>MYH6_RABIT (P04460) Myosin heavy chain, cardiac muscle alpha isoform|
           (MyHC-alpha) (Alpha isomyosin) (Fragment)
          Length = 465

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 17/52 (32%), Positives = 34/52 (65%)
 Frame = +1

Query: 268 STDSALHWRRRADSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQ 423
           +T SAL  R+ ADSV  E  E++ NLQ     LE++ ++F+ ++++++  ++
Sbjct: 384 ATASALR-RKHADSVA-ELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNME 433

>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor|
            (LRP) (Alpha-2-macroglobulin receptor) (A2MR)
          Length = 4543

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 24/96 (25%), Positives = 40/96 (41%)
 Frame = +1

Query: 217  TLGCVCAFLYPDGFISRSTDSALHWRRRADSVTCETSEEVTNLQSQLASLERKNADFRKQ 396
            T  C    L  DG   R  D  L +  R    +   S+E  NL + +   E  +A+  K 
Sbjct: 2175 TCACAHGMLSEDGVSCRDYDGYLLYSERTILKSIHLSDE-NNLNAPIKPFE--DAEHMKN 2231

Query: 397  INELSMKLQLAGQGKNQALYSAGPFGTVKALRTNPT 504
            +  L+   +   +G N+  YS   FG ++ +  + T
Sbjct: 2232 VIALAFDYRYGTKGSNRIFYSDIHFGNIQQINDDGT 2267

>ATG11_EMENI (Q5B993) Autophagy-related protein 11|
          Length = 1371

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 265  RSTDSALHWRRRADSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQLAG 432
            RS + AL WR+RA++++    +    +  + A LE  +     Q+ +L   L+  G
Sbjct: 884  RSEEEALQWRKRAEALSESDKQVAARIDIRTARLEELSRQLFGQVEKLERMLEQLG 939

>CTGE4_HUMAN (Q8IX94) Cutaneous T-cell lymphoma-associated antigen 4 (cTAGE-4|
           protein)
          Length = 504

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 304 DSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQL 426
           D    E +E + NLQ+Q ASL+ +N  F  +  +L  KL++
Sbjct: 72  DKTKEELTEHIKNLQTQQASLQSENIYFESENQKLQQKLKI 112

>CTGE2_HUMAN (Q96RT6) Protein cTAGE-2|
          Length = 754

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 304 DSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQL 426
           D    E +E + NLQ++ ASL+ +N  F  +  +L  KL++
Sbjct: 314 DKTKEELTEHIKNLQTEQASLQSENTHFESENQKLQQKLKV 354

>MKL2_HUMAN (Q9ULH7) MKL/myocardin-like protein 2 (Myocardin-related|
           transcription factor B) (MRTF-B) (Megakaryoblastic
           leukemia 2)
          Length = 1088

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +1

Query: 229 VCAFLYPDGFISRSTDSALHWRRRADSVTCETSEEVTNLQSQLASLERKNADFRKQINEL 408
           +   + P  F+S    S L      DS++  TS  ++NL+   A  +RK  +  KQI EL
Sbjct: 518 IMTMMSPSQFLS---SSPLRMTNNEDSLS-PTSSTLSNLELDAAEKDRKLQEKEKQIEEL 573

Query: 409 SMKLQ 423
             KL+
Sbjct: 574 KRKLE 578

>CTGE5_HUMAN (O15320) Cutaneous T-cell lymphoma-associated antigen 5 (cTAGE-5|
           protein) (cTAGE family member 5) (Meningioma-expressed
           antigen 6/11) (MEA6/MEA11)
          Length = 804

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 304 DSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQL 426
           D    E +E + NLQ++ ASL+ +N  F  +  +L  KL++
Sbjct: 344 DKTKEELTEHIKNLQTEQASLQSENTHFENENQKLQQKLKV 384

>RDRP_NODAV (Q9IMM4) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA|
            replicase) (Protein A)
          Length = 1043

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 300  PATPVKG*VGGARDEAVGVEERADAAESNADGHRRRDAGPAGRR 169
            P  P K   GGARD        +  ++  A+G  R   GPAG R
Sbjct: 996  PGPPAKTTAGGARDGNQARAPTSGPSKRQAEGRSRSSRGPAGSR 1039

>UBIE_CHLTE (Q8KF69) Menaquinone biosynthesis methyltransferase ubiE (EC|
           2.1.1.-)
          Length = 242

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 88  VAAVASRRQMAGRREPPLMRTGLGSGQPPSRGSRIAAAVAVGVTL 222
           VAA  +R+Q+ G REP ++    G+G   +  ++I  A   G  L
Sbjct: 50  VAAKKARKQLEGEREPKILDVATGTGDLAASMAKIPGAKVTGYDL 94

