ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28g04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467638.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1074 Score = 494 bits (249), Expect = e-136 Identities = 345/377 (91%) Strand = Plus / Plus Query: 171 ggcccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaacaactacttc 230 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 ggcccggtgacatacgtgttcggcgactcgatgtcggacgtggggaacaacaactacttc 147 Query: 231 cagctctccctcgccaggtccaactacccctggtacggcatcgactaccccaacggcgtc 290 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 ccgctctccctcgccaagtccaactacccctggtacggcatcgactaccccaacggcgtc 207 Query: 291 gccaccgggaggttcaccaacgggagaaccatcggagactacatggctgccaagtttggc 350 |||||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||| Sbjct: 208 gccaccgggaggttcaccaatggaagaaccatcggagactacatggctgacaagttcggc 267 Query: 351 atcccacccccgccgccgttcctctccctgtcgctggccgacgacaacttcctcgccggc 410 |||| |||||||||||||||| || ||||| ||| | ||||| || |||||| |||| Sbjct: 268 gtcccgtccccgccgccgttcctgtcgctgtcaatggtctacgacgacgtcctcggcggc 327 Query: 411 gtcaacttcgcgtctggtggcgccggcattctgaatgagaccggcgcctactttgtcgag 470 |||||||||||||| || ||||||||||||||||| ||||| |||| ||||||||| || Sbjct: 328 gtcaacttcgcgtccggcggcgccggcattctgaacgagacgggcgtctactttgttcag 387 Query: 471 tacttctcgttcgacgagcagatatcgtgcttcgagactgtcaagagggccatgatcgcc 530 |||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||| Sbjct: 388 tacttctcattcgaccagcagatatcgtgcttcgagatggtcaagaaggcgatgatcgcc 447 Query: 531 aagatcggcaaggaggc 547 ||||||||||||||||| Sbjct: 448 aagatcggcaaggaggc 464
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 289 bits (146), Expect = 5e-75 Identities = 161/166 (96%) Strand = Plus / Minus Query: 171 ggcccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaacaactacttc 230 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30574658 ggcccggtgacatacgtgttcggcgactcgatgtcggacgtggggaacaacaactacttc 30574599 Query: 231 cagctctccctcgccaggtccaactacccctggtacggcatcgactaccccaacggcgtc 290 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30574598 ccgctctccctcgccaagtccaactacccctggtacggcatcgactaccccaacggcgtc 30574539 Query: 291 gccaccgggaggttcaccaacgggagaaccatcggagactacatgg 336 |||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 30574538 gccaccgggaggttcaccaatggaagaaccatcggagactacatgg 30574493 Score = 109 bits (55), Expect = 1e-20 Identities = 112/131 (85%) Strand = Plus / Minus Query: 336 gctgccaagtttggcatcccacccccgccgccgttcctctccctgtcgctggccgacgac 395 |||| |||||| ||| |||| |||||||||||||||| || ||||| ||| | ||||| Sbjct: 30574405 gctgacaagttcggcgtcccgtccccgccgccgttcctgtcgctgtcaatggtctacgac 30574346 Query: 396 aacttcctcgccggcgtcaacttcgcgtctggtggcgccggcattctgaatgagaccggc 455 || |||||| |||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 30574345 gacgtcctcggcggcgtcaacttcgcgtccggcggcgccggcattctgaacgagacgggc 30574286 Query: 456 gcctactttgt 466 | ||||||||| Sbjct: 30574285 gtctactttgt 30574275 Score = 109 bits (55), Expect = 1e-20 Identities = 73/79 (92%) Strand = Plus / Minus Query: 469 agtacttctcgttcgacgagcagatatcgtgcttcgagactgtcaagagggccatgatcg 528 |||||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||| Sbjct: 30574183 agtacttctcattcgaccagcagatatcgtgcttcgagatggtcaagaaggcgatgatcg 30574124 Query: 529 ccaagatcggcaaggaggc 547 ||||||||||||||||||| Sbjct: 30574123 ccaagatcggcaaggaggc 30574105 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 |||||||||||||||||||| | |||||| ||||||||| Sbjct: 30985734 gtacgtgttcggcgactcgacggtggacgtcgggaacaac 30985695 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 185 cgtgttcggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||||||||||||| | |||||||| |||||||||||| Sbjct: 27176385 cgtgttcggcgactcgacggttgacgtgggcaacaacaactac 27176343 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 185 cgtgttcggcgactcgatgtcggacgtggggaacaacaac 224 ||||||||||||||||| | ||||| |||||||||||| Sbjct: 15410481 cgtgttcggcgactcgacggtggacgccgggaacaacaac 15410520
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 289 bits (146), Expect = 5e-75 Identities = 161/166 (96%) Strand = Plus / Minus Query: 171 ggcccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaacaactacttc 230 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86666 ggcccggtgacatacgtgttcggcgactcgatgtcggacgtggggaacaacaactacttc 86607 Query: 231 cagctctccctcgccaggtccaactacccctggtacggcatcgactaccccaacggcgtc 290 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86606 ccgctctccctcgccaagtccaactacccctggtacggcatcgactaccccaacggcgtc 86547 Query: 291 gccaccgggaggttcaccaacgggagaaccatcggagactacatgg 336 |||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 86546 gccaccgggaggttcaccaatggaagaaccatcggagactacatgg 86501 Score = 109 bits (55), Expect = 1e-20 Identities = 112/131 (85%) Strand = Plus / Minus Query: 336 gctgccaagtttggcatcccacccccgccgccgttcctctccctgtcgctggccgacgac 395 |||| |||||| ||| |||| |||||||||||||||| || ||||| ||| | ||||| Sbjct: 86413 gctgacaagttcggcgtcccgtccccgccgccgttcctgtcgctgtcaatggtctacgac 86354 Query: 396 aacttcctcgccggcgtcaacttcgcgtctggtggcgccggcattctgaatgagaccggc 455 || |||||| |||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 86353 gacgtcctcggcggcgtcaacttcgcgtccggcggcgccggcattctgaacgagacgggc 86294 Query: 456 gcctactttgt 466 | ||||||||| Sbjct: 86293 gtctactttgt 86283 Score = 109 bits (55), Expect = 1e-20 Identities = 73/79 (92%) Strand = Plus / Minus Query: 469 agtacttctcgttcgacgagcagatatcgtgcttcgagactgtcaagagggccatgatcg 528 |||||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||| Sbjct: 86191 agtacttctcattcgaccagcagatatcgtgcttcgagatggtcaagaaggcgatgatcg 86132 Query: 529 ccaagatcggcaaggaggc 547 ||||||||||||||||||| Sbjct: 86131 ccaagatcggcaaggaggc 86113
