ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28g12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009621.1| Triticum aestivum clone wre1n.pk0134.h7:fis, full insert mRNA sequence Length = 1608 Score = 860 bits (434), Expect = 0.0 Identities = 479/494 (96%) Strand = Plus / Plus Query: 45 ttcctccccagcgcaccacctcgccgcagcggagccgagcccgatgccgcccaaggcgtc 104 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 ttcctccccagcacaccccctcgccgcagcggagccgagcccgatgccgcccaaggcgtc 131 Query: 105 gaagaaggacgccgagccggcggagcgccccatcctcggccgcttctcctcccacctcaa 164 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 132 gaagaaggacggcgagccggcggagcgccccatcctcggccgcttctcctcgcacctcaa 191 Query: 165 gatcggaatcgtcgggttacccaatgttggcaaatcaactttcttcaacatagtaacgaa 224 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 192 gatcggaatcgttgggttacccaatgttggcaaatcaactttcttcaacatagtaacaaa 251 Query: 225 gttgtccattccggccgagaacttcccattctgtaccattgaaccaaatgaggcacgggt 284 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 gttgtccatcccggctgagaacttcccattctgtaccattgaaccaaatgaggcacgggt 311 Query: 285 gcatgttccggacgaacgatttgactggctttgccaacttttcaagccaaagagtgaggt 344 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 312 acatgttccggatgaacgatttgactatctttgccaacttttcaagccaaagagtgaggt 371 Query: 345 ggctgcatatctggaaatcaacgacatagccggtcttgttagaggagcaagtgcagggga 404 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 372 ggctgcatatctggaaatcaacgacatagccgggcttgttagaggagcaagtgcagggga 431 Query: 405 gggtctgggcaatgccttcttatcccatatacgtgctgttgatggaatctttcatgtctt 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 gggtctgggcaatgccttcttatcccatatacgtgctgttgatggaatctttcatgtctt 491 Query: 465 gagagcatttgaagacaaggaaatcactcatattgatgatacagttgatcctgttcgtga 524 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 492 gagagcatttgaagacacggaaatcacccatattgatgatacagttgatcctgttcgtga 551 Query: 525 tttggaaactatta 538 |||||||||||||| Sbjct: 552 tttggaaactatta 565
>dbj|AK062256.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G08, full insert sequence Length = 1599 Score = 523 bits (264), Expect = e-145 Identities = 405/452 (89%) Strand = Plus / Plus Query: 86 cgatgccgcccaaggcgtcgaagaaggacgccgagccggcggagcgccccatcctcggcc 145 ||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct: 110 cgatgccgcccaaggcgtccaagaaggacgccgcccccgccgagcgccccatcctcggcc 169 Query: 146 gcttctcctcccacctcaagatcggaatcgtcgggttacccaatgttggcaaatcaactt 205 ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 170 gcttctcctcccacctcaagatcgggatcgttgggttaccaaatgttggcaaatccactt 229 Query: 206 tcttcaacatagtaacgaagttgtccattccggccgagaacttcccattctgtaccattg 265 |||||||||||||||| ||| |||| || || || ||||||||||| ||||||||||| | Sbjct: 230 tcttcaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcg 289 Query: 266 aaccaaatgaggcacgggtgcatgttccggacgaacgatttgactggctttgccaacttt 325 | ||||||||||||||||| ||||||| || || ||||||| |||||||| ||||||| Sbjct: 290 acccaaatgaggcacgggtatatgttccagatgagagatttgattggctttgtcaacttt 349 Query: 326 tcaagccaaagagtgaggtggctgcatatctggaaatcaacgacatagccggtcttgtta 385 ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 350 acaagccaaagagtgaggtgtctgcatatctagaaatcaatgacatagccgggcttgtta 409 Query: 386 gaggagcaagtgcaggggagggtctgggcaatgccttcttatcccatatacgtgctgttg 445 ||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||||||| Sbjct: 410 gaggagcccatgctggggagggtttgggcaatgccttcctatcccatatacgcgctgttg 469 Query: 446 atggaatctttcatgtcttgagagcatttgaagacaaggaaatcactcatattgatgata 505 ||||||| |||||||| |||||||||||||||||||| ||| | ||||||||||||||| Sbjct: 470 atggaatttttcatgtattgagagcatttgaagacaaagaagttactcatattgatgatt 529 Query: 506 cagttgatcctgttcgtgatttggaaactatt 537 |||| ||||||||| | ||||||||||||||| Sbjct: 530 cagtggatcctgttagagatttggaaactatt 561