>BICD_DROME (P16568) Cytoskeleton-like bicaudal D protein|
          Length = 782

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 313 TCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQLAGQGKNQA 450
           T     EVTNL+++L + E+K+ D +  +  L+   Q AGQ    A
Sbjct: 444 TTTLRNEVTNLKNKLLATEQKSLDLQSDVQTLTHISQNAGQSLGSA 489

>HMMR_RAT (P97779) Hyaluronan-mediated motility receptor (Intracellular|
           hyaluronic acid-binding protein) (Receptor for
           hyaluronan-mediated motility)
          Length = 498

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 310 VTCETSEEVTNLQSQLASLERKNADFRKQINELSMKL 420
           +T    E++T+LQ+QL    ++N DFRKQ+ E   K+
Sbjct: 314 ITSSYLEKITDLQNQL---RQQNEDFRKQLEEEGAKM 347

>BOS1_YEAST (P25385) Vesicular transport protein BOS1|
          Length = 244

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +1

Query: 301 ADSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQLAGQGKNQALYSAGPFGTV 480
           A+ +  + +  +  L   L     K  D ++  NE + + QL G G +  + S  PF T 
Sbjct: 64  AEEIDPKFANRLATLTQDLHDFTAKFKDLKQSYNENNSRTQLFGSGASHVMDSDNPFSTS 123

Query: 481 KALRTNPTV 507
           + +     V
Sbjct: 124 ETIMNKRNV 132

>PRGR_CHICK (P07812) Progesterone receptor (PR)|
          Length = 786

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 270 GARDEAVGVEERA---DAAESNADGHRRRDAGPAGRRLPAAQAGTHQGGLAPAGHLSP 106
           GA    V V+ R    DA+E+ A G      G   R  P   AG  +GGLAPA   SP
Sbjct: 158 GADSLNVAVKARPGPEDASENRAPGL----PGAEERGFPERDAGPGEGGLAPAAAASP 211

>NF2L3_HUMAN (Q9Y4A8) Nuclear factor erythroid 2-related factor 3 (NF-E2-related|
           factor 3) (NFE2-related factor 3) (Nuclear factor,
           erythroid derived 2, like 3)
          Length = 694

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 277 SALHWRRRADSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKL 420
           +A + R+R   +     ++V NLQ++  +L+R+ A   K IN +  KL
Sbjct: 591 AAQNCRKRKLDIILNLEDDVCNLQAKKETLKREQAQCNKAINIMKQKL 638

>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 34/124 (27%), Positives = 50/124 (40%)
 Frame = +1

Query: 37  GIHQISLRRSHSIRQISVAAVASRRQMAGRREPPLMRTGLGSGQPPSRGSRIAAAVAVGV 216
           GI +  L  ++S+RQ   A     +   G R  PL      S   P   ++IA   +  +
Sbjct: 421 GISEKYLPPTNSVRQ---AQEEFDKLFPGYRTNPLTLVIQTSNHQPVTDAQIADIRSKAM 477

Query: 217 TLGCVCAFLYPDGFISRSTDSALHWRRRADSVTCETSEEVTNLQSQLASLERKNADFRKQ 396
            +G         GFI    D A  W+ RA +V       V  LQ+ L +     AD  K+
Sbjct: 478 AIG---------GFIEPDNDPANMWQERAYAVGASKDPSVRVLQNGLIN----PADASKK 524

Query: 397 INEL 408
           + EL
Sbjct: 525 LTEL 528

>DYH1B_CHLRE (Q9MBF8) Dynein-1-beta heavy chain, flagellar inner arm I1 complex|
            (1-beta DHC) (Dynein-1, subspecies f)
          Length = 4513

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 233  QTQPRVTPTATAAAMRDPRDGGCPLPKPV 147
            Q+ PRV    T    RD  D G PLPKP+
Sbjct: 940  QSVPRVALQLTDKQRRDMEDAGLPLPKPL 968

>CP135_MOUSE (Q6P5D4) Centrosomal protein of 135 kDa (Cep135 protein)|
           (Centrosomal protein 4)
          Length = 1140

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 301 ADSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQ 423
           AD+   E  EEV  LQ +LA +E+   D+ KQI     ++Q
Sbjct: 202 ADNRIQELQEEVQQLQEKLAQMEKGVLDYSKQIELREREIQ 242

>ATG18_MAGGR (Q524W4) Autophagy-related protein 18|
          Length = 469

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 551 CNILASLGLVESSGMTVGFVLRAFTVPKGPALYK 450
           C  + S G + ++    G ++R FTVPKG  LY+
Sbjct: 195 CIAINSEGTLLATASETGTIIRVFTVPKGQKLYQ 228

>YJX4_SCHPO (Q9UU99) Protein C23B6.04c in chromosome III|
          Length = 1008