>dbj|AK108686.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C04, full insert sequence Length = 1426 Score = 172 bits (87), Expect = 8e-40 Identities = 291/359 (81%) Strand = Plus / Plus Query: 189 ttcggcgactcgatgtcggacgtggggaacaacaactacttccagctctccctcgccagg 248 ||||||||||||||||| ||||| ||||||||||||||| || ||||| ||||| | | Sbjct: 164 ttcggcgactcgatgtccgacgtcgggaacaacaactacctcatcctctcgctcgcgaag 223 Query: 249 tccaactacccctggtacggcatcgactaccccaacggcgtcgccaccgggaggttcacc 308 ||| | ||||||||||||||| |||||||| | ||| || |||||||| |||||||| Sbjct: 224 tccgattacccctggtacggcgtcgactacgagaccggattccccaccgggcggttcacc 283 Query: 309 aacgggagaaccatcggagactacatggctgccaagtttggcatcccacccccgccgccg 368 || || || |||||||| ||| |||||| |||||||||||| |||| || ||||||||| Sbjct: 284 aatggcaggaccatcggggacatcatggccgccaagtttggcgtcccgccgccgccgccg 343 Query: 369 ttcctctccctgtcgctggccgacgacaacttcctcgccggcgtcaacttcgcgtctggt 428 ||||| || ||| || |||||||| | | |||| |||||||||||||||||| || Sbjct: 344 ttcctgtcgttgtacatgaccgacgacgaggtgctcggcggcgtcaacttcgcgtccggc 403 Query: 429 ggcgccggcattctgaatgagaccggcgcctactttgtcgagtacttctcgttcgacgag 488 ||||||||| | || || ||||||||| ||||| || ||||| | ||||||||| | Sbjct: 404 ggcgccggcctcctcaacgagaccggcatttacttcgttcagtacctgtcgttcgacaac 463 Query: 489 cagatatcgtgcttcgagactgtcaagagggccatgatcgccaagatcggcaaggaggc 547 |||||||||| |||||| |||||| ||||||||||||||||| |||||| |||| Sbjct: 464 cagatatcgtcgttcgaggagatcaagaacgccatgatcgccaagattggcaagaaggc 522
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 89.7 bits (45), Expect = 9e-15 Identities = 114/137 (83%) Strand = Plus / Plus Query: 189 ttcggcgactcgatgtcggacgtggggaacaacaactacttccagctctccctcgccagg 248 ||||||||||||||||| ||||| ||||||||||||||| || ||||| ||||| | | Sbjct: 8247882 ttcggcgactcgatgtccgacgtcgggaacaacaactacctcatcctctcgctcgcgaag 8247941 Query: 249 tccaactacccctggtacggcatcgactaccccaacggcgtcgccaccgggaggttcacc 308 ||| | ||||||||||||||| |||||||| | ||| || |||||||| |||||||| Sbjct: 8247942 tccgattacccctggtacggcgtcgactacgagaccggattccccaccgggcggttcacc 8248001 Query: 309 aacgggagaaccatcgg 325 || || || |||||||| Sbjct: 8248002 aatggcaggaccatcgg 8248018 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 339 gccaagtttggcatcccacccccgccgccgttcctctccctgtcgctggccgacgacaac 398 |||||||||||| |||| || |||||||||||||| || ||| || |||||||| | Sbjct: 8248120 gccaagtttggcgtcccgccgccgccgccgttcctgtcgttgtacatgaccgacgacgag 8248179 Query: 399 ttcctcgccggcgtcaacttcgcgtctggtggcgccggcattctgaatgagaccggc 455 | |||| |||||||||||||||||| || ||||||||| | || || ||||||||| Sbjct: 8248180 gtgctcggcggcgtcaacttcgcgtccggcggcgccggcctcctcaacgagaccggc 8248236 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 189 ttcggcgactcgatgtcggacgtggggaacaacaactac 227 |||||||||||| ||||||||||||| |||||| ||||| Sbjct: 6747010 ttcggcgactcgctgtcggacgtgggcaacaacgactac 6747048 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 477 tcgttcgacgagcagatatcgtgcttcgagactgtcaagagggccatgatcgccaagatc 536 ||||||||| | |||||||||| |||||| |||||| ||||||||||||||||| Sbjct: 8248364 tcgttcgacaaccagatatcgtcgttcgaggagatcaagaacgccatgatcgccaagatt 8248423 Query: 537 ggcaaggaggc 547 |||||| |||| Sbjct: 8248424 ggcaagaaggc 8248434 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cccctggtacggcatcgact 276 |||||||||||||||||||| Sbjct: 6747078 cccctggtacggcatcgact 6747097
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 89.7 bits (45), Expect = 9e-15 Identities = 114/137 (83%) Strand = Plus / Plus Query: 189 ttcggcgactcgatgtcggacgtggggaacaacaactacttccagctctccctcgccagg 248 ||||||||||||||||| ||||| ||||||||||||||| || ||||| ||||| | | Sbjct: 140245 ttcggcgactcgatgtccgacgtcgggaacaacaactacctcatcctctcgctcgcgaag 140304 Query: 249 tccaactacccctggtacggcatcgactaccccaacggcgtcgccaccgggaggttcacc 308 ||| | ||||||||||||||| |||||||| | ||| || |||||||| |||||||| Sbjct: 140305 tccgattacccctggtacggcgtcgactacgagaccggattccccaccgggcggttcacc 140364 Query: 309 aacgggagaaccatcgg 325 || || || |||||||| Sbjct: 140365 aatggcaggaccatcgg 140381 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 339 gccaagtttggcatcccacccccgccgccgttcctctccctgtcgctggccgacgacaac 398 |||||||||||| |||| || |||||||||||||| || ||| || |||||||| | Sbjct: 140483 gccaagtttggcgtcccgccgccgccgccgttcctgtcgttgtacatgaccgacgacgag 140542 Query: 399 ttcctcgccggcgtcaacttcgcgtctggtggcgccggcattctgaatgagaccggc 455 | |||| |||||||||||||||||| || ||||||||| | || || ||||||||| Sbjct: 140543 gtgctcggcggcgtcaacttcgcgtccggcggcgccggcctcctcaacgagaccggc 140599 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 477 tcgttcgacgagcagatatcgtgcttcgagactgtcaagagggccatgatcgccaagatc 536 ||||||||| | |||||||||| |||||| |||||| ||||||||||||||||| Sbjct: 140727 tcgttcgacaaccagatatcgtcgttcgaggagatcaagaacgccatgatcgccaagatt 140786 Query: 537 ggcaaggaggc 547 |||||| |||| Sbjct: 140787 ggcaagaaggc 140797