>ref|XM_480550.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1533 Score = 515 bits (260), Expect = e-143 Identities = 404/452 (89%) Strand = Plus / Plus Query: 86 cgatgccgcccaaggcgtcgaagaaggacgccgagccggcggagcgccccatcctcggcc 145 ||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct: 88 cgatgccgcccaaggcgtccaagaaggacgccgcccccgccgagcgccccatcctcggcc 147 Query: 146 gcttctcctcccacctcaagatcggaatcgtcgggttacccaatgttggcaaatcaactt 205 ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 148 gcttctcctcccacctcaagatcgggatcgttgggttaccaaatgttggcaaatccactt 207 Query: 206 tcttcaacatagtaacgaagttgtccattccggccgagaacttcccattctgtaccattg 265 |||| ||||||||||| ||| |||| || || || ||||||||||| ||||||||||| | Sbjct: 208 tctttaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcg 267 Query: 266 aaccaaatgaggcacgggtgcatgttccggacgaacgatttgactggctttgccaacttt 325 | ||||||||||||||||| ||||||| || || ||||||| |||||||| ||||||| Sbjct: 268 acccaaatgaggcacgggtatatgttccagatgagagatttgattggctttgtcaacttt 327 Query: 326 tcaagccaaagagtgaggtggctgcatatctggaaatcaacgacatagccggtcttgtta 385 ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 328 acaagccaaagagtgaggtgtctgcatatctagaaatcaatgacatagccgggcttgtta 387 Query: 386 gaggagcaagtgcaggggagggtctgggcaatgccttcttatcccatatacgtgctgttg 445 ||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||||||| Sbjct: 388 gaggagcccatgctggggagggtttgggcaatgccttcctatcccatatacgcgctgttg 447 Query: 446 atggaatctttcatgtcttgagagcatttgaagacaaggaaatcactcatattgatgata 505 ||||||| |||||||| |||||||||||||||||||| ||| | ||||||||||||||| Sbjct: 448 atggaatttttcatgtattgagagcatttgaagacaaagaagttactcatattgatgatt 507 Query: 506 cagttgatcctgttcgtgatttggaaactatt 537 |||| ||||||||| | ||||||||||||||| Sbjct: 508 cagtggatcctgttagagatttggaaactatt 539
>ref|XM_507572.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0094P23.28 mRNA Length = 1594 Score = 515 bits (260), Expect = e-143 Identities = 404/452 (89%) Strand = Plus / Plus Query: 86 cgatgccgcccaaggcgtcgaagaaggacgccgagccggcggagcgccccatcctcggcc 145 ||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct: 105 cgatgccgcccaaggcgtccaagaaggacgccgcccccgccgagcgccccatcctcggcc 164 Query: 146 gcttctcctcccacctcaagatcggaatcgtcgggttacccaatgttggcaaatcaactt 205 ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 165 gcttctcctcccacctcaagatcgggatcgttgggttaccaaatgttggcaaatccactt 224 Query: 206 tcttcaacatagtaacgaagttgtccattccggccgagaacttcccattctgtaccattg 265 |||| ||||||||||| ||| |||| || || || ||||||||||| ||||||||||| | Sbjct: 225 tctttaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcg 284 Query: 266 aaccaaatgaggcacgggtgcatgttccggacgaacgatttgactggctttgccaacttt 325 | ||||||||||||||||| ||||||| || || ||||||| |||||||| ||||||| Sbjct: 285 acccaaatgaggcacgggtatatgttccagatgagagatttgattggctttgtcaacttt 344 Query: 326 tcaagccaaagagtgaggtggctgcatatctggaaatcaacgacatagccggtcttgtta 385 ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 345 acaagccaaagagtgaggtgtctgcatatctagaaatcaatgacatagccgggcttgtta 404 Query: 386 gaggagcaagtgcaggggagggtctgggcaatgccttcttatcccatatacgtgctgttg 445 ||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||||||| Sbjct: 405 gaggagcccatgctggggagggtttgggcaatgccttcctatcccatatacgcgctgttg 464 Query: 446 atggaatctttcatgtcttgagagcatttgaagacaaggaaatcactcatattgatgata 505 ||||||| |||||||| |||||||||||||||||||| ||| | ||||||||||||||| Sbjct: 465 atggaatttttcatgtattgagagcatttgaagacaaagaagttactcatattgatgatt 524 Query: 506 cagttgatcctgttcgtgatttggaaactatt 537 |||| ||||||||| | ||||||||||||||| Sbjct: 525 cagtggatcctgttagagatttggaaactatt 556
