ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart29a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473024.1| Oryza sativa (japonica cultivar-group), predic... 131 3e-27
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
3emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 92 2e-15
4emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 92 2e-15
5ref|NM_190259.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
7dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
8dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AK073544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
10ref|XM_521064.1| PREDICTED: Pan troglodytes similar to bA119E20.... 44 0.47
11emb|AL359272.9| Human DNA sequence from clone RP11-554P16 on chr... 44 0.47
12emb|AL591854.18| Mouse DNA sequence from clone RP23-105M23 on ch... 44 0.47
13gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 1.9
14emb|AL669837.3| Mouse DNA sequence from clone RP23-219P13 on chr... 42 1.9
15dbj|AK135267.1| Mus musculus 12 days embryo male wolffian duct i... 42 1.9
16dbj|AK030934.1| Mus musculus adult male thymus cDNA, RIKEN full-... 42 1.9
17dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
19emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058... 42 1.9
20gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.9
21gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, comple... 42 1.9
22ref|XM_469925.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
23ref|NM_190243.1| Oryza sativa (japonica cultivar-group), predic... 40 7.3
24gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
25gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, co... 40 7.3
26ref|XM_582851.2| PREDICTED: Bos taurus similar to zinc finger pr... 40 7.3
27gb|AC147228.3| Mus musculus BAC clone RP23-159I8 from chromosome... 40 7.3
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
29gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome... 40 7.3
30gb|AC126681.4| Mus musculus BAC clone RP24-362M8 from chromosome... 40 7.3
31gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 7.3
32gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 40 7.3
33emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.3
34emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 40 7.3
35emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 7.3
36gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 7.3
37dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 7.3
38gb|AC172375.3| Pan troglodytes BAC clone CH251-541M22 from chrom... 40 7.3
39gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 7.3
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
42gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Can... 40 7.3
43gb|AC009312.4| Homo sapiens BAC clone RP11-425F6 from 2, complet... 40 7.3
44gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinosta... 40 7.3
45gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 40 7.3
46dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.3
47dbj|AK106967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
48emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.3
49emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 7.3
50dbj|AB099074.1| Bos taurus mRNA for similar to acidic ribosomal ... 40 7.3
51gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.3
52gb|U59153.1|SAU59153 Streptomyces albus G hsp18 transcription re... 40 7.3
53gb|AC126037.4| Mus musculus BAC clone RP24-223I19 from 14, compl... 40 7.3
54dbj|AB017350.1| Acidiphilium rubrum bchP, bchI, bchD, crtI genes... 40 7.3 
>ref|XM_473024.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score =  131 bits (66), Expect = 3e-27
 Identities = 189/230 (82%)
 Strand = Plus / Plus

                                                                       
Query: 304 ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 363
           |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 148 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 207

                                                                       
Query: 364 atcctcaggtacaagaacacggggacgagccaatggagctacgtgctgtcggcgccggac 423
            ||||  ||||||||||||| ||   |||||||||||||| | | || ||||||||||||
Sbjct: 208 gtcctgcggtacaagaacaccggagagagccaatggagcttcatcctctcggcgccggac 267

                                                                       
Query: 424 aagaggtcctacgtggccgtcgggttctcgggcaaggggggcatggtcggcagcagcgcc 483
           ||| | || |||||||| || |||||||| |||||||||   |||||||| |||||||||
Sbjct: 268 aagggctcgtacgtggcggtggggttctccggcaaggggctgatggtcggtagcagcgcc 327

                                                             
Query: 484 atgctcggctggtcgtcgggcggcaagggcgtcgccaagcagtactacct 533
            |  |||  |||||||||||||| ||||||   |  ||||||||||||||
Sbjct: 328 gtcgtcgcgtggtcgtcgggcgggaagggcacggtgaagcagtactacct 377
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Plus

                                                                            
Query: 372      gtacaagaacacggggacgagccaatggagctacgtgctgtcggcgccggacaagaggtc 431
                |||||||||||| ||   |||||||||||||| | | || ||||||||||||||| | ||
Sbjct: 24742414 gtacaagaacaccggagagagccaatggagcttcatcctctcggcgccggacaagggctc 24742473