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 89.7 bits (45), Expect = 9e-15 Identities = 114/137 (83%) Strand = Plus / Plus Query: 189 ttcggcgactcgatgtcggacgtggggaacaacaactacttccagctctccctcgccagg 248 ||||||||||||||||| ||||| ||||||||||||||| || ||||| ||||| | | Sbjct: 41387 ttcggcgactcgatgtccgacgtcgggaacaacaactacctcatcctctcgctcgcgaag 41446 Query: 249 tccaactacccctggtacggcatcgactaccccaacggcgtcgccaccgggaggttcacc 308 ||| | ||||||||||||||| |||||||| | ||| || |||||||| |||||||| Sbjct: 41447 tccgattacccctggtacggcgtcgactacgagaccggattccccaccgggcggttcacc 41506 Query: 309 aacgggagaaccatcgg 325 || || || |||||||| Sbjct: 41507 aatggcaggaccatcgg 41523 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Plus Query: 339 gccaagtttggcatcccacccccgccgccgttcctctccctgtcgctggccgacgacaac 398 |||||||||||| |||| || |||||||||||||| || ||| || |||||||| | Sbjct: 41625 gccaagtttggcgtcccgccgccgccgccgttcctgtcgttgtacatgaccgacgacgag 41684 Query: 399 ttcctcgccggcgtcaacttcgcgtctggtggcgccggcattctgaatgagaccggc 455 | |||| |||||||||||||||||| || ||||||||| | || || ||||||||| Sbjct: 41685 gtgctcggcggcgtcaacttcgcgtccggcggcgccggcctcctcaacgagaccggc 41741 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 477 tcgttcgacgagcagatatcgtgcttcgagactgtcaagagggccatgatcgccaagatc 536 ||||||||| | |||||||||| |||||| |||||| ||||||||||||||||| Sbjct: 41869 tcgttcgacaaccagatatcgtcgttcgaggagatcaagaacgccatgatcgccaagatt 41928 Query: 537 ggcaaggaggc 547 |||||| |||| Sbjct: 41929 ggcaagaaggc 41939
>ref|XM_463028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaac 224 ||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 99 gtacgtgctcggcgactcgctggcggacgtggggaacaacaac 141
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaac 224 ||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 21089758 gtacgtgctcggcgactcgctggcggacgtggggaacaacaac 21089716 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Minus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||| | ||||||||| | ||||||| ||||||||||||||| Sbjct: 21123518 gtacgtgctgggcgactcgcaggcggacgtagggaacaacaactac 21123473 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 agcaacagcagcagctagctagcac 38 |||| |||||||||||||||||||| Sbjct: 7056519 agcagcagcagcagctagctagcac 7056543 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 192 ggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||||| | ||||||| ||||||||||||||| Sbjct: 21161524 ggcgactcgcaggcggacgtcgggaacaacaactac 21161559 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcaacagcagcagctagc 32 |||||||||||||||||||| Sbjct: 18042604 cagcaacagcagcagctagc 18042585 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cgccgccgttcctctccctg 380 |||||||||||||||||||| Sbjct: 1657461 cgccgccgttcctctccctg 1657480
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete sequence Length = 131250 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaac 224 ||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 67514 gtacgtgctcggcgactcgctggcggacgtggggaacaacaac 67472 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Minus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||| | ||||||||| | ||||||| ||||||||||||||| Sbjct: 101274 gtacgtgctgggcgactcgcaggcggacgtagggaacaacaactac 101229
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaac 224 ||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 21082787 gtacgtgctcggcgactcgctggcggacgtggggaacaacaac 21082745 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Minus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||| | ||||||||| | ||||||| ||||||||||||||| Sbjct: 21116547 gtacgtgctgggcgactcgcaggcggacgtagggaacaacaactac 21116502 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 agcaacagcagcagctagctagcac 38 |||| |||||||||||||||||||| Sbjct: 7054414 agcagcagcagcagctagctagcac 7054438 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 192 ggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||||| | ||||||| ||||||||||||||| Sbjct: 21154553 ggcgactcgcaggcggacgtcgggaacaacaactac 21154588 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcaacagcagcagctagc 32 |||||||||||||||||||| Sbjct: 18036145 cagcaacagcagcagctagc 18036126 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cgccgccgttcctctccctg 380 |||||||||||||||||||| Sbjct: 1657459 cgccgccgttcctctccctg 1657478
>gb|BT018454.1| Zea mays clone EL01N0408D11.d mRNA sequence Length = 1429 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaactactt 229 |||||||||||||||||| | | |||||||||| | |||||||||||| Sbjct: 220 gtacgtgttcggcgactccacggcggacgtgggcaccaacaactactt 267
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 189 ttcggcgactcgatgtcggacgtggggaacaacaactac 227 |||||||||||| ||||||||||||| |||||| ||||| Sbjct: 76689 ttcggcgactcgctgtcggacgtgggcaacaacgactac 76727 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cccctggtacggcatcgact 276 |||||||||||||||||||| Sbjct: 76757 cccctggtacggcatcgact 76776
>ref|XM_467708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 872 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 |||||||||||||||||||| | |||||| ||||||||| Sbjct: 359 gtacgtgttcggcgactcgacggtggacgtcgggaacaac 398