>ref|XM_507162.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0094P23.28 mRNA Length = 1551 Score = 515 bits (260), Expect = e-143 Identities = 404/452 (89%) Strand = Plus / Plus Query: 86 cgatgccgcccaaggcgtcgaagaaggacgccgagccggcggagcgccccatcctcggcc 145 ||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct: 106 cgatgccgcccaaggcgtccaagaaggacgccgcccccgccgagcgccccatcctcggcc 165 Query: 146 gcttctcctcccacctcaagatcggaatcgtcgggttacccaatgttggcaaatcaactt 205 ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 166 gcttctcctcccacctcaagatcgggatcgttgggttaccaaatgttggcaaatccactt 225 Query: 206 tcttcaacatagtaacgaagttgtccattccggccgagaacttcccattctgtaccattg 265 |||| ||||||||||| ||| |||| || || || ||||||||||| ||||||||||| | Sbjct: 226 tctttaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcg 285 Query: 266 aaccaaatgaggcacgggtgcatgttccggacgaacgatttgactggctttgccaacttt 325 | ||||||||||||||||| ||||||| || || ||||||| |||||||| ||||||| Sbjct: 286 acccaaatgaggcacgggtatatgttccagatgagagatttgattggctttgtcaacttt 345 Query: 326 tcaagccaaagagtgaggtggctgcatatctggaaatcaacgacatagccggtcttgtta 385 ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 346 acaagccaaagagtgaggtgtctgcatatctagaaatcaatgacatagccgggcttgtta 405 Query: 386 gaggagcaagtgcaggggagggtctgggcaatgccttcttatcccatatacgtgctgttg 445 ||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||||||| Sbjct: 406 gaggagcccatgctggggagggtttgggcaatgccttcctatcccatatacgcgctgttg 465 Query: 446 atggaatctttcatgtcttgagagcatttgaagacaaggaaatcactcatattgatgata 505 ||||||| |||||||| |||||||||||||||||||| ||| | ||||||||||||||| Sbjct: 466 atggaatttttcatgtattgagagcatttgaagacaaagaagttactcatattgatgatt 525 Query: 506 cagttgatcctgttcgtgatttggaaactatt 537 |||| ||||||||| | ||||||||||||||| Sbjct: 526 cagtggatcctgttagagatttggaaactatt 557
>dbj|AK121741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085L09, full insert sequence Length = 1551 Score = 515 bits (260), Expect = e-143 Identities = 404/452 (89%) Strand = Plus / Plus Query: 86 cgatgccgcccaaggcgtcgaagaaggacgccgagccggcggagcgccccatcctcggcc 145 ||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct: 106 cgatgccgcccaaggcgtccaagaaggacgccgcccccgccgagcgccccatcctcggcc 165 Query: 146 gcttctcctcccacctcaagatcggaatcgtcgggttacccaatgttggcaaatcaactt 205 ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 166 gcttctcctcccacctcaagatcgggatcgttgggttaccaaatgttggcaaatccactt 225 Query: 206 tcttcaacatagtaacgaagttgtccattccggccgagaacttcccattctgtaccattg 265 |||| ||||||||||| ||| |||| || || || ||||||||||| ||||||||||| | Sbjct: 226 tctttaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcg 285 Query: 266 aaccaaatgaggcacgggtgcatgttccggacgaacgatttgactggctttgccaacttt 325 | ||||||||||||||||| ||||||| || || ||||||| |||||||| ||||||| Sbjct: 286 acccaaatgaggcacgggtatatgttccagatgagagatttgattggctttgtcaacttt 345 Query: 326 tcaagccaaagagtgaggtggctgcatatctggaaatcaacgacatagccggtcttgtta 385 ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 346 acaagccaaagagtgaggtgtctgcatatctagaaatcaatgacatagccgggcttgtta 405 Query: 386 gaggagcaagtgcaggggagggtctgggcaatgccttcttatcccatatacgtgctgttg 445 ||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||||||| Sbjct: 406 gaggagcccatgctggggagggtttgggcaatgccttcctatcccatatacgcgctgttg 465 Query: 446 atggaatctttcatgtcttgagagcatttgaagacaaggaaatcactcatattgatgata 505 ||||||| |||||||| |||||||||||||||||||| ||| | ||||||||||||||| Sbjct: 466 atggaatttttcatgtattgagagcatttgaagacaaagaagttactcatattgatgatt 525 Query: 506 cagttgatcctgttcgtgatttggaaactatt 537 |||| ||||||||| | ||||||||||||||| Sbjct: 526 cagtggatcctgttagagatttggaaactatt 557
>dbj|AK098917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L20, full insert sequence Length = 1533 Score = 515 bits (260), Expect = e-143 Identities = 404/452 (89%) Strand = Plus / Plus Query: 86 cgatgccgcccaaggcgtcgaagaaggacgccgagccggcggagcgccccatcctcggcc 145 ||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct: 88 cgatgccgcccaaggcgtccaagaaggacgccgcccccgccgagcgccccatcctcggcc 147 Query: 146 gcttctcctcccacctcaagatcggaatcgtcgggttacccaatgttggcaaatcaactt 205 ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 148 gcttctcctcccacctcaagatcgggatcgttgggttaccaaatgttggcaaatccactt 207 Query: 206 tcttcaacatagtaacgaagttgtccattccggccgagaacttcccattctgtaccattg 265 |||| ||||||||||| ||| |||| || || || ||||||||||| ||||||||||| | Sbjct: 208 tctttaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcg 267 Query: 266 