Clone Name | bart29a10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478924.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1281 Score = 303 bits (153), Expect = 3e-79 Identities = 330/389 (84%) Strand = Plus / Plus Query: 163 gggcagccgccgtcccgcgggtcccgcatcgcggcggcggtggccgtcggcgttactctc 222 |||||||||| || |||||||| ||||||||||||||||| ||||||||||| | ||| Sbjct: 55 gggcagccgctctcgcgcgggtcgcgcatcgcggcggcggtcgccgtcggcgtcgcgctc 114 Query: 223 ggctgcgtctgcgcgttcctctaccccgacggcttcatctctcgctccaccgactcagcc 282 |||||||| ||||| |||||||||||||||||| || |||| |||||| ||||| | ||| Sbjct: 115 ggctgcgtgtgcgccttcctctaccccgacggcctcctctcccgctcctccgacgccgcc 174 Query: 283 cttcactggcgtcgccgggctgactcagttacttgtgagacatcggaggaagttaccaac 342 || || |||| ||||| ||||||||||||| | |||||||| || |||| |||||||| | Sbjct: 175 ctccattggcctcgccaggctgactcagttgcctgtgagacttctgagggagttaccagc 234 Query: 343 ctacagtcacagttggcatcattggagagaaaaaatgctgacttcaggaagcagatcaat 402 ||| ||||||| | | || |||||||| ||||||||||| || ||||||||||| ||| Sbjct: 235 ctaaagtcacatgtagtattgttggagaggaaaaatgctgaatttaggaagcagattaat 294 Query: 403 gaactctcgatgaagcttcaattggctggacaaggaaaaaaccaggctttgtatagtgct 462 ||||| | |||||||||||||| ||||| ||||||||| || ||| | | |||| ||| Sbjct: 295 gaactaacaatgaagcttcaattagctgggcaaggaaaagacgaggttctatataaggct 354 Query: 463 ggtccttttggtactgtgaaggctcttagaacaaatccaacggtcatgcctgatgactcc 522 ||||||||||||||||| |||||| |||||| ||||||||| || || |||||||| ||| Sbjct: 355 ggtccttttggtactgtcaaggctattagaaaaaatccaacagttatccctgatgaatcc 414 Query: 523 accaatcccagactggccaagatattgca 551 | ||||||||| |||||||||||||||| Sbjct: 415 ataaatcccagattggccaagatattgca 443
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 190 bits (96), Expect = 3e-45 Identities = 213/252 (84%) Strand = Plus / Minus Query: 300 ggctgactcagttacttgtgagacatcggaggaagttaccaacctacagtcacagttggc 359 ||||||||||||| | |||||||| || |||| |||||||| |||| ||||||| | | Sbjct: 23835929 ggctgactcagttgcctgtgagacttctgagggagttaccagcctaaagtcacatgtagt 23835870 Query: 360 atcattggagagaaaaaatgctgacttcaggaagcagatcaatgaactctcgatgaagct 419 || |||||||| ||||||||||| || ||||||||||| |||||||| | |||||||| Sbjct: 23835869 attgttggagaggaaaaatgctgaatttaggaagcagattaatgaactaacaatgaagct 23835810 Query: 420 tcaattggctggacaaggaaaaaaccaggctttgtatagtgctggtccttttggtactgt 479 |||||| ||||| ||||||||| || ||| | | |||| |||||||||||||||||||| Sbjct: 23835809 tcaattagctgggcaaggaaaagacgaggttctatataaggctggtccttttggtactgt 23835750 Query: 480 gaaggctcttagaacaaatccaacggtcatgcctgatgactccaccaatcccagactggc 539 |||||| |||||| ||||||||| || || |||||||| |||| ||||||||| |||| Sbjct: 23835749 caaggctattagaaaaaatccaacagttatccctgatgaatccataaatcccagattggc 23835690 Query: 540 caagatattgca 551 |||||||||||| Sbjct: 23835689 caagatattgca 23835678 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Minus Query: 163 gggcagccgccgtcccgcgggtcccgcatcgcggcggcggtggccgtcggcgttactctc 222 |||||||||| || |||||||| ||||||||||||||||| ||||||||||| | ||| Sbjct: 23837876 gggcagccgctctcgcgcgggtcgcgcatcgcggcggcggtcgccgtcggcgtcgcgctc 23837817 Query: 223 ggctgcgtctgcgcgttcctctaccccgacggcttcatctctcgctccaccgactcagcc 282 |||||||| ||||| |||||||||||||||||| || |||| |||||| ||||| | ||| Sbjct: 23837816 ggctgcgtgtgcgccttcctctaccccgacggcctcctctcccgctcctccgacgccgcc 23837757 Query: 283 cttcactggcgtcgcc 298 || || |||| ||||| Sbjct: 23837756 ctccattggcctcgcc 23837741
>dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_C01 Length = 97427 Score = 190 bits (96), Expect = 3e-45 Identities = 213/252 (84%) Strand = Plus / Minus Query: 300 ggctgactcagttacttgtgagacatcggaggaagttaccaacctacagtcacagttggc 359 ||||||||||||| | |||||||| || |||| |||||||| |||| ||||||| | | Sbjct: 24429 ggctgactcagttgcctgtgagacttctgagggagttaccagcctaaagtcacatgtagt 24370 Query: 360 atcattggagagaaaaaatgctgacttcaggaagcagatcaatgaactctcgatgaagct 419 || |||||||| ||||||||||| || ||||||||||| |||||||| | |||||||| Sbjct: 24369 attgttggagaggaaaaatgctgaatttaggaagcagattaatgaactaacaatgaagct 24310 Query: 420 tcaattggctggacaaggaaaaaaccaggctttgtatagtgctggtccttttggtactgt 479 |||||| ||||| ||||||||| || ||| | | |||| |||||||||||||||||||| Sbjct: 24309 tcaattagctgggcaaggaaaagacgaggttctatataaggctggtccttttggtactgt 24250 Query: 480 gaaggctcttagaacaaatccaacggtcatgcctgatgactccaccaatcccagactggc 539 |||||| |||||| ||||||||| || || |||||||| |||| ||||||||| |||| Sbjct: 24249 caaggctattagaaaaaatccaacagttatccctgatgaatccataaatcccagattggc 24190 Query: 540 caagatattgca 551 |||||||||||| Sbjct: 24189 caagatattgca 24178 Score = 119 bits (60), Expect = 1e-23 Identities = 117/136 (86%) Strand = Plus / Minus Query: 163 gggcagccgccgtcccgcgggtcccgcatcgcggcggcggtggccgtcggcgttactctc 222 |||||||||| || |||||||| ||||||||||||||||| ||||||||||| | ||| Sbjct: 26376 gggcagccgctctcgcgcgggtcgcgcatcgcggcggcggtcgccgtcggcgtcgcgctc 26317 Query: 223 ggctgcgtctgcgcgttcctctaccccgacggcttcatctctcgctccaccgactcagcc 282 |||||||| ||||| |||||||||||||||||| || |||| |||||| ||||| | ||| Sbjct: 26316 ggctgcgtgtgcgccttcctctaccccgacggcctcctctcccgctcctccgacgccgcc 26257 Query: 283 cttcactggcgtcgcc 298 || || |||| ||||| Sbjct: 26256 ctccattggcctcgcc 26241
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence Length = 129608 Score = 48.1 bits (24), Expect = 0.031 Identities = 54/64 (84%) Strand = Plus / Minus Query: 188 gcatcgcggcggcggtggccgtcggcgttactctcggctgcgtctgcgcgttcctctacc 247 |||||||||||||||| ||||| ||| | | ||||||||| | ||| | |||||||||| Sbjct: 51638 gcatcgcggcggcggtcgccgttggcatcatgctcggctgcttgtgcaccttcctctacc 51579 Query: 248 ccga 251 |||| Sbjct: 51578 ccga 51575
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.031 Identities = 54/64 (84%) Strand = Plus / Minus Query: 188 gcatcgcggcggcggtggccgtcggcgttactctcggctgcgtctgcgcgttcctctacc 247 |||||||||||||||| ||||| ||| | | ||||||||| | ||| | |||||||||| Sbjct: 4661505 gcatcgcggcggcggtcgccgttggcatcatgctcggctgcttgtgcaccttcctctacc 4661446 Query: 248 ccga 251 |||| Sbjct: 4661445 ccga 4661442
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.031 Identities = 78/96 (81%) Strand = Plus / Minus Query: 181 gggtcccgcatcgcggcggcggtggccgtcggcgttactctcggctgcgtctgcgcgttc 240 ||||| ||||||||||||||||| ||| ||||||| | ||| | || || || || ||| Sbjct: 8661321 gggtcgcgcatcgcggcggcggtcgccatcggcgtcgcgctcagttgtgtgtgagccttc 8661262 Query: 241 ctctaccccgacggcttcatctctcgctccaccgac 276 ||||||||||||| || |||| |||||| ||||| Sbjct: 8661261 atctaccccgacgggctcctctcccgctcctccgac 8661226
>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0463G12 Length = 145403 Score = 48.1 bits (24), Expect = 0.031 Identities = 78/96 (81%) Strand = Plus / Minus Query: 181 gggtcccgcatcgcggcggcggtggccgtcggcgttactctcggctgcgtctgcgcgttc 240 ||||| ||||||||||||||||| ||| ||||||| | ||| | || || || || ||| Sbjct: 68368 gggtcgcgcatcgcggcggcggtcgccatcggcgtcgcgctcagttgtgtgtgagccttc 68309 Query: 241 ctctaccccgacggcttcatctctcgctccaccgac 276 ||||||||||||| || |||| |||||| ||||| Sbjct: 68308 atctaccccgacgggctcctctcccgctcctccgac 68273
>ref|NM_188970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1269 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 76 cgccagatctcggtggcggcggtggc 101 ||||||| |||||||||||||||||| Sbjct: 1051 cgccagagctcggtggcggcggtggc 1076