>ref|XM_506961.1| PREDICTED Oryza sativa (japonica cultivar-group), P0516G10.12-1 mRNA Length = 1637 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 |||||||||||||||||||| | |||||| ||||||||| Sbjct: 356 gtacgtgttcggcgactcgacggtggacgtcgggaacaac 395
>ref|XM_467707.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1637 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 |||||||||||||||||||| | |||||| ||||||||| Sbjct: 355 gtacgtgttcggcgactcgacggtggacgtcgggaacaac 394
>emb|AJ000392.1|LMNACHRA3 Locusta migratoria mRNA of nAChR alpha3 subunit Length = 1623 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 465 gtcgagtacttctcgttcgacgagcaga 492 |||||||||||| ||||||||||||||| Sbjct: 361 gtcgagtacttcccgttcgacgagcaga 388
>emb|AJ606032.1| Triticum aestivum partial mRNA for putative GDSL-motif lipase (at2G04570 gene) Length = 432 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 185 cgtgttcggcgactcgatgtcggacgtggggaacaacaac 224 ||||||||||||||||| | ||||| ||||||||||||| Sbjct: 114 cgtgttcggcgactcgacggtggacgcggggaacaacaac 153
>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0516G10 Length = 148937 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 |||||||||||||||||||| | |||||| ||||||||| Sbjct: 40690 gtacgtgttcggcgactcgacggtggacgtcgggaacaac 40651
>dbj|AK111360.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H05, full insert sequence Length = 888 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 |||||||||||||||||||| | |||||| ||||||||| Sbjct: 359 gtacgtgttcggcgactcgacggtggacgtcgggaacaac 398
>ref|XM_310786.2| Anopheles gambiae str. PEST ENSANGP00000007985 (ENSANGG00000006024), partial mRNA Length = 2355 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 465 gtcgagtacttctcgttcgacgagcaga 492 |||||||||||| ||||||||||||||| Sbjct: 466 gtcgagtacttcccgttcgacgagcaga 493
>dbj|AK099325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033016K19, full insert sequence Length = 1637 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 |||||||||||||||||||| | |||||| ||||||||| Sbjct: 355 gtacgtgttcggcgactcgacggtggacgtcgggaacaac 394
>gb|AY705396.1| Anopheles gambiae nicotinic acetylcholine receptor subunit alpha 3 mRNA, complete cds Length = 2133 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 465 gtcgagtacttctcgttcgacgagcaga 492 |||||||||||| ||||||||||||||| Sbjct: 454 gtcgagtacttcccgttcgacgagcaga 481
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 185 cgtgttcggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||||||||||||| | |||||||| |||||||||||| Sbjct: 72834 cgtgttcggcgactcgacggttgacgtgggcaacaacaactac 72792
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 185 cgtgttcggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||||||||||||| | |||||||| |||||||||||| Sbjct: 27056 cgtgttcggcgactcgacggttgacgtgggcaacaacaactac 27014
>ref|XM_463033.1| Oryza sativa (japonica cultivar-group), mRNA Length = 342 Score = 44.1 bits (22), Expect = 0.48 Identities = 40/46 (86%) Strand = Plus / Plus Query: 182 gtacgtgttcggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||| | ||||||||| | ||||||| ||||||||||||||| Sbjct: 120 gtacgtgctgggcgactcgcaggcggacgtagggaacaacaactac 165
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 109 tcgtcgtcggcattgccgtcgc 130 |||||||||||||||||||||| Sbjct: 1464071 tcgtcgtcggcattgccgtcgc 1464092
>dbj|AK070261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042P13, full insert sequence Length = 1637 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Plus Query: 184 acgtgttcggcgactcgatgtcggacgtggggaacaac 221 |||||||||||||||||| | |||||| ||||||||| Sbjct: 358 acgtgttcggcgactcgacggtggacgtcgggaacaac 395
>ref|XM_472686.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1563 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 tcctcgccggcgtcaacttcgcgtc 424 |||||||||||||||| |||||||| Sbjct: 986 tcctcgccggcgtcaagttcgcgtc 1010
>gb|AE009240.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 10 of 187 of the complete sequence Length = 11331 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 cggcattgccgtcgccgccgc 136 ||||||||||||||||||||| Sbjct: 6936 cggcattgccgtcgccgccgc 6956
>gb|AE008373.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 177 of 187 of the complete sequence Length = 10511 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 cggcattgccgtcgccgccgc 136 ||||||||||||||||||||| Sbjct: 7521 cggcattgccgtcgccgccgc 7501
>ref|XM_756472.1| Ustilago maydis 521 hypothetical protein (UM05418.1) partial mRNA Length = 3612 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 aacaacaactacttccagctc 236 ||||||||||||||||||||| Sbjct: 975 aacaacaactacttccagctc 995
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 tcctcgccggcgtcaacttcgcgtc 424 |||||||||||||||| |||||||| Sbjct: 173600 tcctcgccggcgtcaagttcgcgtc 173624
>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07, complete sequence Length = 179021 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 tcctcgccggcgtcaacttcgcgtc 424 |||||||||||||||| |||||||| Sbjct: 11945 tcctcgccggcgtcaagttcgcgtc 11969
