||||||||| Sbjct: 32085 ggtgctgctgctctgcggtggtgcag 32110
>gb|AY825541.1| Taenia saginata 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 718 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 cagcgccgcaccgcaccgcac 50 ||||||||||||||||||||| Sbjct: 567 cagcgccgcaccgcaccgcac 547
>gb|AY825540.1| Taenia saginata 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 716 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 cagcgccgcaccgcaccgcac 50 ||||||||||||||||||||| Sbjct: 567 cagcgccgcaccgcaccgcac 547
>gb|AC156548.13| Mus musculus chromosome 5, clone RP23-412C8, complete sequence Length = 197890 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 59719 ccaaaccagaccagaccaaac 59739
>gb|BT017850.1| Zea mays clone EL01N0510G07.c mRNA sequence Length = 1007 Score = 42.1 bits (21), Expect = 1.6 Identities = 66/81 (81%) Strand = Plus / Plus Query: 314 gcgccggcggcggacgtgtgggccgtggtccggcgcttcgaccagccgcaggcgtacaag 373 |||||| |||| | ||| |||||| | ||||| ||||||||| ||||||| ||||||| Sbjct: 228 gcgccgccggccgccgtctgggccatcgtccgccgcttcgactgcccgcaggtgtacaag 287 Query: 374 agcttcgtgcgcagctgcgcg 394 |||| | |||||||||||| Sbjct: 288 cacttcatccgcagctgcgcg 308
>ref|XM_368327.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00917.4) partial mRNA Length = 948 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 gcgtggcggcgccggcggcgg 326 ||||||||||||||||||||| Sbjct: 358 gcgtggcggcgccggcggcgg 338
>gb|AC162458.4| Mus musculus chromosome 19, clone RP24-140G9, complete sequence Length = 212469 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 26645 ccaaaccagaccagaccaaac 26625
>gb|AC129079.5| Mus musculus BAC clone RP24-126J17 from chromosome 7, complete sequence Length = 180663 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 141601 ccaaaccagaccagaccaaac 141581
>gb|AC102779.6| Mus musculus chromosome 19, clone RP23-460A15, complete sequence Length = 214504 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 45785 ccaaaccagaccagaccaaac 45765
>gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence Length = 231286 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 12695 ccaaaccagaccagaccaaac 12675
>gb|AC008737.11| Homo sapiens chromosome 19 clone CTD-2538G9, complete sequence Length = 248281 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 191145 ccaaaccagaccagaccaaac 191125 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 191111 ccaaaccagaccagaccaaac 191091 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaa 24 |||||||||||||||||||| Sbjct: 190326 ccaaaccagaccagaccaaa 190307
>gb|AE012422.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 330 of 460 of the complete genome Length = 10431 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 gcggcggcgctgcagcagcac 142 ||||||||||||||||||||| Sbjct: 6004 gcggcggcgctgcagcagcac 5984
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 gcggcggcgctgcagcagcac 142 ||||||||||||||||||||| Sbjct: 1305213 gcggcggcgctgcagcagcac 1305233
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 gcgccgcaccgcaccgcaccc 52 ||||||||||||||||||||| Sbjct: 1326759 gcgccgcaccgcaccgcaccc 1326779 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 24166180 gcgccgcaccgcaccgcacc 24166161 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcggcgccggcggcggacg 329 |||||||||||||||||||| Sbjct: 7937716 ggcggcgccggcggcggacg 7937697
>gb|AC093766.3| Homo sapiens BAC clone RP11-98O2 from 4, complete sequence Length = 168569 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 63429 ccaaaccagaccagaccaaac 63409
>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0047D12 Length = 145981 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 gcagcgcgtggcggcgccggcggcg 325 |||||||||||||||| |||||||| Sbjct: 93857 gcagcgcgtggcggcgacggcggcg 93833
>gb|AE004821.1| Pseudomonas aeruginosa PAO1, section 382 of 529 of the complete genome Length = 10842 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 gcggcgccggcggcggacgtg 331 ||||||||||||||||||||| Sbjct: 9735 gcggcgccggcggcggacgtg 9715
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 gcgccgcaccgcaccgcaccc 52 ||||||||||||||||||||| Sbjct: 8031 gcgccgcaccgcaccgcaccc 8051
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 102 cgatgccgacgccgtacagcgcggcggcg 130 |||||||| ||| |||||||||||||||| Sbjct: 4262135 cgatgccgccgcggtacagcgcggcggcg 4262163 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gcggcgccggcggcggacgt 330 |||||||||||||||||||| Sbjct: 1950421 gcggcgccggcggcggacgt 1950440