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 gcggcggcggtggccgtcggcg 214 |||||||||||||||||||||| Sbjct: 107062 gcggcggcggtggccgtcggcg 107041
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 76 cgccagatctcggtggcggcggtggc 101 ||||||| |||||||||||||||||| Sbjct: 20483736 cgccagagctcggtggcggcggtggc 20483711
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 76 cgccagatctcggtggcggcggtggc 101 ||||||| |||||||||||||||||| Sbjct: 114366 cgccagagctcggtggcggcggtggc 114341
>ref|XM_526743.1| PREDICTED: Pan troglodytes similar to Ten-m3 (LOC471361), mRNA Length = 5439 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 4230 acagtcacagttggcatcatt 4210
>gb|AC131915.7| Mus musculus chromosome 5, clone RP24-491C20, complete sequence Length = 154195 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 468 ttttggtactgtgaaggctct 488 ||||||||||||||||||||| Sbjct: 59220 ttttggtactgtgaaggctct 59240
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tcgcggcggcggtggccgtcg 211 ||||||||||||||||||||| Sbjct: 2458134 tcgcggcggcggtggccgtcg 2458114 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gtcccgcatcgcggcggcgg 202 |||||||||||||||||||| Sbjct: 1396801 gtcccgcatcgcggcggcgg 1396782
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tcgcggcggcggtggccgtcg 211 ||||||||||||||||||||| Sbjct: 3091413 tcgcggcggcggtggccgtcg 3091393
>gb|AE009103.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 129 of 256 of the complete sequence Length = 12058 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 ggcggcggtggccgtcggcgt 215 ||||||||||||||||||||| Sbjct: 3328 ggcggcggtggccgtcggcgt 3348
>ref|XM_532850.2| PREDICTED: Canis familiaris similar to odd Oz/ten-m homolog 3, transcript variant 1 (LOC475637), mRNA Length = 8193 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 4459 acagtcacagttggcatcatt 4439
>ref|XM_852730.1| PREDICTED: Canis familiaris similar to odd Oz/ten-m homolog 3, transcript variant 3 (LOC475637), mRNA Length = 8328 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 4594 acagtcacagttggcatcatt 4574
>ref|XM_852690.1| PREDICTED: Canis familiaris similar to odd Oz/ten-m homolog 3, transcript variant 2 (LOC475637), mRNA Length = 8508 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 4774 acagtcacagttggcatcatt 4754
>emb|AL158194.16| Human DNA sequence from clone RP11-429E17 on chromosome 13q13.1-14.2 Contains part of the LHFP gene for lipoma HMGIC fusion partner, complete sequence Length = 177019 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 aattggctggacaaggaaaaa 442 ||||||||||||||||||||| Sbjct: 173197 aattggctggacaaggaaaaa 173217
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 tcgcggcggcggtggccgtcg 211 ||||||||||||||||||||| Sbjct: 2821491 tcgcggcggcggtggccgtcg 2821471
>dbj|AK125869.1| Homo sapiens cDNA FLJ43881 fis, clone TESTI4009028, highly similar to Mus musculus odd Oz/ten-m homolog 3 (Drosophila) (Odz3) Length = 3394 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 2782 acagtcacagttggcatcatt 2762
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 ggcggcggtggccgtcggcgt 215 ||||||||||||||||||||| Sbjct: 1421097 ggcggcggtggccgtcggcgt 1421117
>ref|XM_940722.1| PREDICTED: Homo sapiens odz, odd Oz/ten-m homolog 3 (Drosophila), transcript variant 4 (ODZ3), mRNA Length = 8991 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 4492 acagtcacagttggcatcatt 4472
>ref|XM_371717.3| PREDICTED: Homo sapiens odz, odd Oz/ten-m homolog 3 (Drosophila), transcript variant 1 (ODZ3), mRNA Length = 8990 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 4491 acagtcacagttggcatcatt 4471