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11, complete sequence Length = 123620 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 agcaacagcagcagctagctagcac 38 |||| |||||||||||||||||||| Sbjct: 25846 agcagcagcagcagctagctagcac 25822
>gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, region 34D-35X, BAC clone BACR16P12, complete sequence Length = 171598 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 catcagcaacagcagcagcta 30 ||||||||||||||||||||| Sbjct: 64671 catcagcaacagcagcagcta 64651
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 400 tcctcgccggcgtcaacttcgcgtc 424 |||||||||||||||| |||||||| Sbjct: 22569845 tcctcgccggcgtcaagttcgcgtc 22569869 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 actacttccagctctccctcgcca 246 ||||| |||||||||||||||||| Sbjct: 31008553 actacctccagctctccctcgcca 31008576
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Minus Query: 173 cccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 ||||| || ||||||||||||||||||| || |||||| || |||||| Sbjct: 23332595 cccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 23332547
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 acagcagcagctagctagcacacca 42 |||||||||||||||||| |||||| Sbjct: 3465972 acagcagcagctagctagtacacca 3465948
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 acagcagcagctagctagcacacca 42 |||||||||||||||||| |||||| Sbjct: 99391 acagcagcagctagctagtacacca 99367
>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0672D01 Length = 146954 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 acagcagcagctagctagcacacca 42 |||||||||||||||||| |||||| Sbjct: 21689 acagcagcagctagctagtacacca 21665
>ref|XM_320314.2| Anopheles gambiae str. PEST ENSANGP00000016666 (ENSANGG00000014177), partial mRNA Length = 1203 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 gccatcagcaacagcagcagc 28 ||||||||||||||||||||| Sbjct: 731 gccatcagcaacagcagcagc 711
>dbj|AK071697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108M03, full insert sequence Length = 1582 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 173 cccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 ||||| || ||||||||||||||||||| || |||||| || |||||| Sbjct: 159 cccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 207
>dbj|AK070277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050D08, full insert sequence Length = 1741 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 173 cccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 ||||| || ||||||||||||||||||| || |||||| || |||||| Sbjct: 159 cccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 207
>gb|AC132147.4| Mus musculus BAC clone RP23-2F11 from 8, complete sequence Length = 237167 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 acaggccatcagcaacagcagcagc 28 ||||| ||||||||||||||||||| Sbjct: 114672 acagggcatcagcaacagcagcagc 114648
>dbj|AK060201.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G04, full insert sequence Length = 1637 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 173 cccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 ||||| || ||||||||||||||||||| || |||||| || |||||| Sbjct: 233 cccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 281
>gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50 of 83 of the complete sequence Length = 304772 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 catcagcaacagcagcagcta 30 ||||||||||||||||||||| Sbjct: 214043 catcagcaacagcagcagcta 214023
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 ctcctcgtcgtcggcattgccgtcg 129 |||||||||||||| |||||||||| Sbjct: 438594 ctcctcgtcgtcgggattgccgtcg 438618
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Minus Query: 173 cccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 ||||| || ||||||||||||||||||| || |||||| || |||||| Sbjct: 23260786 cccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 23260738
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Minus Query: 173 cccggtgacgtacgtgttcggcgactcgatgtcggacgtggggaacaac 221 ||||| || ||||||||||||||||||| || |||||| || |||||| Sbjct: 145713 cccggcgatgtacgtgttcggcgactcgctggtggacgtcggcaacaac 145665
>gb|U73846.1|DMU73846 Drosophila melanogaster testis-specific RNA-binding protein (bruno) mRNA, complete cds Length = 3258 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagct 29 ||||||||||||||||||||| Sbjct: 670 ccatcagcaacagcagcagct 690
>gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, complete sequence Length = 182866 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 gattagcagtaatccatggcagct 95 ||||| |||||||||||||||||| Sbjct: 41522 gattatcagtaatccatggcagct 41545
>ref|NM_105781.1| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting on ester bonds AT1G71120 mRNA, complete cds Length = 1089 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 gggaggttcaccaacgggagaacc 320 ||||||||||||||||| |||||| Sbjct: 208 gggaggttcaccaacggaagaacc 231
>ref|NM_114306.2| Arabidopsis thaliana unknown protein AT3G44380 mRNA, complete cds Length = 698 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 125 catcagcaacagcagcagct 144
>ref|XM_468596.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1191 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgccgccgttcctctccctg 380 |||||||||||||||||||| Sbjct: 34 cgccgccgttcctctccctg 15