>gb|AY954521.1| Taenia saginata isolate Dali 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 698 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 cagcgccgcaccgcaccgcac 50 ||||||||||||||||||||| Sbjct: 561 cagcgccgcaccgcaccgcac 541
>dbj|AK070057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041K22, full insert sequence Length = 3467 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 gcagcgcgtggcggcgccggcggcg 325 |||||||||||||||| |||||||| Sbjct: 46 gcagcgcgtggcggcgacggcggcg 22
>emb|CR761108.2| Xenopus tropicalis finished cDNA, clone TEgg048h07 Length = 1830 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 ctgcagcagcaccaccggctggtat 155 |||||||| |||||||||||||||| Sbjct: 380 ctgcagcatcaccaccggctggtat 356
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 ggtgcagcgcgtggcggcgcc 318 ||||||||||||||||||||| Sbjct: 1427161 ggtgcagcgcgtggcggcgcc 1427181
>gb|AC161596.2| Mus musculus BAC clone RP23-477K6 from chromosome 9, complete sequence Length = 187832 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 152422 ccaaaccagaccagaccaaac 152442
>gb|U29489.1|MMU29489 Mus musculus retinoic acid receptor alpha-regulated E3 protein gene, promoter region Length = 920 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 386 ccaaaccagaccagaccaaac 406
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 286 ctgctcggcggtggtgcagcgcgtggcgg 314 |||||||||||||||| ||||||||||| Sbjct: 1495965 ctgctcggcggtggtgtcgcgcgtggcgg 1495937
>emb|AL773538.7| Mouse DNA sequence from clone RP23-14I24 on chromosome 2, complete sequence Length = 178544 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 100013 ccaaaccagaccagaccaaac 100033
>emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chromosome 2, complete sequence Length = 191638 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 34023 ccaaaccagaccagaccaaac 34043
>gb|L12254.1|BCCACTINA Bactrocera dorsalis (clones pBdA2.1 and pBdA2) muscle-specific actin gene, complete cds Length = 4230 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 28 accagcgccgcaccgcaccgcaccc 52 |||||||||||||||||| |||||| Sbjct: 93 accagcgccgcaccgcacagcaccc 117
>emb|AL133401.16| Mouse DNA sequence from clone RP21-72L18 on chromosome 5, complete sequence Length = 158344 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ccaaaccagaccagaccaaac 25 ||||||||||||||||||||| Sbjct: 9651 ccaaaccagaccagaccaaac 9671
>gb|AY785899.1| Sorghum bicolor cultivar BTX 623 SbCBF6 (CBF6) mRNA, complete cds Length = 958 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 cgctgctggacggggacggcggcg 416 |||||||||||||||||| ||||| Sbjct: 571 cgctgctggacggggacgacggcg 548
>gb|AC157992.7| Mus musculus chromosome 8, clone RP23-302J17, complete sequence Length = 196519 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caaaccagaccagaccaaac 25 |||||||||||||||||||| Sbjct: 91163 caaaccagaccagaccaaac 91144
>gb|AC158551.5| Mus musculus chromosome 8, clone RP23-466C10, complete sequence Length = 177561 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 caaaccagaccagaccaaac 25 |||||||||||||||||||| Sbjct: 30906 caaaccagaccagaccaaac 30925
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 141245 gccggtgctgctgctcggcg 141264
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 cggtgccgccggaggtggcgcggc 251 ||||||||||| |||||||||||| Sbjct: 1467416 cggtgccgccgcaggtggcgcggc 1467439
>ref|NM_192520.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 6624 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggcggcgccggcggcggacg 329 |||||||||||||||||||| Sbjct: 75 ggcggcgccggcggcggacg 94
>gb|AC135927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B02, complete sequence Length = 146435 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 108776 gcgccgcaccgcaccgcacc 108757
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgtggcggcgccggcggcgg 326 |||||||||||||||||||| Sbjct: 2061765 cgtggcggcgccggcggcgg 2061784
>ref|XM_866562.1| PREDICTED: Bos taurus similar to zinc finger protein 14 (KOX 6) (LOC508145), mRNA Length = 2628 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 gtggtgtcgggcctccccgc 460 |||||||||||||||||||| Sbjct: 318 gtggtgtcgggcctccccgc 337
