ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28h12 |
|---|---|
| Clone Library Name | barley_pub |
>C74A1_ORYSA (Q7Y0C8) Cytochrome P450 74A1, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase 1) (Hydroperoxide dehydrase 1) Length = 512 Score = 41.2 bits (95), Expect(2) = 2e-07 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = +2 Query: 281 HGPPVLGALKDRLEYFYGPG 340 +GPPV+GA++DR EYFYGPG Sbjct: 54 YGPPVVGAIRDRYEYFYGPG 73 Score = 31.2 bits (69), Expect(2) = 2e-07 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = +1 Query: 127 MATAVHQLSFSAPXXXXXXXXXXXXXXXXXXXX--HEVLSPKRRLPLPKV 270 MATA +SF++P EV+SPKRRLPL KV Sbjct: 1 MATAAACISFASPSPARVVIRRQTRASASASATDRQEVVSPKRRLPLRKV 50
>C74A2_PARAR (Q40778) Cytochrome P450 74A2 (EC 4.2.1.92) (Allene oxide synthase)| (Rubber particle protein) (RPP) Length = 473 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +2 Query: 281 HGPPVLGALKDRLEYFYGPG 340 +G P +KDRLEYFYG G Sbjct: 15 YGIPFFQPIKDRLEYFYGTG 34
>PLCC_PONPY (Q5RA57) 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (EC| 2.3.1.51) (1-AGP acyltransferase 3) (1-AGPAT 3) (Lysophosphatidic acid acyltransferase-gamma) (LPAAT-gamma) (1-acylglycerol-3-phosphate O-acyltransferase 3) Length = 376 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/50 (40%), Positives = 25/50 (50%) Frame = +3 Query: 54 PWTLLNYSSCSTSLPSVALARITANGDGGPPALLLRAERGHQTAADAGVR 203 PWTLLN+ S +T L S + + G P L+L G AA GVR Sbjct: 305 PWTLLNFLSWATILLSPLFSFVLGVFASGSPLLIL-TFLGFVGAASFGVR 353
>PLCC_HUMAN (Q9NRZ7) 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (EC| 2.3.1.51) (1-AGP acyltransferase 3) (1-AGPAT 3) (Lysophosphatidic acid acyltransferase-gamma) (LPAAT-gamma) (1-acylglycerol-3-phosphate O-acyltransferase 3) Length = 376 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/50 (40%), Positives = 25/50 (50%) Frame = +3 Query: 54 PWTLLNYSSCSTSLPSVALARITANGDGGPPALLLRAERGHQTAADAGVR 203 PWTLLN+ S +T L S + + G P L+L G AA GVR Sbjct: 305 PWTLLNFLSWATILLSPLFSFVLGVFASGSPLLIL-TFLGFVGAASFGVR 353
>CP74A_ARATH (Q96242) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 518 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +2 Query: 281 HGPPVLGALKDRLEYFYGPG 340 +G P++G +KDR +YFY G Sbjct: 61 YGLPIVGPIKDRWDYFYDQG 80
>GCY8E_DROME (Q8INF0) Soluble guanylate cyclase 88E (EC 4.6.1.2)| Length = 947 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +3 Query: 6 LPRVPALHTAHHHQQPPWTLLNYSSCSTSLPSVALARITANGDGGPPA 149 L A H + HHQ L +S +LPSVA A GG P+ Sbjct: 670 LTAAAAAHMSLHHQAVVAEALTGASVEVALPSVASGATGAAAGGGAPS 717
>ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodomain protein 2)| Length = 3005 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +3 Query: 6 LPRVPALHTAHHHQQPPWTLLNYSSCSTS 92 L + A HHQQPP YS CS++ Sbjct: 2424 LQQAAAQQQQQHHQQPPTKKRKYSDCSSN 2452
>CU058_HUMAN (P58505) Protein C21orf58| Length = 239 Score = 28.1 bits (61), Expect = 5.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +3 Query: 9 PRVPALHTAHHHQQPPW 59 PR+PA+H HHH W Sbjct: 203 PRLPAVHHHHHHHHAVW 219
>CP74_LINUS (P48417) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 536 Score = 28.1 bits (61), Expect = 5.6 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +2 Query: 281 HGPPVLGALKDRLEYFYGPG 340 +G P +G ++DRL+YFY G Sbjct: 79 YGLPGIGPIQDRLDYFYNQG 98
