>FLHA_HELPJ (Q9ZM40) Flagellar biosynthesis protein flhA|
          Length = 733

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +1

Query: 124 AST-TVLLLGSDLAVQ--PLADEIQLDVKALNSTDPGSPDYA-KLVQEIQNDAKELLLEG 291
           AST T+L +G  L  Q   L       + A  +T     D+A KL+ ++ N +K L++ G
Sbjct: 243 ASTFTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVG 302

Query: 292 AGYLLFAVV 318
           A  LLFA +
Sbjct: 303 ANLLLFATI 311

>IRX3_HUMAN (P78415) Iroquois-class homeodomain protein IRX-3 (Iroquois|
           homeobox protein 3) (Homeodomain protein IRXB1)
          Length = 501

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 23/62 (37%), Positives = 27/62 (43%)
 Frame = +3

Query: 333 PDPPPIRHRLDVLRRAAYYLQGAPRES*GAAEGPPAHARLRLRPGDRLHRVSGVDGGTSR 512
           P P P  H L +L  A  +L G P      A G PA A    RP +        +GGT R
Sbjct: 416 PPPGPRLHPLSLLGSAPPHLLGLP-----GAAGHPAAAAAFARPAE-------PEGGTDR 463

Query: 513 CS 518
           CS
Sbjct: 464 CS 465

>IRX4_CHICK (Q9YGS0) Iroquois-class homeodomain protein IRX-4 (Iroquois|
           homeobox protein 4)
          Length = 485

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 495 QRQKHDVDDLQDVDEGEREQGALQLRLSFPEEHP 394
           + ++ ++ DL+D+D  E E    ++R  FP  HP
Sbjct: 248 EEKELELSDLEDLDAAESESSECEMRRPFPHPHP 281

>MURA_SYNEL (Q8DKS7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 439

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
 Frame = +1

Query: 82  RNRGLFIAVGAIVIASTTVLLLGSDLA---------------VQPLADE-IQLDVKALNS 213
           +N  L +  GA++ A TT+L    DLA               VQ L  E I +D  ALN+
Sbjct: 34  KNSALVLMAGALLAADTTILRAVPDLADIRRLGEILQALGVKVQRLGSEAIAIDATALNT 93

Query: 214 TDP 222
            DP
Sbjct: 94  NDP 96

>DCMR_METDI (P45876) Transcriptional repressor dcmR|
          Length = 265

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 193 DVKALNSTDPGSPDYAKLVQEIQNDAKELLLEGAGYLLFAVVISSAVRILLLFATVL--- 363
           D+  LN+T PG     K+++E+  D  + + +  G L+F  +  +   +L     +    
Sbjct: 128 DICFLNATQPGKAHILKVLREVYPDVHKAIKD--GQLIFPALKRNKAEMLDQLEEMFLKA 185

Query: 364 TYSGEQR 384
           TYSGEQ+
Sbjct: 186 TYSGEQK 192

>FLHA_HELPY (O06758) Flagellar biosynthesis protein flhA|
          Length = 733

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +1

Query: 124 AST-TVLLLGSDLAVQ--PLADEIQLDVKALNSTDPGSPDYA-KLVQEIQNDAKELLLEG 291
           AST T+L +G  L  Q   L       + A  +T     D+A KL+ ++ N +K L++ G
Sbjct: 243 ASTFTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVG 302

Query: 292 AGYLLFAVV 318
           A  LLFA +
Sbjct: 303 AILLLFATI 311

>RN146_MOUSE (Q9CZW6) RING finger protein 146|
          Length = 359

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 168 LDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRS 34
           L G+  AE  HRG G++D      E P +GR  D  + E E   S
Sbjct: 254 LSGDSIAERSHRGEGEED-----HESPSSGRVPDTSVEETESDAS 293

>UCRI_SOLTU (P37841) Ubiquinol-cytochrome c reductase iron-sulfur subunit,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein) (RISP)
          Length = 265

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = -1

Query: 323 LMTTANRRYPAPSSRSSLASFWISCTSLA*SGLPGSVLFSALTSSWISSARGWTARSL-- 150
           ++  A RR  + ++RSS   F  S  ++     P      +LTSS++   RG+++ S+  
Sbjct: 1   MLRVAGRRLSSSAARSSSTFFTRSSFTVTDDSSPARSPSPSLTSSFLDQIRGFSSNSVSP 60

Query: 149 PRRSTVVEAMTMAPTAMKSPRLRV 78
             +  +V  +     A+K+P  ++
Sbjct: 61  AHQLGLVSDLPATVAAIKNPSSKI 84

>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2|
           (EC 2.7.11.1)
          Length = 1798

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +3

Query: 330 RPDPPPIRHRLDVLRRAAYYLQGAPRES*GAAEGPPAHARLRLRPG 467
           RP PPP   R D ++RAA   Q  P         PP   RL  R G
Sbjct: 9   RPQPPPPDRREDGVQRAAELSQSLPPR----RRAPPGRQRLEERTG 50

>FLGK_ECOLI (P33235) Flagellar hook-associated protein 1 (HAP1)|
          Length = 546