                                                                            
Query: 432      ctacgtggccgtcgggttctcgggcaaggggggcatggtcggcagcagcgccatgctcgg 491
                 |||||||| || |||||||| |||||||||   |||||||| ||||||||| |  ||| 
Sbjct: 24742474 gtacgtggcggtggggttctccggcaaggggctgatggtcggtagcagcgccgtcgtcgc 24742533

                                                          
Query: 492      ctggtcgtcgggcggcaagggcgtcgccaagcagtactacct 533
                 |||||||||||||| ||||||   |  ||||||||||||||
Sbjct: 24742534 gtggtcgtcgggcgggaagggcacggtgaagcagtactacct 24742575



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 159      cttggccacttcctcccttccaagcaccgccaatcttgtccga 201
                |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 24741571 cttggccatttcttaccttccaagcaccaccaatcttgtccga 24741613



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 304      ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 363
                |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 24741902 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 24741961

                     
Query: 364      atcct 368
                 ||||
Sbjct: 24741962 gtcct 24741966



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 101      agcatcctctgacctgccaaac 122
                ||||||||||||||||||||||
Sbjct: 24741528 agcatcctctgacctgccaaac 24741549
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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Plus

                                                                          
Query: 372    gtacaagaacacggggacgagccaatggagctacgtgctgtcggcgccggacaagaggtc 431
              |||||||||||| ||   |||||||||||||| | | || ||||||||||||||| | ||
Sbjct: 131937 gtacaagaacaccggagagagccaatggagcttcatcctctcggcgccggacaagggctc 131996

                                                                          
Query: 432    ctacgtggccgtcgggttctcgggcaaggggggcatggtcggcagcagcgccatgctcgg 491
               |||||||| || |||||||| |||||||||   |||||||| ||||||||| |  ||| 
Sbjct: 131997 gtacgtggcggtggggttctccggcaaggggctgatggtcggtagcagcgccgtcgtcgc 132056

                                                        
Query: 492    ctggtcgtcgggcggcaagggcgtcgccaagcagtactacct 533
               |||||||||||||| ||||||   |  ||||||||||||||
Sbjct: 132057 gtggtcgtcgggcgggaagggcacggtgaagcagtactacct 132098



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 159    cttggccacttcctcccttccaagcaccgccaatcttgtccga 201
              |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 131094 cttggccatttcttaccttccaagcaccaccaatcttgtccga 131136



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                          
Query: 304    ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 363
              |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 131425 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 131484

                   
Query: 364    atcct 368
               ||||
Sbjct: 131485 gtcct 131489



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 101    agcatcctctgacctgccaaac 122
              ||||||||||||||||||||||
Sbjct: 131051 agcatcctctgacctgccaaac 131072
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
            complete sequence
          Length = 170765

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 133/162 (82%)
 Strand = Plus / Plus

                                                                        
Query: 372  gtacaagaacacggggacgagccaatggagctacgtgctgtcggcgccggacaagaggtc 431
            |||||||||||| ||   |||||||||||||| | | || ||||||||||||||| | ||
Sbjct: 4130 gtacaagaacaccggagagagccaatggagcttcatcctctcggcgccggacaagggctc 4189

                                                                        
Query: 432  ctacgtggccgtcgggttctcgggcaaggggggcatggtcggcagcagcgccatgctcgg 491
             |||||||| || |||||||| |||||||||   |||||||| ||||||||| |  ||| 
Sbjct: 4190 gtacgtggcggtggggttctccggcaaggggctgatggtcggtagcagcgccgtcgtcgc 4249

                                                      
Query: 492  ctggtcgtcgggcggcaagggcgtcgccaagcagtactacct 533
             |||||||||||||| ||||||   |  ||||||||||||||
Sbjct: 4250 gtggtcgtcgggcgggaagggcacggtgaagcagtactacct 4291



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                       
Query: 159  cttggccacttcctcccttccaagcaccgccaatcttgtccga 201
            |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 3287 cttggccatttcttaccttccaagcaccaccaatcttgtccga 3329