aaccaaatgaggcacgggtgcatgttccggacgaacgatttgactggctttgccaacttt 325 | ||||||||||||||||| ||||||| || || ||||||| |||||||| ||||||| Sbjct: 268 acccaaatgaggcacgggtatatgttccagatgagagatttgattggctttgtcaacttt 327 Query: 326 tcaagccaaagagtgaggtggctgcatatctggaaatcaacgacatagccggtcttgtta 385 ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| Sbjct: 328 acaagccaaagagtgaggtgtctgcatatctagaaatcaatgacatagccgggcttgtta 387 Query: 386 gaggagcaagtgcaggggagggtctgggcaatgccttcttatcccatatacgtgctgttg 445 ||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||||||| Sbjct: 388 gaggagcccatgctggggagggtttgggcaatgccttcctatcccatatacgcgctgttg 447 Query: 446 atggaatctttcatgtcttgagagcatttgaagacaaggaaatcactcatattgatgata 505 ||||||| |||||||| |||||||||||||||||||| ||| | ||||||||||||||| Sbjct: 448 atggaatttttcatgtattgagagcatttgaagacaaagaagttactcatattgatgatt 507 Query: 506 cagttgatcctgttcgtgatttggaaactatt 537 |||| ||||||||| | ||||||||||||||| Sbjct: 508 cagtggatcctgttagagatttggaaactatt 539
>gb|AY105761.1| Zea mays PCO136937 mRNA sequence Length = 1586 Score = 365 bits (184), Expect = 1e-97 Identities = 374/436 (85%), Gaps = 1/436 (0%) Strand = Plus / Plus Query: 106 aagaaggacgccgagccggcggagcgccccatcctcggccgcttctcctcccacctcaag 165 ||||||||||| | |||| | |||||||||||||| || ||||||||||||||||||||| Sbjct: 158 aagaaggacgctgcgccgtctgagcgccccatccttggacgcttctcctcccacctcaag 217 Query: 166 atcggaatcgtcgggttacccaatgttggcaaatcaactttctt-caacatagtaacgaa 224 ||||| ||||| ||||| || |||||||||||||||||||| || ||||||||||||||| Sbjct: 218 atcgggatcgttgggttgccaaatgttggcaaatcaactttttttcaacatagtaacgaa 277 Query: 225 gttgtccattccggccgagaacttcccattctgtaccattgaaccaaatgaggcacgggt 284 |||| | || || || ||||| || || ||||||||||| ||||||||||| |||||||| Sbjct: 278 gttggctatcccagctgagaattttcctttctgtaccatcgaaccaaatgaagcacgggt 337 Query: 285 gcatgttccggacgaacgatttgactggctttgccaacttttcaagccaaagagtgaggt 344 | ||||||| || ||||| ||||| ||||||||| |||||| |||||||||||||||||| Sbjct: 338 gaatgttccagatgaacggtttgattggctttgcaaactttacaagccaaagagtgaggt 397 Query: 345 ggctgcatatctggaaatcaacgacatagccggtcttgttagaggagcaagtgcagggga 404 | |||||||||| ||| | | |||||||| || ||| ||||||| || ||| ||||| Sbjct: 398 gcctgcatatcttgaagtaactgacatagctgggcttattagaggtgctcatgctgggga 457 Query: 405 gggtctgggcaatgccttcttatcccatatacgtgctgttgatggaatctttcatgtctt 464 |||||||||||||| ||| | || |||||||||||||||||||||||||| |||||| | Sbjct: 458 tggtctgggcaatgcattcctctcacatatacgtgctgttgatggaatcttccatgtcct 517 Query: 465 gagagcatttgaagacaaggaaatcactcatattgatgatacagttgatcctgttcgtga 524 ||||||||||||||| ||||| |||||| |||| |||||||| ||||||||| | || Sbjct: 518 aagagcatttgaagacgcagaaattactcatgttgacgatacagtagatcctgttagaga 577 Query: 525 tttggaaactattagt 540 |||||||||||||| Sbjct: 578 catggaaactattagt 593
>gb|AY135021.1| Triticum aestivum GTP-binding protein mRNA, complete cds Length = 1143 Score = 299 bits (151), Expect = 5e-78 Identities = 154/155 (99%) Strand = Plus / Plus Query: 388 ggagcaagtgcaggggagggtctgggcaatgccttcttatcccatatacgtgctgttgat 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ggagcaagtgcaggggagggtctgggcaatgccttcttatcccatatacgtgctgttgat 60 Query: 448 ggaatctttcatgtcttgagagcatttgaagacaaggaaatcactcatattgatgataca 507 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 61 ggaatctttcatgtcttgagagcatttgaagacacggaaatcactcatattgatgataca 120 Query: 508 gttgatcctgttcgtgatttggaaactattagtca 542 ||||||||||||||||||||||||||||||||||| Sbjct: 121 gttgatcctgttcgtgatttggaaactattagtca 155
