>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 107/133 (80%)
 Strand = Plus / Minus

                                                                           
Query: 116     tcgtcatcgcctctaccacggtgctcctcctcggcagcgacctcgccgtccagcccctcg 175
               ||||| ||||||| ||  |||| |||||||| | ||  |||||||||||||||||| |||
Sbjct: 2253174 tcgtcgtcgcctccacgtcggttctcctccttgtcaatgacctcgccgtccagcccatcg 2253115

                                                                           
Query: 176     ccgacgagatccagctcgacgtcaaggcgctaaacagcaccgaccccggcagccccgact 235
               ||   |||||||  ||||||| |||||| || |||| |||||| |||   ||||| ||||
Sbjct: 2253114 ccatggagatcctcctcgacgccaaggctctcaacaccaccgatcccatgagcccggact 2253055

                            
Query: 236     acgccaagctcgt 248
                | ||||||||||
Sbjct: 2253054 tcaccaagctcgt 2253042



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                           
Query: 419     cgcagctgaagggccccctgctcacgctcgccttcgtctacgtcctggagatcgtctaca 478
               ||||||| ||||||||  |||| ||||| ||||| || | | |||||||||||| |||| 
Sbjct: 2245301 cgcagctcaagggcccgttgctgacgctggcctttgtattcttcctggagatcgcctacg 2245242

                           
Query: 479     tcgtgtttctgg 490
               ||| | ||||||
Sbjct: 2245241 tcgcgcttctgg 2245230

>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0448B11
          Length = 179858

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 107/133 (80%)
 Strand = Plus / Minus

                                                                          
Query: 116    tcgtcatcgcctctaccacggtgctcctcctcggcagcgacctcgccgtccagcccctcg 175
              ||||| ||||||| ||  |||| |||||||| | ||  |||||||||||||||||| |||
Sbjct: 115012 tcgtcgtcgcctccacgtcggttctcctccttgtcaatgacctcgccgtccagcccatcg 114953

                                                                          
Query: 176    ccgacgagatccagctcgacgtcaaggcgctaaacagcaccgaccccggcagccccgact 235
              ||   |||||||  ||||||| |||||| || |||| |||||| |||   ||||| ||||
Sbjct: 114952 ccatggagatcctcctcgacgccaaggctctcaacaccaccgatcccatgagcccggact 114893

                           
Query: 236    acgccaagctcgt 248
               | ||||||||||
Sbjct: 114892 tcaccaagctcgt 114880



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                          
Query: 419    cgcagctgaagggccccctgctcacgctcgccttcgtctacgtcctggagatcgtctaca 478
              ||||||| ||||||||  |||| ||||| ||||| || | | |||||||||||| |||| 
Sbjct: 107139 cgcagctcaagggcccgttgctgacgctggcctttgtattcttcctggagatcgcctacg 107080

                          
Query: 479    tcgtgtttctgg 490
              ||| | ||||||
Sbjct: 107079 tcgcgcttctgg 107068

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 168     gcccctcgccgacgagatccagctcg 193
               ||||| ||||||||||||||||||||
Sbjct: 6978837 gccccccgccgacgagatccagctcg 6978862

>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470A03
          Length = 133167

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 168   gcccctcgccgacgagatccagctcg 193
             ||||| ||||||||||||||||||||
Sbjct: 72459 gccccccgccgacgagatccagctcg 72484

>ref|XM_753956.1| Ustilago maydis 521 hypothetical protein (UM02902.1) partial mRNA
          Length = 1656

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 134  cggtgctcctcctcggcagcg 154
            |||||||||||||||||||||
Sbjct: 1331 cggtgctcctcctcggcagcg 1311

>ref|XM_392107.2| PREDICTED: Apis mellifera similar to CG4832-PA, isoform A
           (LOC408563), mRNA
          Length = 4226

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 170 ccctcgccgacgagatccagc 190
           |||||||||||||||||||||
Sbjct: 49  ccctcgccgacgagatccagc 69

>gb|AY487463.1| Uncultured organism clone 2A21 nitrilase (BD7052) gene, complete
           cds
          Length = 1014

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 147 cggcagcgacctcgccgtcca 167
           |||||||||||||||||||||
Sbjct: 441 cggcagcgacctcgccgtcca 461

