>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D) (EB11)
          Length = 1336

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 18   RRRKKSSGAAVPPVTPQSTTVASLRFCPRSCFAQDAALSRNSYCNCKFSAIWIP 179
            R R+ + G  +PP  P S ++  L  CPR+  A+           C  +A W P
Sbjct: 1252 RHRRAAGGWDLPPPAPTSRSLEDLSSCPRAAPARRLTGPSRHARRCPHAAHWGP 1305

>SYS_PROMP (Q7V0R7) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 424

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 211 LSVSSKQAF-LKLWAPALRCDKKIPPLRACFDFSARAVSSSLAKYDSVPS 357
           L  SS + F L++W P+ +C ++I     C DF AR  SS   K D   S
Sbjct: 328 LGFSSSRTFDLEVWLPSSQCYREISSCSNCLDFQARR-SSIRTKIDKKTS 376

>MOAA_CAUCR (Q9AC48) Molybdenum cofactor biosynthesis protein A|
          Length = 349

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 515 CTTCGRTQMLCTSFIHTC 568
           C TC R ++ CT  +HTC
Sbjct: 275 CDTCNRVRLTCTGTLHTC 292

>NUHM_NEUCR (P40915) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 263

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 280 PPLRACFDFSARAVSSSLAKYDSVPSNNP 366
           P  RAC   SAR  S +L  + + P NNP
Sbjct: 29  PVSRACLSISARRPSDTLMVHRNTPDNNP 57

>URAA_PASMU (Q9CPL9) Probable uracil permease (Uracil transporter)|
          Length = 417

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +1

Query: 91  DFVQDPALHRMLPCQGIATATANSQLFGFPAT 186
           DF+Q P LHR L   GIAT+ A S L G P T
Sbjct: 255 DFLQKPGLHRTLLGDGIATSAA-SFLGGPPNT 285

>ACV1B_RAT (P80202) Activin receptor type 1B precursor (EC 2.7.11.30)|
           (ACTR-IB) (Serine/threonine-protein kinase receptor R2)
           (SKR2)
          Length = 505

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 470 NGGGGPWHVYLIFCHCTTCGRTQMLC 547
           +GG GP  +  + C CT+C +T   C
Sbjct: 21  SGGSGPRGIQALLCACTSCLQTNYTC 46

>ACV1B_MOUSE (Q61271) Activin receptor type 1B precursor (EC 2.7.11.30)|
           (ACTR-IB) (Serine/threonine-protein kinase receptor R2)
           (SKR2)
          Length = 505

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 470 NGGGGPWHVYLIFCHCTTCGRTQMLC 547
           +GG GP  +  + C CT+C +T   C
Sbjct: 21  SGGSGPRGIQALLCACTSCLQTNYTC 46

>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 18   RRRKKSSGAAVPPVTPQSTTVASLRFCPRSCFAQDAALSRNSYCNCKFSAIWIP 179
            R R+ + G  +PP  P S ++  L  CPR+   +           C  +A W P
Sbjct: 1239 RHRRAAGGWDLPPPAPTSRSLEDLSSCPRAAPTRRLTGPSRHARRCPHAAHWGP 1292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,965,788
Number of Sequences: 219361
Number of extensions: 1611973
Number of successful extensions: 4787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4787
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)