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 165 bits (83), Expect = 2e-37 Identities = 146/167 (87%) Strand = Plus / Plus Query: 178 gggttacccaatgttggcaaatcaactttcttcaacatagtaacgaagttgtccattccg 237 |||||||| |||||||||||||| |||||||| ||||||||||| ||| |||| || || Sbjct: 5741494 gggttaccaaatgttggcaaatccactttctttaacatagtaacaaagctgtctatccca 5741553 Query: 238 gccgagaacttcccattctgtaccattgaaccaaatgaggcacgggtgcatgttccggac 297 || ||||||||||| ||||||||||| || ||||||||||||||||| ||||||| || Sbjct: 5741554 gctgagaacttccctttctgtaccatcgacccaaatgaggcacgggtatatgttccagat 5741613 Query: 298 gaacgatttgactggctttgccaacttttcaagccaaagagtgaggt 344 || ||||||| |||||||| ||||||| |||||||||||||||||| Sbjct: 5741614 gagagatttgattggctttgtcaactttacaagccaaagagtgaggt 5741660 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Plus Query: 341 aggtggctgcatatctggaaatcaacgacatagccggtcttgttagaggagcaagtgcag 400 ||||| |||||||||| |||||||| ||||||||||| |||||||||||||| ||| | Sbjct: 5741739 aggtgtctgcatatctagaaatcaatgacatagccgggcttgttagaggagcccatgctg 5741798 Query: 401 gggagggtctgggcaatgccttcttatcccatatacgtgctgttgatggaatctttcatg 460 |||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||| Sbjct: 5741799 gggagggtttgggcaatgccttcctatcccatatacgcgctgttgatggaatttttcatg 5741858 Query: 461 tcttgag 467 | ||||| Sbjct: 5741859 tattgag 5741865 Score = 133 bits (67), Expect = 7e-28 Identities = 85/91 (93%) Strand = Plus / Plus Query: 86 cgatgccgcccaaggcgtcgaagaaggacgccgagccggcggagcgccccatcctcggcc 145 ||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct: 5740498 cgatgccgcccaaggcgtccaagaaggacgccgcccccgccgagcgccccatcctcggcc 5740557 Query: 146 gcttctcctcccacctcaagatcggaatcgt 176 ||||||||||||||||||||||||| ||||| Sbjct: 5740558 gcttctcctcccacctcaagatcgggatcgt 5740588 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 467 gagcatttgaagacaaggaaatcactcatattgatgatacagttgatcctgttcgtgatt 526 |||||||||||||||| ||| | ||||||||||||||| |||| ||||||||| | |||| Sbjct: 5742078 gagcatttgaagacaaagaagttactcatattgatgattcagtggatcctgttagagatt 5742137 Query: 527 tggaaactatt 537 ||||||||||| Sbjct: 5742138 tggaaactatt 5742148
>dbj|AP005416.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23 Length = 149341 Score = 165 bits (83), Expect = 2e-37 Identities = 146/167 (87%) Strand = Plus / Plus Query: 178 gggttacccaatgttggcaaatcaactttcttcaacatagtaacgaagttgtccattccg 237 |||||||| |||||||||||||| |||||||| ||||||||||| ||| |||| || || Sbjct: 96119 gggttaccaaatgttggcaaatccactttctttaacatagtaacaaagctgtctatccca 96178 Query: 238 gccgagaacttcccattctgtaccattgaaccaaatgaggcacgggtgcatgttccggac 297 || ||||||||||| ||||||||||| || ||||||||||||||||| ||||||| || Sbjct: 96179 gctgagaacttccctttctgtaccatcgacccaaatgaggcacgggtatatgttccagat 96238 Query: 298 gaacgatttgactggctttgccaacttttcaagccaaagagtgaggt 344 || ||||||| |||||||| ||||||| |||||||||||||||||| Sbjct: 96239 gagagatttgattggctttgtcaactttacaagccaaagagtgaggt 96285 Score = 149 bits (75), Expect = 1e-32 Identities = 114/127 (89%) Strand = Plus / Plus Query: 341 aggtggctgcatatctggaaatcaacgacatagccggtcttgttagaggagcaagtgcag 400 ||||| |||||||||| |||||||| ||||||||||| |||||||||||||| ||| | Sbjct: 96364 aggtgtctgcatatctagaaatcaatgacatagccgggcttgttagaggagcccatgctg 96423 Query: 401 gggagggtctgggcaatgccttcttatcccatatacgtgctgttgatggaatctttcatg 460 |||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||| Sbjct: 96424 gggagggtttgggcaatgccttcctatcccatatacgcgctgttgatggaatttttcatg 96483 Query: 461 tcttgag 467 | ||||| Sbjct: 96484 tattgag 96490 Score = 133 bits (67), Expect = 7e-28 Identities = 85/91 (93%) Strand = Plus / Plus Query: 86 cgatgccgcccaaggcgtcgaagaaggacgccgagccggcggagcgccccatcctcggcc 145 ||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct: 95123 cgatgccgcccaaggcgtccaagaaggacgccgcccccgccgagcgccccatcctcggcc 95182 Query: 146 gcttctcctcccacctcaagatcggaatcgt 176 ||||||||||||||||||||||||| ||||| Sbjct: 95183 gcttctcctcccacctcaagatcgggatcgt 95213 Score = 85.7 bits (43), Expect = 1e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 467 gagcatttgaagacaaggaaatcactcatattgatgatacagttgatcctgttcgtgatt 526 |||||||||||||||| ||| | ||||||||||||||| |||| ||||||||| | |||| Sbjct: 96703 gagcatttgaagacaaagaagttactcatattgatgattcagtggatcctgttagagatt 96762 Query: 527 tggaaactatt 537 ||||||||||| Sbjct: 96763 tggaaactatt 96773