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                        
Query: 304  ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 363
            |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 3618 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 3677

                 
Query: 364  atcct 368
             ||||
Sbjct: 3678 gtcct 3682



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 101  agcatcctctgacctgccaaac 122
            ||||||||||||||||||||||
Sbjct: 3244 agcatcctctgacctgccaaac 3265
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>ref|NM_190259.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2058

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 397 tggagctacgtgctgtcggcgccggacaag 426
           ||||||| ||||||||||||||||||||||
Sbjct: 367 tggagcttcgtgctgtcggcgccggacaag 396
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 397      tggagctacgtgctgtcggcgccggacaag 426
                ||||||| ||||||||||||||||||||||
Sbjct: 38918523 tggagcttcgtgctgtcggcgccggacaag 38918552



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 405      cgtgctgtcggcgccggaca 424
                ||||||||||||||||||||
Sbjct: 38847218 cgtgctgtcggcgccggaca 38847199
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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 397    tggagctacgtgctgtcggcgccggacaag 426
              ||||||| ||||||||||||||||||||||
Sbjct: 191405 tggagcttcgtgctgtcggcgccggacaag 191434



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    cgtgctgtcggcgccggaca 424
              ||||||||||||||||||||
Sbjct: 120100 cgtgctgtcggcgccggaca 120081
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>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696G06
          Length = 142571

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 397   tggagctacgtgctgtcggcgccggacaag 426
             ||||||| ||||||||||||||||||||||
Sbjct: 83309 tggagcttcgtgctgtcggcgccggacaag 83338



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   cgtgctgtcggcgccggaca 424
             ||||||||||||||||||||
Sbjct: 12004 cgtgctgtcggcgccggaca 11985
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>dbj|AK073544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041H18, full
           insert sequence
          Length = 1322

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 397 tggagctacgtgctgtcggcgccggacaag 426
           ||||||| ||||||||||||||||||||||
Sbjct: 209 tggagcttcgtgctgtcggcgccggacaag 238
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>ref|XM_521064.1| PREDICTED: Pan troglodytes similar to bA119E20.1 (KIAA1202 protein)
           (LOC465636), mRNA
          Length = 4572

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 15  ggactctggagggagggagagg 36
           ||||||||||||||||||||||
Sbjct: 726 ggactctggagggagggagagg 705
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>emb|AL359272.9| Human DNA sequence from clone RP11-554P16 on chromosome X Contains the
             5' end of gene KIAA1202 and a CpG island, complete
             sequence
          Length = 173510

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 15    ggactctggagggagggagagg 36
             ||||||||||||||||||||||
Sbjct: 83339 ggactctggagggagggagagg 83360
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>emb|AL591854.18| Mouse DNA sequence from clone RP23-105M23 on chromosome 2, complete
              sequence
          Length = 187181

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 16     gactctggagggagggagagga 37
              ||||||||||||||||||||||
Sbjct: 107788 gactctggagggagggagagga 107809
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 466     atggtcggcagcagcgccatgctcg 490
               ||||||||||||||||||| |||||
Sbjct: 2128896 atggtcggcagcagcgccaggctcg 2128872



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 500     cgggcggcaagggcgtcgcc 519
               ||||||||||||||||||||
Sbjct: 3244393 cgggcggcaagggcgtcgcc 3244412
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>emb|AL669837.3| Mouse DNA sequence from clone RP23-219P13 on chromosome 11 Contains the
             Hus1 gene for Hus1 homolog (S. pombe), the gene for a
             novel protein similar to  sperm associated antigen 4
             (Spag4), a novel gene and a CpG island, complete sequence
          Length = 113836

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   agaattaatctggagcagcca 257
             |||||||||||||||||||||
Sbjct: 52630 agaattaatctggagcagcca 52610
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>dbj|AK135267.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
            region cDNA, RIKEN full-length enriched library,
            clone:6720450A19 product:unclassifiable, full insert
            sequence
          Length = 2562