>ref|XM_681565.1| PREDICTED: Danio rerio similar to pro-alpha 1 type V/XI collagen (LOC558361), partial mRNA Length = 1083 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 ctcggtggcggcggtggcatc 104 ||||||||||||||||||||| Sbjct: 117 ctcggtggcggcggtggcatc 97
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 tcaggaagcagatcaatgaac 406 ||||||||||||||||||||| Sbjct: 522082 tcaggaagcagatcaatgaac 522062
>dbj|AB040888.2| Homo sapiens mRNA for KIAA1455 protein, partial cds Length = 7698 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 3644 acagtcacagttggcatcatt 3624
>gb|AC079226.7| Homo sapiens BAC clone RP11-18D7 from 4, complete sequence Length = 184032 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 acagtcacagttggcatcatt 365 ||||||||||||||||||||| Sbjct: 117579 acagtcacagttggcatcatt 117559
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 gcggcggcggtggccgtcggc 213 ||||||||||||||||||||| Sbjct: 530670 gcggcggcggtggccgtcggc 530650
>ref|NM_208847.1| Eremothecium gossypii ACR092Cp (ACR092C), mRNA Length = 825 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 tcaggaagcagatcaatgaac 406 ||||||||||||||||||||| Sbjct: 389 tcaggaagcagatcaatgaac 409
>ref|NM_103560.3| Arabidopsis thaliana unknown protein AT1G44790 mRNA, complete cds Length = 931 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cggtggcggcggtggcatca 105 |||||||||||||||||||| Sbjct: 668 cggtggcggcggtggcatca 649
>ref|NM_101793.2| Arabidopsis thaliana unknown protein AT1G19360 mRNA, complete cds Length = 1762 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 460 gctggtccttttggtactgtgaaggctcttagaacaaatccaac 503 |||||||||||||| ||||| ||| ||| ||||| |||||||| Sbjct: 617 gctggtccttttggaactgtcaagagtctgagaactaatccaac 660
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gtcccgcatcgcggcggcgg 202 |||||||||||||||||||| Sbjct: 222825 gtcccgcatcgcggcggcgg 222806
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 cgcggcggcggtggccgtcggcgt 215 ||||||||||||||||| |||||| Sbjct: 77897 cgcggcggcggtggccgccggcgt 77874
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 gcatcgcggcggcggtggccgtcg 211 |||||||||||||| ||||||||| Sbjct: 3223551 gcatcgcggcggcgctggccgtcg 3223528
>gb|BT011909.1| Arabidopsis thaliana At1g44790 mRNA sequence Length = 597 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cggtggcggcggtggcatca 105 |||||||||||||||||||| Sbjct: 583 cggtggcggcggtggcatca 564
>ref|XM_904158.1| PREDICTED: Mus musculus similar to odd Oz/ten-m homolog 4 (LOC630591), mRNA Length = 4791 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 4268 cagtcacagttggcatcatt 4249
>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence Length = 175569 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tttggtactgtgaaggctct 488 |||||||||||||||||||| Sbjct: 50712 tttggtactgtgaaggctct 50693
>gb|AC162370.4| Mus musculus chromosome 7, clone RP23-32F4, complete sequence Length = 225308 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 149657 cagtcacagttggcatcatt 149676
>emb|CR752650.10| Zebrafish DNA sequence from clone CH211-140L3 in linkage group 12, complete sequence Length = 108603 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 attggagagaaaaaatgctg 382 |||||||||||||||||||| Sbjct: 39241 attggagagaaaaaatgctg 39222
>emb|AL136373.21| Human DNA sequence from clone RP11-49P4 on chromosome 1p32.2-33 Contains two novel genes (FLJ40412, FLJ32011), the MKNK1 gene for MAP kinase-interacting serine/threonine kinase 1, the gene for MOB3C protein (MOB3C) and the 3' end of the ATPAF1 gene for ATP synthase mitochondrial F1 complex assembly factor 1, complete sequence Length = 121112 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 gctcttagaacaaatccaac 503 |||||||||||||||||||| Sbjct: 36118 gctcttagaacaaatccaac 36137
>emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 11/17 Length = 349284 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 ggcggcggtggccgtcggcg 214 |||||||||||||||||||| Sbjct: 173553 ggcggcggtggccgtcggcg 173534
>emb|AL807754.8| Zebrafish DNA sequence from clone CH211-197B11 in linkage group 15 Contains the 3' part of the odz4 gene (odd Oz/ten-m homolog 4) and a CpG island, complete sequence Length = 193544 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 126454 cagtcacagttggcatcatt 126435
>emb|CR387926.5| Zebrafish DNA sequence from clone CH211-247J4 in linkage group 15, complete sequence Length = 141283 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 71048 cagtcacagttggcatcatt 71067
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gtcccgcatcgcggcggcgg 202 |||||||||||||||||||| Sbjct: 4158905 gtcccgcatcgcggcggcgg 4158886
>gb|AC099051.2| Homo sapiens chromosome 3 clone RP11-416A9, complete sequence Length = 174372 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 412 atgaagcttcaattggctggacaaggaa 439 ||||||||||| ||||||||||| |||| Sbjct: 35570 atgaagcttcatttggctggacatggaa 35597
>dbj|AK147329.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1014A21 product:odd Oz/ten-m homolog 4 (Drosophila), full insert sequence Length = 10634 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 4929 cagtcacagttggcatcatt 4910
>dbj|AK147579.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1082H18 product:odd Oz/ten-m homolog 4 (Drosophila), full insert sequence Length = 10933 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 5228 cagtcacagttggcatcatt 5209
>ref|XM_690379.1| PREDICTED: Danio rerio similar to odd Oz/ten-m homolog 4 (LOC567091), mRNA Length = 1158 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 662 cagtcacagttggcatcatt 643
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 cggtggcggcggtggcatcacgga 109 |||||||| ||||||||||||||| Sbjct: 3407198 cggtggcgtcggtggcatcacgga 3407175
>gb|AC020616.7| Mus musculus strain C57BL/6J clone RP23-3A24, complete sequence Length = 191243 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tttggtactgtgaaggctct 488 |||||||||||||||||||| Sbjct: 131684 tttggtactgtgaaggctct 131703
>ref|XM_686846.1| PREDICTED: Danio rerio similar to intracellular protein transport like (XM453) (LOC563485), mRNA Length = 2010 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 aggaagcagatcaatgaact 407 |||||||||||||||||||| Sbjct: 1276 aggaagcagatcaatgaact 1295
>gb|AF332442.1| Arabidopsis thaliana clone C00135 unknown protein (At1g44790) mRNA, partial cds Length = 594 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cggtggcggcggtggcatca 105 |||||||||||||||||||| Sbjct: 580 cggtggcggcggtggcatca 561
>gb|AC125768.5| Rattus norvegicus X BAC CH230-211J9 (Children's Hospital Oakland Research Institute) complete sequence Length = 213348 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 ttggtactgtgaaggctctt 489 |||||||||||||||||||| Sbjct: 125550 ttggtactgtgaaggctctt 125531
>gb|AC161265.2| Mus musculus BAC clone RP23-271F18 from chromosome 9, complete sequence Length = 203839 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tgctgacttcaggaagcaga 397 |||||||||||||||||||| Sbjct: 135935 tgctgacttcaggaagcaga 135916
>gb|BT006192.1| Arabidopsis thaliana clone C00135 (K) unknown protein (At1g44790) mRNA, complete cds Length = 600 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cggtggcggcggtggcatca 105 |||||||||||||||||||| Sbjct: 586 cggtggcggcggtggcatca 567