>ref|XM_960872.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_1270) partial mRNA Length = 666 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ctgcagcagcaccaccggct 150 |||||||||||||||||||| Sbjct: 550 ctgcagcagcaccaccggct 531
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 1553780 gccggtgctgctgctcggcg 1553761 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 ccgatgccgacgccgtacagcgcg 124 |||||||||||||||| ||||||| Sbjct: 1318201 ccgatgccgacgccgtgcagcgcg 1318178
>gb|AE009377.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 147 of 187 of the complete sequence Length = 9922 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 cggtggtgcagcgcgtggcggcgc 317 ||||| |||||||||||||||||| Sbjct: 9098 cggtgatgcagcgcgtggcggcgc 9075
>gb|AE008237.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 41 of 187 of the complete sequence Length = 10647 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cggtggtgcagcgcgtggcggcgc 317 ||||| |||||||||||||||||| Sbjct: 3594 cggtgatgcagcgcgtggcggcgc 3617
>gb|AC121366.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0111K12, complete sequence Length = 127901 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 36620 gcgccgcaccgcaccgcacc 36601
>ref|XM_888176.2| PREDICTED: Mus musculus RIKEN cDNA 4933424A20 gene (4933424A20Rik), mRNA Length = 2521 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 agcgcgtggcggcgccggcggcgg 326 |||||||||||||| ||||||||| Sbjct: 222 agcgcgtggcggcggcggcggcgg 245
>ref|XM_982450.1| PREDICTED: Mus musculus RIKEN cDNA 4933424A20 gene (4933424A20Rik), mRNA Length = 2521 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 agcgcgtggcggcgccggcggcgg 326 |||||||||||||| ||||||||| Sbjct: 222 agcgcgtggcggcggcggcggcgg 245
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 3438013 gccggtgctgctgctcggcg 3437994 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 584523 gccggtgctgctgctcggcg 584542
>gb|BC092550.1| Xenopus tropicalis MGC107938 protein, mRNA (cDNA clone MGC:107938 IMAGE:7024875), complete cds Length = 1527 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 caaacaagcagccagccaga 79 |||||||||||||||||||| Sbjct: 499 caaacaagcagccagccaga 518
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 55117 gccggtgctgctgctcggcg 55136
>emb|AL121936.17|HSBK14H9 Human DNA sequence from clone CTA-14H9 on chromosome 6 Contains the 3' end of the BTN2A1 gene encoding butyrophilin 2A, the BTN1A1 gene encoding butyrophilin 1A, part of a novel gene, the HMG17L3 gene encoding two variants of the high-mobility group (nonhistone chromosomal) protein 17-like 3, 2 CpG islands, ESTs, STSs and GSSs, complete sequence Length = 122979 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaacgaa 28 |||||||||||||||||| ||||| Sbjct: 53454 ccaaaccagaccagaccagacgaa 53431
>emb|AL109865.36|HSG120K12 Human DNA sequence from clone GS1-120K12 on chromosome 1q25.3-31.2 Contains the 5' end of the C1orf24 gene for chromosome 1 open reading frame 24, the RNF2 gene for ring finger protein 2, a ferritin heavy polypeptide (FTH) pseudogene and the 3' end of the C1orf25 gene for chromosome 1 open reading frame 25, complete sequence Length = 201823 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 acaagcagccagccagacag 82 |||||||||||||||||||| Sbjct: 15121 acaagcagccagccagacag 15102
>ref|NM_001030496.1| Xenopus tropicalis MGC107938 protein (MGC107938), mRNA Length = 1527 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 caaacaagcagccagccaga 79 |||||||||||||||||||| Sbjct: 499 caaacaagcagccagccaga 518
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 2789447 gccggtgctgctgctcggcg 2789466
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 392 gcgctgctggacggggacggcggcgtgg 419 ||||||||||||| || ||||||||||| Sbjct: 157052 gcgctgctggacgtggtcggcggcgtgg 157079
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 392 gcgctgctggacggggacggcggcgtgg 419 ||||||||||||| || ||||||||||| Sbjct: 109723 gcgctgctggacgtggtcggcggcgtgg 109750
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 2888525 gccggtgctgctgctcggcg 2888506 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 ccgatgccgacgccgtacagcgcg 124 |||||||||||||||| ||||||| Sbjct: 2635568 ccgatgccgacgccgtgcagcgcg 2635545
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 ctgcagcagcaccaccggct 150 |||||||||||||||||||| Sbjct: 155242 ctgcagcagcaccaccggct 155223