>ref|NM_214239.1| Sus scrofa membrane-type 1 matrix metalloproteinase (MT1-MMP), mRNA
          Length = 3284

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 432 ccccctgctcacgctcgcct 451
           ||||||||||||||||||||
Sbjct: 39  ccccctgctcacgctcgcct 58

>ref|XM_426427.1| PREDICTED: Gallus gallus similar to cytosolic phospholipase A2 delta
            (LOC428870), mRNA
          Length = 7032

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   gttcttcaacttcctaaagg 61
            ||||||||||||||||||||
Sbjct: 5970 gttcttcaacttcctaaagg 5989

>gb|AC127417.3| Mus musculus BAC clone RP23-459M2 from chromosome 10, complete sequence
          Length = 192814

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     aaaccatggcaaccaatccaagca 31
             ||||||||||||||||| ||||||
Sbjct: 81375 aaaccatggcaaccaattcaagca 81352

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 481     gtgtttctggcgttgatggg 500
               ||||||||||||||||||||
Sbjct: 1783502 gtgtttctggcgttgatggg 1783521

>emb|CR788249.6| Zebrafish DNA sequence from clone DKEY-10F21 in linkage group 2, complete
              sequence
          Length = 202982

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 276    gctcctgctcgaaggcgcagggta 299
              |||||||||||||||| |||||||
Sbjct: 103683 gctcctgctcgaaggctcagggta 103706

>ref|XM_971049.1| PREDICTED: Tribolium castaneum hypothetical protein LOC655898
           (LOC655898), mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 140 tcctcctcggcagcgacctcgccgtcca 167
           ||||||||| ||||||||||||| ||||
Sbjct: 583 tcctcctcgccagcgacctcgccctcca 556

>gb|DQ397567.1| Cenarchaeum symbiosum clone C07B06, complete sequence
          Length = 41363

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  ccgtccagcccctcgccgac 180
            ||||||||||||||||||||
Sbjct: 3294 ccgtccagcccctcgccgac 3275

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 134     cggtgctcctcctcggcagcgacc 157
               |||||||| |||||||||||||||
Sbjct: 2453795 cggtgctcttcctcggcagcgacc 2453818

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    ccctgctcacgctcgccttc 453
              ||||||||||||||||||||
Sbjct: 521513 ccctgctcacgctcgccttc 521494

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 162      cgtccagcccctcgccgacg 181
                ||||||||||||||||||||
Sbjct: 23036573 cgtccagcccctcgccgacg 23036554

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 109      ggcgccatcgtcatcgcctc 128
                ||||||||||||||||||||
Sbjct: 17599504 ggcgccatcgtcatcgcctc 17599485

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 153     cgacctcgccgtccagcccctcgc 176
               ||||||||||||||||| ||||||
Sbjct: 5866936 cgacctcgccgtccagcgcctcgc 5866959

>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0436B06
          Length = 148947

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ggcgccatcgtcatcgcctc 128
             ||||||||||||||||||||
Sbjct: 76154 ggcgccatcgtcatcgcctc 76135

>gb|AF067419.1|AF067419 Sus scrofa membrane-type 1 matrix metalloproteinase (MT1-MMP) mRNA,
           complete cds
          Length = 3284

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 432 ccccctgctcacgctcgcct 451
           ||||||||||||||||||||
Sbjct: 39  ccccctgctcacgctcgcct 58

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    tcggcgccatcgtcatcgcc 126
              ||||||||||||||||||||
Sbjct: 279116 tcggcgccatcgtcatcgcc 279135

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 162      cgtccagcccctcgccgacg 181
                ||||||||||||||||||||
Sbjct: 22964764 cgtccagcccctcgccgacg 22964745

>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    cgtccagcccctcgccgacg 181
              ||||||||||||||||||||
Sbjct: 145850 cgtccagcccctcgccgacg 145831

>dbj|AP006427.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45A23, TM0318,
             complete sequence
          Length = 117676

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   tcgcctctaccacggtgctcctcc 145
             ||||||||||||||||||| ||||
Sbjct: 15616 tcgcctctaccacggtgcttctcc 15639


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,786,976
Number of Sequences: 3902068
Number of extensions: 2786976
Number of successful extensions: 54964
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54448
Number of HSP's gapped (non-prelim): 516
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)