>gb|AC073599.16|AC073599 Mus musculus 7 BAC RP23-8M3 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 226256 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 33826 cagtcacagttggcatcatt 33845
>gb|AC158624.4| Mus musculus BAC RP23-299I16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174188 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tttggtactgtgaaggctct 488 |||||||||||||||||||| Sbjct: 45521 tttggtactgtgaaggctct 45540
>gb|AY826844.1| Isochrysis galbana clone ISCB61 chloroplast cytochrome b6 mRNA, partial cds; nuclear gene for chloroplast product Length = 1010 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ggtggcggcggtggcatcac 106 |||||||||||||||||||| Sbjct: 267 ggtggcggcggtggcatcac 286
>gb|AC159103.1| Mus musculus BAC clone RP23-424O13 from chromosome 14, complete sequence Length = 195391 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tttggtactgtgaaggctct 488 |||||||||||||||||||| Sbjct: 135624 tttggtactgtgaaggctct 135605
>ref|NM_130969.1| Danio rerio odd Oz/ten-m homolog 4 (odz4), mRNA Length = 9264 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 5055 cagtcacagttggcatcatt 5036
>gb|AC123023.4| Homo sapiens 3 BAC RP11-727M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183779 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 412 atgaagcttcaattggctggacaaggaa 439 ||||||||||| ||||||||||| |||| Sbjct: 183750 atgaagcttcatttggctggacatggaa 183777
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 cccgcatcgcggcggcggtggccg 208 |||||||| ||||||||||||||| Sbjct: 6492998 cccgcatcacggcggcggtggccg 6493021
>gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I, complete sequence Length = 120977 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Minus Query: 460 gctggtccttttggtactgtgaaggctcttagaacaaatccaac 503 |||||||||||||| ||||| ||| ||| ||||| |||||||| Sbjct: 24797 gctggtccttttggaactgtcaagagtctgagaactaatccaac 24754
>gb|AY089188.1| Arabidopsis thaliana clone 727 mRNA, complete sequence Length = 807 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cggtggcggcggtggcatca 105 |||||||||||||||||||| Sbjct: 667 cggtggcggcggtggcatca 648
>gb|AY088117.1| Arabidopsis thaliana clone 41461 mRNA, complete sequence Length = 1674 Score = 40.1 bits (20), Expect = 7.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 460 gctggtccttttggtactgtgaaggctcttagaacaaatccaac 503 |||||||||||||| ||||| ||| ||| ||||| |||||||| Sbjct: 573 gctggtccttttggaactgtcaagagtctgagaactaatccaac 616
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 cccgcatcgcggcggcggtggccg 208 |||||||||||||||||| ||||| Sbjct: 3169425 cccgcatcgcggcggcggcggccg 3169448
>gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence Length = 115421 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cggtggcggcggtggcatca 105 |||||||||||||||||||| Sbjct: 25117 cggtggcggcggtggcatca 25136
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gcagcgggcagccgccgtcc 177 |||||||||||||||||||| Sbjct: 8620165 gcagcgggcagccgccgtcc 8620146
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cgcggcggcggtggccgtcg 211 |||||||||||||||||||| Sbjct: 1015909 cgcggcggcggtggccgtcg 1015890
>dbj|AK111111.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A11, full insert sequence Length = 513 Score = 40.1 bits (20), Expect = 7.5 Identities = 53/64 (82%) Strand = Plus / Plus Query: 188 gcatcgcggcggcggtggccgtcggcgttactctcggctgcgtctgcgcgttcctctacc 247 |||||||||||||||| ||||| ||| | ||||||||| | ||| | |||||||||| Sbjct: 132 gcatcgcggcggcggtcgccgttggcatcttgctcggctgcttgtgcaccttcctctacc 191 Query: 248 ccga 251 |||| Sbjct: 192 ccga 195