>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04, complete sequence Length = 155372 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 56007 gcgccgcaccgcaccgcacc 56026
>gb|AC079328.11| Homo sapiens chromosome 15, clone RP11-244F12, complete sequence Length = 179402 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccaaaccagaccagaccaaa 24 |||||||||||||||||||| Sbjct: 62227 ccaaaccagaccagaccaaa 62208
>gb|AC099675.2| Homo sapiens chromosome 1 clone RP11-459D6, complete sequence Length = 162806 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 agcgcgtggcggcgccggcggcgg 326 |||||||||||||| ||||||||| Sbjct: 64354 agcgcgtggcggcggcggcggcgg 64377
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 ggcgccggggggccggtgctgctg 288 |||||| ||||||||||||||||| Sbjct: 1087106 ggcgcctgggggccggtgctgctg 1087083
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 349653 gccggtgctgctgctcggcg 349672 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 ccgatgccgacgccgtacagcgcg 124 |||||||||||||||| ||||||| Sbjct: 124629 ccgatgccgacgccgtgcagcgcg 124652
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgcggcggcgctgcagcagc 140 |||||||||||||||||||| Sbjct: 25539991 cgcggcggcgctgcagcagc 25540010
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 14730858 gcgccgcaccgcaccgcacc 14730877
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 ggacggggacggcggcgtgggcacgctccgcg 431 |||||| | ||||||||||||| ||||||||| Sbjct: 20463265 ggacggcgtcggcggcgtgggcgcgctccgcg 20463234
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcagcgcgtggcggcgccgg 320 |||||||||||||||||||| Sbjct: 21208792 gcagcgcgtggcggcgccgg 21208811
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgtggcggcgccggcggcgg 326 |||||||||||||||||||| Sbjct: 87149 cgtggcggcgccggcggcgg 87130
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 cgccgtacagcgcggcggcg 130 |||||||||||||||||||| Sbjct: 3304037 cgccgtacagcgcggcggcg 3304018
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggcggcgccggcggcggacg 329 |||||||||||||||||||| Sbjct: 82384 ggcggcgccggcggcggacg 82403
>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456F09 Length = 141336 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcagcgcgtggcggcgccgg 320 |||||||||||||||||||| Sbjct: 107453 gcagcgcgtggcggcgccgg 107472
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcagcgcgtggcggcgccgg 320 |||||||||||||||||||| Sbjct: 4168 gcagcgcgtggcggcgccgg 4187
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggcggcgccggcggcggacg 329 |||||||||||||||||||| Sbjct: 23061 ggcggcgccggcggcggacg 23080
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 ggacggggacggcggcgtgggcacgctccgcg 431 |||||| | ||||||||||||| ||||||||| Sbjct: 91404 ggacggcgtcggcggcgtgggcgcgctccgcg 91373
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcggcgccggcggcggacg 329 |||||||||||||||||||| Sbjct: 61131 ggcggcgccggcggcggacg 61112
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 124921 gcgccgcaccgcaccgcacc 124902
>dbj|AK120909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033B18, full insert sequence Length = 2177 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 234 gcgccgcaccgcaccgcacc 215
>ref|XM_317358.2| Anopheles gambiae str. PEST ENSANGP00000010420 (ENSANGG00000007931), partial mRNA Length = 3171 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 cagcagcaccaccggctggt 153 |||||||||||||||||||| Sbjct: 66 cagcagcaccaccggctggt 47
>dbj|AK108037.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C10, full insert sequence Length = 1326 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcggcgccggcggcggacg 329 |||||||||||||||||||| Sbjct: 207 ggcggcgccggcggcggacg 188
>dbj|AK107448.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C02, full insert sequence Length = 880 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gcagcgcgtggcggcgccgg 320 |||||||||||||||||||| Sbjct: 209 gcagcgcgtggcggcgccgg 228
>dbj|AK106815.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D02, full insert sequence Length = 1927 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 ggacggggacggcggcgtgggcacgctccgcg 431 |||||| | ||||||||||||| ||||||||| Sbjct: 457 ggacggcgtcggcggcgtgggcgcgctccgcg 426