>gb|AF108896.1|AF108896 Capsicum annuum GTP-binding protein mRNA, complete cds Length = 1557 Score = 83.8 bits (42), Expect = 5e-13 Identities = 174/218 (79%) Strand = Plus / Plus Query: 133 cccatcctcggccgcttctcctcccacctcaagatcggaatcgtcgggttacccaatgtt 192 ||||| |||||||| ||||| || ||| | || || |||||||| || ||||| ||||| Sbjct: 61 cccattctcggccgtttctcatctcacttgaaaattggaatcgtaggattaccaaatgtg 120 Query: 193 ggcaaatcaactttcttcaacatagtaacgaagttgtccattccggccgagaacttccca 252 || || || ||| ||||||||| | | || ||||| ||||||||||| || ||||| || Sbjct: 121 gggaagtctactctcttcaacacactgacaaagttatccattccggcagaaaactttcct 180 Query: 253 ttctgtaccattgaaccaaatgaggcacgggtgcatgttccggacgaacgatttgactgg 312 || ||||| || || || ||||| || || || || || ||||| || || ||||| ||| Sbjct: 181 ttttgtactatcgagcctaatgaagctcgagtacacgtgccggatgagcggtttgaatgg 240 Query: 313 ctttgccaacttttcaagccaaagagtgaggtggctgc 350 || |||||||||| |||||| ||||| ||||||||||| Sbjct: 241 ctctgccaactttacaagcccaagagcgaggtggctgc 278
>ref|NM_102795.2| Arabidopsis thaliana GTP binding AT1G30580 mRNA, complete cds Length = 1549 Score = 81.8 bits (41), Expect = 2e-12 Identities = 161/201 (80%) Strand = Plus / Plus Query: 142 ggccgcttctcctcccacctcaagatcggaatcgtcgggttacccaatgttggcaaatca 201 ||||| ||||| || ||||||||||||||||| || |||||||| |||||||| ||||| Sbjct: 139 ggccgtttctcttctcacctcaagatcggaattgttgggttaccaaatgttggaaaatct 198 Query: 202 actttcttcaacatagtaacgaagttgtccattccggccgagaacttcccattctgtacc 261 ||| | ||||||| | || ||| | || ||||| || ||||| ||||| || |||||| Sbjct: 199 actcttttcaacactcttacaaagctttcaattccagctgagaatttccccttttgtacc 258 Query: 262 attgaaccaaatgaggcacgggtgcatgttccggacgaacgatttgactggctttgccaa 321 ||||| || ||||||||||| ||| || | || || || | || || |||||||||||| Sbjct: 259 attgagcctaatgaggcacgtgtgaatatccccgatgagaggttcgattggctttgccaa 318 Query: 322 cttttcaagccaaagagtgag 342 || |||||| ||||||||| Sbjct: 319 acttacaagcctaagagtgag 339
>gb|AY085845.1| Arabidopsis thaliana clone 18981 mRNA, complete sequence Length = 1497 Score = 81.8 bits (41), Expect = 2e-12 Identities = 161/201 (80%) Strand = Plus / Plus Query: 142 ggccgcttctcctcccacctcaagatcggaatcgtcgggttacccaatgttggcaaatca 201 ||||| ||||| || ||||||||||||||||| || |||||||| |||||||| ||||| Sbjct: 140 ggccgtttctcttctcacctcaagatcggaattgttgggttaccaaatgttggaaaatct 199 Query: 202 actttcttcaacatagtaacgaagttgtccattccggccgagaacttcccattctgtacc 261 ||| | ||||||| | || ||| | || ||||| || ||||| ||||| || |||||| Sbjct: 200 actcttttcaacactcttacaaagctttcaattccagctgagaatttccccttttgtacc 259 Query: 262 attgaaccaaatgaggcacgggtgcatgttccggacgaacgatttgactggctttgccaa 321 ||||| || ||||||||||| ||| || | || || || | || || |||||||||||| Sbjct: 260 attgagcctaatgaggcacgtgtgaatatccccgatgagaggttcgattggctttgccaa 319 Query: 322 cttttcaagccaaagagtgag 342 || |||||| ||||||||| Sbjct: 320 acttacaagcctaagagtgag 340
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence Length = 96183 Score = 54.0 bits (27), Expect = 5e-04 Identities = 132/167 (79%) Strand = Plus / Minus Query: 178 gggttacccaatgttggcaaatcaactttcttcaacatagtaacgaagttgtccattccg 237 |||||||| |||||||| ||||| ||| | ||||||| | || ||| | || ||||| Sbjct: 10282 gggttaccaaatgttggaaaatctactcttttcaacactcttacaaagctttcaattcca 10223 Query: 238 gccgagaacttcccattctgtaccattgaaccaaatgaggcacgggtgcatgttccggac 297 || ||||| ||||| || ||||||||||| || ||||||||||| ||| || | || || Sbjct: 10222 gctgagaatttccccttttgtaccattgagcctaatgaggcacgtgtgaatatccccgat 10163 Query: 298 gaacgatttgactggctttgccaacttttcaagccaaagagtgaggt 344 || | || || |||||||||||| || |||||| ||||||||||| Sbjct: 10162 gagaggttcgattggctttgccaaacttacaagcctaagagtgaggt 10116 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Minus Query: 420 cttcttatcccatatacgtgctgttgatggaatctttcatgt 461 |||||| |||||||| ||||| ||||||||||| || ||||| Sbjct: 9937 cttcttgtcccatattcgtgcagttgatggaattttccatgt 9896 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 142 ggccgcttctcctcccacctcaagatcggaat 173 ||||| ||||| || ||||||||||||||||| Sbjct: 10651 ggccgtttctcttctcacctcaagatcggaat 10620