>dbj|AK100734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117P06, full insert sequence Length = 604 Score = 40.1 bits (20), Expect = 7.5 Identities = 77/96 (80%) Strand = Plus / Plus Query: 181 gggtcccgcatcgcggcggcggtggccgtcggcgttactctcggctgcgtctgcgcgttc 240 ||||| ||||||||||| ||||| ||| ||||||| | ||| | || || || || ||| Sbjct: 82 gggtcgcgcatcgcggccgcggtcgccatcggcgtcgcgctcagttgtgtgtgagccttc 141 Query: 241 ctctaccccgacggcttcatctctcgctccaccgac 276 ||||||||||||| || |||| |||||| ||||| Sbjct: 142 atctaccccgacgggctcctctcccgctcctccgac 177
>gb|AF161186.1|AF161186 Burkholderia pyrrocinia tryptophan halogenase (prnA), PrnB (prnB), PrnC (prnC), and PrnD (prnD) genes, complete cds Length = 6250 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gtcccgcatcgcggcggcgg 202 |||||||||||||||||||| Sbjct: 2449 gtcccgcatcgcggcggcgg 2430
>gb|AF161183.1|AF161183 Burkholderia cepacia tryptophan halogenase (prnA), PrnB (prnB), PrnC (prnC), and PrnD (prnD) genes, complete cds Length = 8931 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gtcccgcatcgcggcggcgg 202 |||||||||||||||||||| Sbjct: 2488 gtcccgcatcgcggcggcgg 2469
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 atctcggtggcggcggtggc 101 |||||||||||||||||||| Sbjct: 3356380 atctcggtggcggcggtggc 3356399
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 cccgcatcgcggcggcggtggccg 208 ||||||||||| |||||||||||| Sbjct: 4633345 cccgcatcgcgtcggcggtggccg 4633368
>gb|AC106950.7| Rattus norvegicus BAC CH230-23G8 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 254341 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 ttggtactgtgaaggctctt 489 |||||||||||||||||||| Sbjct: 11620 ttggtactgtgaaggctctt 11601
>gb|AF059485.1|AF059485 Mus musculus DOC4 (Doc4) mRNA, complete cds Length = 9722 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 5318 cagtcacagttggcatcatt 5299
>ref|NM_011858.1| Mus musculus odd Oz/ten-m homolog 4 (Drosophila) (Odz4), mRNA Length = 9722 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 5318 cagtcacagttggcatcatt 5299
>gb|U74493.1|PFU74493 Pseudomonas fluorescens tryptophan halogenase PrnA (prnA), PrnB (prnB), halogenase PrnC (prnC) and aminopyrrolnitrin oxidase PrnD (prnD) genes, complete cds Length = 6197 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gtcccgcatcgcggcggcgg 202 |||||||||||||||||||| Sbjct: 2257 gtcccgcatcgcggcggcgg 2238
>emb|AL845426.9| Mouse DNA sequence from clone RP23-289M11 on chromosome 2, complete sequence Length = 181434 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tttggtactgtgaaggctct 488 |||||||||||||||||||| Sbjct: 61733 tttggtactgtgaaggctct 61752
>gb|AC162179.2| Mus musculus BAC clone RP23-197K11 from chromosome 9, complete sequence Length = 210741 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tgctgacttcaggaagcaga 397 |||||||||||||||||||| Sbjct: 49750 tgctgacttcaggaagcaga 49731
>dbj|AB026980.1| Danio rerio mRNA for ten-m4, complete cds Length = 9264 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 5055 cagtcacagttggcatcatt 5036
>dbj|AB025413.1| Mus musculus mRNA for Ten-m4, complete cds Length = 8585 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cagtcacagttggcatcatt 365 |||||||||||||||||||| Sbjct: 4761 cagtcacagttggcatcatt 4742 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,317,127 Number of Sequences: 3902068 Number of extensions: 4317127 Number of successful extensions: 104392 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 102288 Number of HSP's gapped (non-prelim): 2099 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)