>ref|XM_465469.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1014 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 185 cgtgttcggcgactcgatgtcggacgtggggaacaacaac 224 ||||||||||||||||| | ||||| |||||||||||| Sbjct: 114 cgtgttcggcgactcgacggtggacgccgggaacaacaac 153
>ref|XM_463040.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1104 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 192 ggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||||| | ||||||| ||||||||||||||| Sbjct: 133 ggcgactcgcaggcggacgtcgggaacaacaactac 168
>ref|XM_473853.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2337 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 actacttccagctctccctcgcca 246 ||||| |||||||||||||||||| Sbjct: 341 actacctccagctctccctcgcca 364
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 caggccatcagcaacagcagcagctagctagc 36 ||||||| |||| |||||||||||||||||| Sbjct: 137415 caggccagtagcagcagcagcagctagctagc 137446
>gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0109A13, complete sequence Length = 134258 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 tcggcattgccgtcgccgccgcgc 138 ||||||| |||||||||||||||| Sbjct: 51378 tcggcatcgccgtcgccgccgcgc 51355
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 tcggcattgccgtcgccgccgcgc 138 ||||||| |||||||||||||||| Sbjct: 160450 tcggcatcgccgtcgccgccgcgc 160427
>gb|AF172282.1| Oryza sativa adh1-adh2 region Length = 339485 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 cagcaacagcagcagctagctagc 36 ||||| |||||||||||||||||| Sbjct: 42417 cagcagcagcagcagctagctagc 42440
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caggccatcagcaacagcagcagc 28 ||||||||||||| |||||||||| Sbjct: 98921 caggccatcagcagcagcagcagc 98898
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ggccatcagcaacagcagca 26 |||||||||||||||||||| Sbjct: 96362 ggccatcagcaacagcagca 96343
>gb|BT013864.1| Lycopersicon esculentum clone 132844F, mRNA sequence Length = 1829 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 961 ccatcagcaacagcagcagc 980
>ref|XM_978487.1| PREDICTED: Mus musculus similar to KIAA1913 (LOC622645), mRNA Length = 2412 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ggccatcagcaacagcagca 26 |||||||||||||||||||| Sbjct: 795 ggccatcagcaacagcagca 814
>ref|XM_977631.1| PREDICTED: Mus musculus similar to KIAA1913 (LOC674857), mRNA Length = 2280 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ggccatcagcaacagcagca 26 |||||||||||||||||||| Sbjct: 663 ggccatcagcaacagcagca 682
>ref|XM_887086.2| PREDICTED: Mus musculus similar to KIAA1913 (LOC622645), mRNA Length = 2412 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ggccatcagcaacagcagca 26 |||||||||||||||||||| Sbjct: 795 ggccatcagcaacagcagca 814
>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete sequence Length = 131589 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cagcaacagcagcagctagc 32 |||||||||||||||||||| Sbjct: 73597 cagcaacagcagcagctagc 73616
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 192 ggcgactcgatgtcggacgtggggaacaacaactac 227 ||||||||| | ||||||| ||||||||||||||| Sbjct: 17439 ggcgactcgcaggcggacgtcgggaacaacaactac 17474
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tggccgacgacaacttcctc 404 |||||||||||||||||||| Sbjct: 868980 tggccgacgacaacttcctc 868961
>ref|XM_388117.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07941.1) partial mRNA Length = 3108 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 21 ccatcagcaacagcagcagc 40
>ref|XM_814820.1| Trypanosoma cruzi strain CL Brener double-strand-break repair protein (Tc00.1047053506789.130) partial mRNA Length = 1773 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 1300 catcagcaacagcagcagct 1319
>gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037P04, complete sequence Length = 139693 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 cagcaacagcagcagctagctagc 36 ||||| |||||||||||||||||| Sbjct: 106107 cagcagcagcagcagctagctagc 106084
>ref|XM_783194.1| PREDICTED: Strongylocentrotus purpuratus similar to Neuronal acetylcholine receptor protein, alpha-6 subunit precursor (LOC583276), mRNA Length = 1335 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 468 gagtacttctcgttcgacgagcag 491 ||||||||| |||||||||||||| Sbjct: 154 gagtacttcccgttcgacgagcag 177
>emb|AL133269.17| Human DNA sequence from clone RP3-468K3 on chromosome 6q25-26 Contains a beta tubulin pseudogene, complete sequence Length = 90687 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 cacaggccatcagcaacagcagca 26 ||||||||| |||||||||||||| Sbjct: 64162 cacaggccagcagcaacagcagca 64185
>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07, complete sequence Length = 87592 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cgccgccgttcctctccctg 380 |||||||||||||||||||| Sbjct: 65683 cgccgccgttcctctccctg 65702
>emb|X81888.1|MPNARA2S M.persicae mRNA for nicotinic acetylcholine receptor alpha 2 subunit Length = 2339 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 465 gtcgagtacttctcgttcgacgagcaga 492 ||||||||||| ||||||||||||||| Sbjct: 484 gtcgagtactttccgttcgacgagcaga 511