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 22   ggagggagggagaggatatat 42
            |||||||||||||||||||||
Sbjct: 1573 ggagggagggagaggatatat 1593
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>dbj|AK030934.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830463J03 product:unclassifiable, full
            insert sequence
          Length = 5206

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 22   ggagggagggagaggatatat 42
            |||||||||||||||||||||
Sbjct: 4885 ggagggagggagaggatatat 4905
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 363      catcctcaggtacaagaacac 383
                |||||||||||||||||||||
Sbjct: 24383924 catcctcaggtacaagaacac 24383904
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 363      catcctcaggtacaagaacac 383
                |||||||||||||||||||||
Sbjct: 24312130 catcctcaggtacaagaacac 24312110
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>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103803

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 363   catcctcaggtacaagaacac 383
             |||||||||||||||||||||
Sbjct: 47456 catcctcaggtacaagaacac 47436
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 463     ggcatggtcggcagcagcgcc 483
               |||||||||||||||||||||
Sbjct: 6299644 ggcatggtcggcagcagcgcc 6299664
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>gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, complete sequence
          Length = 220046

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    ggagggagggagaggatatat 42
             |||||||||||||||||||||
Sbjct: 90412 ggagggagggagaggatatat 90432
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>ref|XM_469925.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 320 ccgacgccttccactgcatc 339
           ||||||||||||||||||||
Sbjct: 658 ccgacgccttccactgcatc 639
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>ref|NM_190243.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1680

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 cgtgctgtcggcgccggaca 424
           ||||||||||||||||||||
Sbjct: 300 cgtgctgtcggcgccggaca 319
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>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   ccgacgccttccactgcatc 339
             ||||||||||||||||||||
Sbjct: 51505 ccgacgccttccactgcatc 51486
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>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence
          Length = 185563

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cagcaagcatcctctgacct 115
             ||||||||||||||||||||
Sbjct: 96050 cagcaagcatcctctgacct 96069
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>ref|XM_582851.2| PREDICTED: Bos taurus similar to zinc finger protein 111 (LOC506408),
            mRNA
          Length = 2855

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 503  gcggcaagggcgtcgccaagcagt 526
            ||||||||||| ||||||||||||
Sbjct: 2042 gcggcaagggcttcgccaagcagt 2065
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>gb|AC147228.3| Mus musculus BAC clone RP23-159I8 from chromosome 5, complete sequence
          Length = 186527

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aggatatatgtactccatac 53
             ||||||||||||||||||||
Sbjct: 59615 aggatatatgtactccatac 59634
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 320      ccgacgccttccactgcatc 339
                ||||||||||||||||||||
Sbjct: 32524061 ccgacgccttccactgcatc 32524042
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>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence
          Length = 189088

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cagcaagcatcctctgacct 115
             ||||||||||||||||||||
Sbjct: 64276 cagcaagcatcctctgacct 64257
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>gb|AC126681.4| Mus musculus BAC clone RP24-362M8 from chromosome 5, complete sequence
          Length = 153715

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aggatatatgtactccatac 53
             ||||||||||||||||||||
Sbjct: 12475 aggatatatgtactccatac 12456
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 500     cgggcggcaagggcgtcgcc 519
               ||||||||||||||||||||
Sbjct: 3118402 cgggcggcaagggcgtcgcc 3118421
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>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    cagcaagcatcctctgacct 115
             ||||||||||||||||||||
Sbjct: 32718 cagcaagcatcctctgacct 32699
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   gggcggcaagggcgtcgcca 520
             ||||||||||||||||||||
Sbjct: 92302 gggcggcaagggcgtcgcca 92321
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>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    gggcggcaagggcgtcgcca 520
              ||||||||||||||||||||
Sbjct: 165339 gggcggcaagggcgtcgcca 165358
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   gggcggcaagggcgtcgcca 520
             ||||||||||||||||||||
Sbjct: 69791 gggcggcaagggcgtcgcca 69772
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 501     gggcggcaagggcgtcgcca 520
               ||||||||||||||||||||
Sbjct: 1727502 gggcggcaagggcgtcgcca 1727483
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 501     gggcggcaagggcgtcgcca 520
               ||||||||||||||||||||
Sbjct: 3966863 gggcggcaagggcgtcgcca 3966844
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>gb|AC172375.3| Pan troglodytes BAC clone CH251-541M22 from chromosome unknown, complete
              sequence
          Length = 207989