>KIRR1_HUMAN (Q96J84) Kin of IRRE-like protein 1 precursor (Kin of irregular| chiasm-like protein 1) (Nephrin-like protein 1) Length = 757 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -1 Query: 224 RSVAEADADARVCRRLVPALG-AEKE 150 +SV +ADA CR +VP +G AE+E Sbjct: 359 KSVTQADAGTYTCRAIVPRIGVAERE 384
>VGLM_BHV1C (P52370) Glycoprotein M| Length = 411 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 324 YSRRSLSAPSTGGPWLARHLGQRQPPL 244 Y+ R+LSA GG W R LG R P L Sbjct: 53 YNARNLSAD--GGAWAQRELGARHPAL 77
>LPXK_VIBVY (Q7MJ08) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 335 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +3 Query: 75 SSCSTSLPSVALARITANGDGGPPALLLRAERGHQTAADAGV 200 +S S+P + + ITA G+G P ++ E+ Q GV Sbjct: 44 ASFQASIPVIVVGNITAGGNGKTPVVIWLVEKLQQLGFKPGV 85
>LPXK_VIBVU (Q8DAV1) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 335 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +3 Query: 75 SSCSTSLPSVALARITANGDGGPPALLLRAERGHQTAADAGV 200 +S S+P + + ITA G+G P ++ E+ Q GV Sbjct: 44 ASFQASIPVIVVGNITAGGNGKTPVVIWLVEKLQQLGFKPGV 85
>KIRR1_RAT (Q6X936) Kin of IRRE-like protein 1 precursor (Kin of irregular| chiasm-like protein 1) (Nephrin-like protein 1) Length = 789 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -1 Query: 224 RSVAEADADARVCRRLVPALG-AEKE 150 +SV +ADA CR +VP +G AE+E Sbjct: 391 KSVTQADAGTYTCRAIVPRIGVAERE 416
>KIRR1_MOUSE (Q80W68) Kin of IRRE-like protein 1 precursor (Kin of irregular| chiasm-like protein 1) (Nephrin-like protein 1) Length = 789 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -1 Query: 224 RSVAEADADARVCRRLVPALG-AEKE 150 +SV +ADA CR +VP +G AE+E Sbjct: 391 KSVTQADAGTYTCRAIVPRIGVAERE 416
>ALG10_USTMA (Q4P2W6) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase ALG10) (Dolichyl-phosphoglucose-dependent glucosyltransferase ALG10) (Asparagine-linked glycosylation protein 10) Length = 633 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -1 Query: 170 ALGAEKESWWTAVAICCDP 114 A G K+ WWTAVAI P Sbjct: 334 AFGDNKKGWWTAVAINAAP 352
>DNL4_MOUSE (Q8BTF7) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)| (Polydeoxyribonucleotide synthase [ATP] 4) Length = 911 Score = 27.3 bits (59), Expect = 9.6 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = -1 Query: 68 EQSPRRLLVVVCGVQCRYSW 9 +Q+P + V+ ++CRYSW Sbjct: 786 QQTPEEMAPVIADLECRYSW 805
>RT26_RAT (Q9EPJ3) 28S ribosomal protein S26, mitochondrial precursor| (MRP-S26) (5'OT-EST protein) Length = 200 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 105 ALARITANGDGGPPALLLRAERGHQTAAD 191 AL R+ A G PP LLL RG +T D Sbjct: 4 ALNRLAARPGGQPPTLLLLPVRGRKTRHD 32
>PLCC_MOUSE (Q9D517) 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (EC| 2.3.1.51) (1-AGP acyltransferase 3) (1-AGPAT 3) (Lysophosphatidic acid acyltransferase-gamma) (LPAAT-gamma) (1-acylglycerol-3-phosphate O-acyltransferase 3) Length = 376 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = +3 Query: 54 PWTLLNYSSCSTSLPSVALARITANGDGGPPALLLRAERGHQTAADAGVR 203 PWTLLN+ +T L S + + G P L+L G AA GVR Sbjct: 305 PWTLLNFLCWATILLSPLFSFVLGVFASGSPLLIL-TFLGFVGAASFGVR 353 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,117,692 Number of Sequences: 219361 Number of extensions: 614482 Number of successful extensions: 2139 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2084 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2131 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