>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence Length = 316613 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cagcaacagcagcagctagc 32 |||||||||||||||||||| Sbjct: 262106 cagcaacagcagcagctagc 262087
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 cgtcgtcggcattgccgtcg 129 |||||||||||||||||||| Sbjct: 2497139 cgtcgtcggcattgccgtcg 2497158
>gb|BT023765.1| Drosophila melanogaster RE18252 full insert cDNA Length = 3550 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 1853 catcagcaacagcagcagct 1872
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cgtcggcattgccgtcgccg 132 |||||||||||||||||||| Sbjct: 118329 cgtcggcattgccgtcgccg 118348
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ggccatcagcaacagcagca 26 |||||||||||||||||||| Sbjct: 1491922 ggccatcagcaacagcagca 1491903
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 actacttccagctctccctcgcca 246 ||||| |||||||||||||||||| Sbjct: 105926 actacctccagctctccctcgcca 105949
>emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7 Length = 82316 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 42253 catcagcaacagcagcagct 42234
>emb|AJ000391.1|LMNACHRA2 Locusta migratoria mRNA for nAChR alpah2 subunit Length = 1578 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 465 gtcgagtacttctcgttcgacgagcaga 492 |||||||||||| | ||||||||||||| Sbjct: 394 gtcgagtacttccccttcgacgagcaga 421
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gcatcgactaccccaacggc 287 |||||||||||||||||||| Sbjct: 6232214 gcatcgactaccccaacggc 6232233
>gb|AC107421.6| Homo sapiens 3 BAC RP11-8J23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160396 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 28261 ccatcagcaacagcagcagc 28280
>ref|NM_168237.1| Drosophila melanogaster PAR-domain protein 1 CG17888-RD, transcript variant D (Pdp1), mRNA Length = 4704 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 1138 ccatcagcaacagcagcagc 1157
>ref|NM_165165.1| Drosophila melanogaster CG5953-RB, transcript variant B (CG5953), mRNA Length = 3796 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 2115 catcagcaacagcagcagct 2134
>ref|NM_135952.1| Drosophila melanogaster CG5953-RA, transcript variant A (CG5953), mRNA Length = 3534 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 1853 catcagcaacagcagcagct 1872
>gb|AC091225.2| Drosophila melanogaster 3L BAC RP98-34B24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174774 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 73475 ccatcagcaacagcagcagc 73456
>gb|AY070526.1| Drosophila melanogaster GH27708 full length cDNA Length = 3095 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 1138 ccatcagcaacagcagcagc 1157
>gb|AF172407.1|AF172407 Drosophila melanogaster PAR domain protein 1 (pdp1) gene, alternative splice products, complete cds Length = 10624 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 2943 ccatcagcaacagcagcagc 2962
>gb|AC093177.1| Drosophila melanogaster, chromosome 2L, region 36A-36B, BAC clone BACR33A07, complete sequence Length = 174726 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 9881 catcagcaacagcagcagct 9900
>gb|BC103347.1| Bos taurus similar to Protein HT031 homolog, mRNA (cDNA clone MGC:127628 IMAGE:7949142), complete cds Length = 2156 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cagcaacagcagcagctagc 32 |||||||||||||||||||| Sbjct: 368 cagcaacagcagcagctagc 387
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ggccatcagcaacagcagca 26 |||||||||||||||||||| Sbjct: 1075894 ggccatcagcaacagcagca 1075875
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 cagcaacagcagcagctagctagc 36 ||||| |||||||||||||||||| Sbjct: 5633547 cagcagcagcagcagctagctagc 5633524
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 caggccatcagcaacagcagcagc 28 ||||||||||||| |||||||||| Sbjct: 19503514 caggccatcagcagcagcagcagc 19503491
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 407 cggcgtcaacttcgcgtctggtggcgccggcattct 442 ||||||||||| |||||| || |||||||| ||||| Sbjct: 28170737 cggcgtcaactacgcgtcaggaggcgccgggattct 28170702
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 tcggcattgccgtcgccgccgcgc 138 ||||||| |||||||||||||||| Sbjct: 14825036 tcggcatcgccgtcgccgccgcgc 14825013
>gb|AC007185.12|AC007185 Drosophila melanogaster, chromosome 2L, region 36A-, BAC clone BACR44N04, complete sequence Length = 190651 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 53134 catcagcaacagcagcagct 53115
>emb|BX817830.1|CNS0AAXM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL43ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 798 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 429 catcagcaacagcagcagct 410
>emb|BX826234.1|CNS0A7BS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL93ZA05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 631 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 108 catcagcaacagcagcagct 127
>gb|AC016972.7|AC016972 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence Length = 66653 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 gggaggttcaccaacgggagaacc 320 ||||||||||||||||| |||||| Sbjct: 46969 gggaggttcaccaacggaagaacc 46946