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
 Frame = +1

Query: 283 LHWRRRADSVTCETSEEVTNLQS-QLASLERKNADFRKQINELSMKLQLAGQGKNQALYS 459
           +H +  + S          NLQ  Q A+ + +NA+  +++ +  ++   A +  + A+ S
Sbjct: 80  VHTKTGSSSSPASKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKA-EANDAAMSS 138

Query: 460 AGPFGTVKALRTN----PTVMPDDSTNPRL 537
           + P  TV     N    P + PDDS  PRL
Sbjct: 139 SAP--TVDVSEGNSAAEPKITPDDSDTPRL 166

>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)|
          Length = 1947

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 283  LHWRRRADSVTCETSEEVTNLQSQLASLERKNADFRKQINELSMKLQLAGQGKNQ 447
            L  R +AD    E S ++ +  S    L  +N+D  +Q+ EL  K+Q A + K Q
Sbjct: 1273 LELRLKAD----EQSRQLQDFVSSKGRLNSENSDLARQVEELEAKIQAANRLKLQ 1323

>WIPI1_MOUSE (Q8R3E3) WD-repeat domain phosphoinositide-interacting protein 1|
           (WIPI-1) (WD40 repeat protein interacting with
           phosphoinositides of 49 kDa) (WIPI 49-kDa)
          Length = 446

 Score = 24.6 bits (52), Expect(2) = 7.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 536 SLGLVESSGMTVGFVLRAFTVPKGPALYK 450
           S G   +S    G V+R F+VP+G  LY+
Sbjct: 196 SSGSKLASASEKGTVIRVFSVPEGQKLYE 224



 Score = 23.1 bits (48), Expect(2) = 7.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 471 KRTSTIQSLVFSLSSQ 424
           KR  TI SLVFS+ SQ
Sbjct: 230 KRYVTISSLVFSMDSQ 245

>BASP_RAT (Q05175) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 219

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 255 AVGVEERADAAESNADGHRRRDAGPAGRRLPAAQAGTHQGGLAPA 121
           A G E ++DAA + +D     +  P+ +  PAA         APA
Sbjct: 150 AAGPEAKSDAAPAASDSKPSTEPAPSSKETPAASEAPSSAAKAPA 194

>Y233_MYCPN (P75538) Hypothetical lipoprotein MG095 homolog precursor|
           (G07_orf454)
          Length = 454

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = +1

Query: 235 AFLYPDGFISRSTDSALHWRRRADSVTCETSEEVTNLQSQLASLERKNADFRKQINELSM 414
           +FLYP       + S+ +W    D     T  E TNL + L   + +   F   I +  +
Sbjct: 359 SFLYPANLNETPSSSSSYWTNVTDLTKAATDTENTNLLNDLQKSQEQVNQFVAAITQNHL 418

Query: 415 KLQLAGQGKNQ 447
            +  A   K Q
Sbjct: 419 DVSEAALTKKQ 429

>RF2_MYCTU (P66026) Peptide chain release factor 2 (RF-2)|
          Length = 371

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
 Frame = +1

Query: 247 PDGFISRSTDSALHWRRRADSVTCETSEEVTNLQSQLAS--------LERKNADFRKQIN 402
           P G    +TDSA+        +      E + LQ+++A+        LERK  + R +++
Sbjct: 250 PGGQSVNTTDSAVRLTHIPSGIVVTCQNEKSQLQNKIAAMRVLQAKLLERKRLEERAELD 309

Query: 403 ELSMKLQLAGQGKNQALYSAGPFGTVKALRT-----NPTVMPD 516
            L      +  G     Y   P+  VK LRT     NP  + D
Sbjct: 310 ALKAD-GGSSWGNQMRSYVLHPYQMVKDLRTEYEVGNPAAVLD 351

>RF2_MYCBO (P66027) Peptide chain release factor 2 (RF-2)|
          Length = 371

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
 Frame = +1

Query: 247 PDGFISRSTDSALHWRRRADSVTCETSEEVTNLQSQLAS--------LERKNADFRKQIN 402
           P G    +TDSA+        +      E + LQ+++A+        LERK  + R +++
Sbjct: 250 PGGQSVNTTDSAVRLTHIPSGIVVTCQNEKSQLQNKIAAMRVLQAKLLERKRLEERAELD 309

Query: 403 ELSMKLQLAGQGKNQALYSAGPFGTVKALRT-----NPTVMPD 516
            L      +  G     Y   P+  VK LRT     NP  + D
Sbjct: 310 ALKAD-GGSSWGNQMRSYVLHPYQMVKDLRTEYEVGNPAAVLD 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,538,851
Number of Sequences: 219361
Number of extensions: 1372173
Number of successful extensions: 5043
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5041
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)