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 236 cggccgagaacttcccattctgtaccattgaacc 269 |||||||||||||||| ||||| ||||||||||| Sbjct: 1183565 cggccgagaacttccccttctgcaccattgaacc 1183532
>emb|BX321862.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 7/10 Length = 295250 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 169 ggaatcgtcgggttacccaatgttggcaaatcaacttt 206 ||||||||||| || ||||||||||||||||| ||||| Sbjct: 133578 ggaatcgtcggtttgcccaatgttggcaaatccacttt 133541
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Minus Query: 183 acccaatgttggcaaatcaactttcttcaaca 214 ||||||||| ||||||||||||||| |||||| Sbjct: 801604 acccaatgtaggcaaatcaactttcatcaaca 801573
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 184 cccaatgttggcaaatcaacttt 206 ||||||||||||||||||||||| Sbjct: 319564 cccaatgttggcaaatcaacttt 319586
>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete genome Length = 686194 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 244 aacttcccattctgtaccattgaacc 269 ||||||||||||||||| |||||||| Sbjct: 315060 aacttcccattctgtactattgaacc 315085
>ref|XM_792116.1| PREDICTED: Strongylocentrotus purpuratus similar to CG1354-PA, isoform A (LOC592602), mRNA Length = 1185 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Plus Query: 159 cctcaagatcggaatcgtcgggttacccaatgttggcaaatcaactttcttcaa 212 ||||||||| || || || || ||||| |||||||| ||||| ||||||||||| Sbjct: 66 cctcaagattggtattgttggtttaccaaatgttgggaaatccactttcttcaa 119
>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome Length = 706569 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 cccaatgttggcaaatcaact 204 ||||||||||||||||||||| Sbjct: 508130 cccaatgttggcaaatcaact 508110
>gb|AC122540.4| Mus musculus BAC clone RP24-555K13 from chromosome 17, complete sequence Length = 149770 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 310 tggctttgccaacttttcaagccaa 334 ||||| ||||||||||||||||||| Sbjct: 117622 tggctctgccaacttttcaagccaa 117598
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gacgccgagccggcggagcgc 132 ||||||||||||||||||||| Sbjct: 4441451 gacgccgagccggcggagcgc 4441471
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 244 aacttcccattctgtaccattgaaccaaa 272 |||||||| ||||||||||| |||||||| Sbjct: 775803 aacttcccgttctgtaccatcgaaccaaa 775775
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 gccgagcccgatgccgcccaa 98 ||||||||||||||||||||| Sbjct: 1612934 gccgagcccgatgccgcccaa 1612954
>emb|Z93387.1|CET02E9 Caenorhabditis elegans Cosmid T02E9, complete sequence Length = 34263 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 505 acagttgatcctgttcgtgat 525 ||||||||||||||||||||| Sbjct: 1222 acagttgatcctgttcgtgat 1242
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 172 atcgtcgggttacccaatgttggcaaatcaact 204 ||||| || |||||||||||||| ||||||||| Sbjct: 791485 atcgtaggtttacccaatgttggtaaatcaact 791453
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 agccgagcccgatgccgccc 96 |||||||||||||||||||| Sbjct: 3215529 agccgagcccgatgccgccc 3215548
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 gacgaacgatttgactggctttgc 318 ||||| |||||||||||||||||| Sbjct: 1490445 gacgagcgatttgactggctttgc 1490422
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gcaccacctcgccgcagcgg 76 |||||||||||||||||||| Sbjct: 274852 gcaccacctcgccgcagcgg 274833
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 cggccgagaacttcccattctgtaccat 263 |||||||||||||||| ||||| ||||| Sbjct: 5359586 cggccgagaacttccccttctgcaccat 5359613
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 acctcaagatcggaatcgtcgggt 181 ||||||||||||| |||||||||| Sbjct: 1794140 acctcaagatcggcatcgtcgggt 1794117
>ref|XM_421527.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC423644), mRNA Length = 12726 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gaacttcccattctgtacca 262 |||||||||||||||||||| Sbjct: 2260 gaacttcccattctgtacca 2241
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 236 cggccgagaacttcccattctgtaccat 263 |||||||||||||||| ||||| ||||| Sbjct: 1077509 cggccgagaacttccccttctgcaccat 1077482