>ref|XM_576993.1| PREDICTED: Rattus norvegicus similar to Nono protein (LOC501589), mRNA Length = 2578 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 369 ccatcagcaacagcagcagc 388
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 407 cggcgtcaacttcgcgtctggtggcgccggcattct 442 ||||||||||| |||||| || |||||||| ||||| Sbjct: 26282 cggcgtcaactacgcgtcaggaggcgccgggattct 26247
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 407 cggcgtcaacttcgcgtctggtggcgccggcattct 442 ||||||||||| |||||| || |||||||| ||||| Sbjct: 154033 cggcgtcaactacgcgtcaggaggcgccgggattct 153998
>dbj|AP005650.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078K05 Length = 162901 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 185 cgtgttcggcgactcgatgtcggacgtggggaacaacaac 224 ||||||||||||||||| | ||||| |||||||||||| Sbjct: 81263 cgtgttcggcgactcgacggtggacgccgggaacaacaac 81302
>dbj|AK120898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030I02, full insert sequence Length = 2788 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 actacttccagctctccctcgcca 246 ||||| |||||||||||||||||| Sbjct: 479 actacctccagctctccctcgcca 502
>emb|X55521.1|SMMESM6 Serratia marcescens metalloprotease gene Length = 3871 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 caggccatcagcaacagcagcagc 28 ||||||| |||||||||||||||| Sbjct: 2621 caggccaacagcaacagcagcagc 2644
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gcatcgactaccccaacggc 287 |||||||||||||||||||| Sbjct: 5139473 gcatcgactaccccaacggc 5139492
>dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G04, full insert sequence Length = 1666 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 407 cggcgtcaacttcgcgtctggtggcgccggcattct 442 ||||||||||| |||||| || |||||||| ||||| Sbjct: 492 cggcgtcaactacgcgtcaggaggcgccgggattct 527
>gb|BC089880.1| Rattus norvegicus non-POU domain containing, octamer-binding, mRNA (cDNA clone MGC:109026 IMAGE:7366190), complete cds Length = 2438 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 205 ccatcagcaacagcagcagc 224
>emb|X16365.1|SCSFL2 Yeast suppressor gene for flocculation SFL2, put. identical to TUP1 gene Length = 2444 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cagcaacagcagcagctagc 32 |||||||||||||||||||| Sbjct: 399 cagcaacagcagcagctagc 418
>gb|AE003651.2| Drosophila melanogaster chromosome 2L, section 60 of 83 of the complete sequence Length = 254646 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 catcagcaacagcagcagct 29 |||||||||||||||||||| Sbjct: 149511 catcagcaacagcagcagct 149492
>gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28 of 83 of the complete sequence Length = 287988 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 67627 ccatcagcaacagcagcagc 67608
>gb|AC116474.13| Mus musculus chromosome 17, clone RP23-386F9, complete sequence Length = 221805 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ggccatcagcaacagcagca 26 |||||||||||||||||||| Sbjct: 25185 ggccatcagcaacagcagca 25204
>emb|CT573017.5| Mouse DNA sequence from clone RP24-309J23 on chromosome 17, complete sequence Length = 157643 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ggccatcagcaacagcagca 26 |||||||||||||||||||| Sbjct: 80731 ggccatcagcaacagcagca 80750
>gb|AF073154.1|AF073154 Hepatitis C virus clone ADS11C13 polyprotein gene, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cccggtgacgtacgtgttcg 192 |||||||||||||||||||| Sbjct: 84 cccggtgacgtacgtgttcg 65
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 cagcaacagcagcagctagctagc 36 ||||| |||||||||||||||||| Sbjct: 5700024 cagcagcagcagcagctagctagc 5700001
>ref|NM_001035481.1| Bos taurus similar to Protein HT031 homolog (MGC127628), mRNA Length = 2156 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cagcaacagcagcagctagc 32 |||||||||||||||||||| Sbjct: 368 cagcaacagcagcagctagc 387
>gb|DQ282123.1| Verticillium dahliae 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 652 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ggttcaccaacgggagaacc 320 |||||||||||||||||||| Sbjct: 128 ggttcaccaacgggagaacc 109
>ref|NM_001012356.1| Rattus norvegicus non-POU domain containing, octamer-binding (Nono), mRNA Length = 2438 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 205 ccatcagcaacagcagcagc 224
>gb|M35861.1|YSCAER2 S.cerevisiae heme-regulated and catabolite repressed genes repressor (TUP1) gene, complete cds Length = 2551 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cagcaacagcagcagctagc 32 |||||||||||||||||||| Sbjct: 586 cagcaacagcagcagctagc 605
>dbj|AB013619.1| Halocynthia roretzi mRNA for As-mT, complete cds Length = 3801 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccatcagcaacagcagcagc 28 |||||||||||||||||||| Sbjct: 288 ccatcagcaacagcagcagc 307
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cgccgccgttcctctccctg 380 |||||||||||||||||||| Sbjct: 69924 cgccgccgttcctctccctg 69943 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,466,433 Number of Sequences: 3902068 Number of extensions: 3466433 Number of successful extensions: 104605 Number of sequences better than 10.0: 127 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101853 Number of HSP's gapped (non-prelim): 2750 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