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = +1

Query: 22  NPSTGPSFFNFLKEGVLLPTRNRGLFIAVGAIVIASTTVLLLGSDLAVQPLADEIQLDVK 201
           N   G  FF   K  VL  T+N+G  +A+GA V  ++ V  L +D  +    ++ Q+   
Sbjct: 319 NGDAGEDFFAIGKPAVLQNTKNKG-DVAIGATVTDASAV--LATDYKISFDNNQWQVTRL 375

Query: 202 ALNSTDPGSPD 234
           A N+T   +PD
Sbjct: 376 ASNTTFTVTPD 386

>HAS1_GIBZE (Q4IEK8) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)|
          Length = 590

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = -3

Query: 192 ELDLVGEGLDGEVAAEEEHRGRGDDDGADCYEE---------PPVAGREEDAF 61
           E D   E ++   +AEEE    GD+D A+   +         PPVAG E  +F
Sbjct: 65  ESDQADEDVEAANSAEEEEEEGGDEDNAENNTDLPNGGQLTLPPVAGAEAQSF 117

>MTRA_METKA (O32867) Tetrahydromethanopterin S-methyltransferase subunit A (EC|
           2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M
           methyltransferase subunit A)
          Length = 248

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 23/99 (23%), Positives = 44/99 (44%)
 Frame = +1

Query: 178 DEIQLDVKALNSTDPGSPDYAKLVQEIQNDAKELLLEGAGYLLFAVVISSAVRILLLFAT 357
           DEI   ++     DPG+ +   +   ++ + +E L E AG  + A  ++   RI  +   
Sbjct: 146 DEIVKAIEECVEKDPGAYEEGPMTISLEEEEEEELAEVAGMPVSAETVTVEYRINDVRVG 205

Query: 358 VLTYSGEQRTTFRVLLGKAKAQLKGPLLTLAFVYVLEIV 474
           V +    QR     L G+    L G +  + F+++  +V
Sbjct: 206 VKSIGAMQRYMAGYLSGRTMGLLIGIISGMIFLFLPMVV 244

>RN146_RAT (Q5XIK5) RING finger protein 146|
          Length = 352

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 168 LDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRS 34
           L G+  AE  HRG G++D      E P +GR  D    E E   S
Sbjct: 252 LSGDSIAERSHRGEGEED-----HESPSSGRVPDTSTEETESDAS 291

>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC|
           3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2
           homolog)
          Length = 1107

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 177 GEGLDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRSR 31
           GEG +   + E++    G+DD AD  E   V G+ E A L E+++ + +
Sbjct: 88  GEGDEESQSTEDDEAVVGEDDDADEAEGGAVVGKREKARLKEMQKLKKQ 136

>GRC3_GIBZE (Q4IR18) Protein GRC3|
          Length = 796

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 227 LPGSVLFSALTSSWISSARGWTARSLPRRSTVVEA-MTMAPTAMKSPRLRVGRRTPSFRK 51
           L G+ L+ + T  W+ +       ++P   T+ E  + + P        ++GR +P FRK
Sbjct: 163 LAGATLYPSETIEWVHAPH---CHAVPMLRTIDETILELHPDRNARGIRQLGRLSPLFRK 219

Query: 50  LKNEGP 33
           + NE P
Sbjct: 220 IWNESP 225

>RHIC_ORYRH (O76145) Rhinocerosin precursor|
          Length = 142

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 124 ASTTVLLLGSDLAVQPLADEIQLDVKALNSTDPGSPDY 237
           AS   L+   DLA +P  +E Q  ++   S  PG+P++
Sbjct: 42  ASPAELIFDEDLADEPEVEEPQYYIRTRRSLQPGAPNF 79

>AN32C_HUMAN (O43423) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member C (Tumorigenic protein pp32r1)
          Length = 234

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 174 EGLDGEVAAEEEHRGRGDDDGADCYEEPPVAGREEDAFL*EVEERRSR 31
           EG + E   EEE    GD++  + Y +  V G E++  L E E  + R
Sbjct: 186 EGEEEEEEGEEEDVSGGDEEDEEGYNDGEVDGEEDEEELGEEERGQKR 233

>ERIC1_HUMAN (Q86X53) Glutamate-rich protein 1|
          Length = 443

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 165 DGEVAAEEEHRGRGDDDGADCYEEPPVAGREED 67
           DG  A+EE+    G+++GAD  EE      EED
Sbjct: 297 DGADASEEDPTWAGEEEGADSGEEDGADASEED 329



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 153 AAEEEHRGRGDDDGADCYEEPPV-AGREEDA 64
           A EE+ +   ++DGAD  EE P  AG EE A
Sbjct: 285 AGEEDGKDTREEDGADASEEDPTWAGEEEGA 315



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 165 DGEVAAEEEHRGRGDDDGADCYEEPPVAGREED 67
           DG  A+EE+      ++GAD  EE P    EED
Sbjct: 233 DGADASEEDLTRARQEEGADASEEDPTPAGEED 265


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,002,344
Number of Sequences: 219361
Number of extensions: 1055800
Number of successful extensions: 4280
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4274
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)