>emb|AJ336475.1|HSA336475 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DI20C Length = 596 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cgcgctgctggacggggacggcggcgtg 418 |||||||||| |||| |||||||||||| Sbjct: 40 cgcgctgctgcacggcgacggcggcgtg 67
>emb|AJ336474.1|HSA336474 Homo sapiens genomic sequence surrounding NotI site, clone HSJ-CK14C Length = 625 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cgcgctgctggacggggacggcggcgtg 418 |||||||||| |||| |||||||||||| Sbjct: 40 cgcgctgctgcacggcgacggcggcgtg 67
>dbj|AK100213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044C16, full insert sequence Length = 1469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 20 gcgccgcaccgcaccgcacc 39
>emb|AJ328518.1|HSA328518 Homo sapiens genomic sequence surrounding NotI site, clone HSJ-CJ22RS Length = 727 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cgcgctgctggacggggacggcggcgtg 418 |||||||||| |||| |||||||||||| Sbjct: 180 cgcgctgctgcacggcgacggcggcgtg 207
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 gccggtgctgctgctcggcg 295 |||||||||||||||||||| Sbjct: 3375103 gccggtgctgctgctcggcg 3375122 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgtggcggcgccggcggcgg 326 |||||||||||||||||||| Sbjct: 3145688 cgtggcggcgccggcggcgg 3145669
>tpe|BN000559.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx30 gene for class III peroxidase 30 precursor, exons 1-2 Length = 1059 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcggcgccggcggcggacg 329 |||||||||||||||||||| Sbjct: 72 ggcggcgccggcggcggacg 53
>dbj|AB096082.1| Magnetospirillum magneticum mms5 gene for tightly bound bacterial magnetic particle protein, complete cds, strain:AMB-1 Length = 1819 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 ggcgccggggggccggtgctgctg 288 |||||| ||||||||||||||||| Sbjct: 855 ggcgcctgggggccggtgctgctg 878
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gagcaccgatgccgacgccg 115 |||||||||||||||||||| Sbjct: 3215274 gagcaccgatgccgacgccg 3215293
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ggcggtggtgcagcgcgtgg 311 |||||||||||||||||||| Sbjct: 4065839 ggcggtggtgcagcgcgtgg 4065820 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 ggtgccgccggaggtggcgcggca 252 ||||||||||||| |||||||||| Sbjct: 3715191 ggtgccgccggagctggcgcggca 3715168
>gb|DQ328762.1| Ergasilus briani strain EBN 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 1017 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cagccagccagacagcaagc 87 |||||||||||||||||||| Sbjct: 164 cagccagccagacagcaagc 145
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gcgccgcaccgcaccgcacc 51 |||||||||||||||||||| Sbjct: 14739099 gcgccgcaccgcaccgcacc 14739118
>emb|AJ628955.2| Streptomyces rimosus subsp. paromomycinus genomic region of the paromomycin biosynthesis gene cluster, strain NRRL 2455 Length = 48169 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 cgctgctggacggggacggc 412 |||||||||||||||||||| Sbjct: 32559 cgctgctggacggggacggc 32578
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgcggcggcgctgcagcagc 140 |||||||||||||||||||| Sbjct: 25468167 cgcggcggcgctgcagcagc 25468186
>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144084 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgcggcggcgctgcagcagc 140 |||||||||||||||||||| Sbjct: 109373 cgcggcggcgctgcagcagc 109392
>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence Length = 53591 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gtggcggcgccggcggcgga 327 |||||||||||||||||||| Sbjct: 16061 gtggcggcgccggcggcgga 16042
>gb|AF052298.1|AF052298 Drosophila silvestris Y box protein (YB-1) mRNA, complete cds Length = 1696 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 293 gcggtggtgcagcgcgtggcggcgccggcggc 324 ||||||||||| | |||||||||| ||||||| Sbjct: 839 gcggtggtgcaccacgtggcggcggcggcggc 870
>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete sequence Length = 188772 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 303 agcgcgtggcggcgccggcggcgg 326 |||||||||||||| ||||||||| Sbjct: 30860 agcgcgtggcggcggcggcggcgg 30837 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,178,316 Number of Sequences: 3902068 Number of extensions: 3178316 Number of successful extensions: 98272 Number of sequences better than 10.0: 129 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90644 Number of HSP's gapped (non-prelim): 7616 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
