>R1A3_SOLDE (Q6L440) Putative late blight resistance protein homolog R1A-3|
          Length = 760

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
 Frame = +1

Query: 310 ATLGGKLPFDDASVGSVLSVI-KNVESFGDKLVAEISRVLKAGGIVLAQSFTPSTDQKP- 483
           A L GKLP     V   LS + K VESF +  V +ISR+++   + +++SF  S++ +  
Sbjct: 211 AKLCGKLPLSIVFVAGTLSEMEKEVESFLEDRVIDISRLIR---LWISESFIKSSEGRSL 267

Query: 484 --------NNYIERQLLM 513
                    N I R L+M
Sbjct: 268 EDIAEGYLENLIGRNLVM 285

>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4641

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 69   PSGPAAIAVRSSDPHLPSPPSRSQGPQAVRFDPIRSRS 182
            PSG  A + RSS PH  + P +S  P   + DP R RS
Sbjct: 2796 PSG--ASSPRSSSPHDKNLPQKSTAPVKTKLDPPRERS 2831

>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa|
           retinoblastoma-associated protein) (PRB1) (P107)
          Length = 1068

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
 Frame = +1

Query: 280 REEVVVITQCATLGGKLPFDDASVGSVLSVIKNVESFGDKL-----------VAEISRVL 426
           RE+  VIT  A+    +    + + S+++ +KN  S  D+L           V  I ++L
Sbjct: 378 REKEAVITPVASATQSV----SRLQSIVAGLKNAPS--DQLINIFESCVRNPVENIMKIL 431

Query: 427 KAGGIVLAQSFTPSTDQKPNNYIE 498
           K  G    Q +T STD++P ++I+
Sbjct: 432 KGIGETFCQHYTQSTDEQPGSHID 455

>COQ5_DROME (Q9VYF8) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 301

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 295 VITQCATLGGKLPFDDASVGS--VLSVIKNVESFGDKLVAEISRVLKAGGIVLAQSFTPS 468
           V  QCA    KLPF DAS  +  +   I+N     DK+++E  RVL+ GG  +   F+  
Sbjct: 167 VAWQCAD-AEKLPFPDASFTAYTIAFGIRNCTHV-DKVLSEAYRVLQPGGRFMCLEFSHL 224

Query: 469 TDQ 477
           T++
Sbjct: 225 TNE 227

>CP3A4_HUMAN (P08684) Cytochrome P450 3A4 (EC 1.14.13.67) (Quinine|
           3-monooxygenase) (CYPIIIA4) (Nifedipine oxidase)
           (Taurochenodeoxycholate 6-alpha-hydroxylase) (EC
           1.14.13.97) (NF-25) (P450-PCN1)
          Length = 502

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +3

Query: 348 RGFCSF---CHKKCGELWG 395
           +GFC F   CHKK G++WG
Sbjct: 54  KGFCMFDMECHKKYGKVWG 72

>RRMA_ECOLI (P36999) Ribosomal RNA large subunit methyltransferase A (EC|
           2.1.1.51) (rRNA (guanine-N(1)-)-methyltransferase) (23S
           rRNA m1G745 methyltransferase)
          Length = 269

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 298 ITQCATLGGKLPFDDASVGSVLSVIKNVESFGDKLVAEISRVLKAGGIVLAQSFTP 465
           +T C     +LPF D S+ +++ +      +      E++RV+K GG V+  +  P
Sbjct: 132 VTFCVASSHRLPFSDTSMDAIIRI------YAPCKAEELARVVKPGGWVITATPGP 181

>CP3A3_HUMAN (P05184) Cytochrome P450 3A3 (EC 1.14.14.1) (CYPIIIA3) (HLp)|
          Length = 503

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +3

Query: 348 RGFCSF---CHKKCGELWG 395
           +GFC F   CHKK G++WG
Sbjct: 54  KGFCMFDMECHKKYGKVWG 72


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,492,298
Number of Sequences: 219361
Number of extensions: 1097713
Number of successful extensions: 3148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3148
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)