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tggagggagggagaggatat 40
              ||||||||||||||||||||
Sbjct: 154892 tggagggagggagaggatat 154911
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 501     gggcggcaagggcgtcgcca 520
               ||||||||||||||||||||
Sbjct: 2455287 gggcggcaagggcgtcgcca 2455306
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 320      ccgacgccttccactgcatc 339
                ||||||||||||||||||||
Sbjct: 20629465 ccgacgccttccactgcatc 20629446
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 320      ccgacgccttccactgcatc 339
                ||||||||||||||||||||
Sbjct: 32614571 ccgacgccttccactgcatc 32614552
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>gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161127

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ggggcagcaagcatcctctg 111
             ||||||||||||||||||||
Sbjct: 55377 ggggcagcaagcatcctctg 55396
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>gb|AC009312.4| Homo sapiens BAC clone RP11-425F6 from 2, complete sequence
          Length = 204834

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tggagggagggagaggatat 40
              ||||||||||||||||||||
Sbjct: 146539 tggagggagggagaggatat 146558
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>gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinostaticus neocarzinostatin
             biosynthetic locus, complete sequence
          Length = 92294

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   cgactccgacgccttccact 334
             ||||||||||||||||||||
Sbjct: 77610 cgactccgacgccttccact 77629
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>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   ccgacgccttccactgcatc 339
             ||||||||||||||||||||
Sbjct: 57510 ccgacgccttccactgcatc 57491
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    gggcggcaagggcgtcgcca 520
              ||||||||||||||||||||
Sbjct: 538899 gggcggcaagggcgtcgcca 538918
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>dbj|AK106967.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F12, full
           insert sequence
          Length = 2196

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 ccgacgccttccactgcatc 339
           ||||||||||||||||||||
Sbjct: 561 ccgacgccttccactgcatc 580
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 501    gggcggcaagggcgtcgcca 520
              ||||||||||||||||||||
Sbjct: 441487 gggcggcaagggcgtcgcca 441468
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 405     cgtgctgtcggcgccggaca 424
               ||||||||||||||||||||
Sbjct: 1076748 cgtgctgtcggcgccggaca 1076729
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>dbj|AB099074.1| Bos taurus mRNA for similar to acidic ribosomal phosphoprotein PO,
           partial cds, clone: ORCS13610
          Length = 577

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  agggcagcagcggggcagca 100
           ||||||||||||||||||||
Sbjct: 442 agggcagcagcggggcagca 423
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 501     gggcggcaagggcgtcgcca 520
               ||||||||||||||||||||
Sbjct: 3989932 gggcggcaagggcgtcgcca 3989913



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 410     tgtcggcgccggacaagagg 429
               ||||||||||||||||||||
Sbjct: 2540025 tgtcggcgccggacaagagg 2540044
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>gb|U59153.1|SAU59153 Streptomyces albus G hsp18 transcription regulator gene, complete
           cds
          Length = 1020

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 cctccccgtcgcccgcctcg 307
           ||||||||||||||||||||
Sbjct: 688 cctccccgtcgcccgcctcg 707
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>gb|AC126037.4| Mus musculus BAC clone RP24-223I19 from 14, complete sequence
          Length = 189127

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    cctggactctggagggagggagag 35
             ||||||| ||||||||||||||||
Sbjct: 65756 cctggaccctggagggagggagag 65779
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>dbj|AB017350.1| Acidiphilium rubrum bchP, bchI, bchD, crtI genes and 2 ORFs,
           partial and complete cds
          Length = 4965

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 464 gcatggtcggcagcagcgcc 483
           ||||||||||||||||||||
Sbjct: 827 gcatggtcggcagcagcgcc 808


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,908,056
Number of Sequences: 3902068
Number of extensions: 3908056
Number of successful extensions: 98767
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97689
Number of HSP's gapped (non-prelim): 1078
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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