>gb|AC136363.2| Homo sapiens chromosome 17, clone RP11-18L18, complete sequence Length = 87532 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cccattctgtaccattgaac 268 |||||||||||||||||||| Sbjct: 44897 cccattctgtaccattgaac 44916
>ref|XM_390676.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10500.1) partial mRNA Length = 1326 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ccatcctcggccgcttctcc 153 |||||||||||||||||||| Sbjct: 929 ccatcctcggccgcttctcc 948
>ref|XM_569779.1| Cryptococcus neoformans var. neoformans JEC21 cytoplasm protein (CNC04930) partial mRNA Length = 1447 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 gacgaacgatttgactggctttgc 318 ||||| |||||||||||||||||| Sbjct: 389 gacgagcgatttgactggctttgc 412
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence Length = 172016 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 aggtggctgcatatctggaaatca 364 |||||||||||||| ||||||||| Sbjct: 64493 aggtggctgcatatatggaaatca 64470
>gb|AC139601.8| Medicago truncatula clone mth2-8h11, complete sequence Length = 126204 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 aggtggctgcatatctggaaatca 364 |||||||||||||| ||||||||| Sbjct: 123620 aggtggctgcatatatggaaatca 123643
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 cggccgagaacttcccattctgtaccat 263 |||||||||||||||| ||||| ||||| Sbjct: 5926983 cggccgagaacttccccttctgcaccat 5927010
>gb|BC109713.1| Bos taurus glutathione synthetase, mRNA (cDNA clone MGC:134298 IMAGE:8065103), complete cds Length = 1904 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ggtctgggcaatgccttctt 425 |||||||||||||||||||| Sbjct: 392 ggtctgggcaatgccttctt 373
>ref|NM_001015630.1| Bos taurus glutathione synthetase (GSS), mRNA Length = 1932 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ggtctgggcaatgccttctt 425 |||||||||||||||||||| Sbjct: 436 ggtctgggcaatgccttctt 417
>ref|XM_345031.2| PREDICTED: Rattus norvegicus similar to tolloid-like-2 protein (LOC365460), mRNA Length = 3498 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccccatcctcggccgcttct 151 |||||||||||||||||||| Sbjct: 2982 ccccatcctcggccgcttct 3001
>gb|AC131274.9| Homo sapiens chromosome 17, clone RP11-285M22, complete sequence Length = 158329 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cccattctgtaccattgaac 268 |||||||||||||||||||| Sbjct: 62399 cccattctgtaccattgaac 62418
>emb|BX088724.6| Zebrafish DNA sequence from clone DKEY-15G22, complete sequence Length = 198368 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 tctgggcaatgccttcttat 427 |||||||||||||||||||| Sbjct: 81022 tctgggcaatgccttcttat 81003
>gb|BT020647.1| Bos taurus glutathione synthetase (GSS), mRNA, complete cds Length = 1932 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ggtctgggcaatgccttctt 425 |||||||||||||||||||| Sbjct: 436 ggtctgggcaatgccttctt 417
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 ttacccaatgttggcaaatcaact 204 ||||| |||||||||||||||||| Sbjct: 924284 ttaccaaatgttggcaaatcaact 924261
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 ttacccaatgttggcaaatcaact 204 ||||| |||||||||||||||||| Sbjct: 697665 ttaccaaatgttggcaaatcaact 697642
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 247 ttcccattctgtaccattgaaccaaatg 274 |||||||||||||| ||||| ||||||| Sbjct: 1135010 ttcccattctgtacgattgagccaaatg 1134983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,361,480 Number of Sequences: 3902068 Number of extensions: 4361480 Number of successful extensions: 88515 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88032 Number of HSP's gapped (non-prelim): 480 length of query: 543 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 520 effective length of database: 17,143,297,704 effective search space: 8914514806080 effective search space used: 8914514806080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
