Clone Name | bart28f12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK071766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H09, full insert sequence Length = 1447 Score = 593 bits (299), Expect = e-166 Identities = 397/427 (92%), Gaps = 2/427 (0%) Strand = Plus / Plus Query: 93 caagttcctcatctacggccgcaccggctggatcgggggtctcctcggcaagctctgcac 152 ||||||||||||||||||||| ||||| ||||||||||| || |||||| |||||||| | Sbjct: 186 caagttcctcatctacggccggaccgggtggatcgggggcctgctcggccagctctgcgc 245 Query: 153 cgcgcagggcatccccttcgcctacggcgccggccgcctcgagaaccgcgcccagctcga 212 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 246 cgcgcggggcatccccttcgcctacggcgccgggcgcctcgagaaccgcgcccagctcga 305 Query: 213 ggccgacatcgacgaggtcgcgcccacgcacgtcttcaacgccgcgggcgtcaccggccg 272 | ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 306 gaccgacatcgacgaggtcgcgcccacccacgtgttcaatgccgcgggggtcaccggccg 365 Query: 273 ccccaacgtcgactggtgcgagacccaccgcgtcgagaccatccgcgccaacgtctgcgg 332 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 366 ccccaacgtcgactggtgcgagacccaccgcaccgagaccatccgcgccaacgtctgcgg 425 Query: 333 cacgctcacgctcgccgacgtctgccgcgcccggggcctcgtgctcatcaactacgccac 392 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 426 cacgcttacgctcgccgacgtctgccgcgcccgcggcctcgtgctcatcaactacgccac 485 Query: 393 gggctgcatcttcgagtacgacgcggcccacccgctcggctcgggggtcgggttcaagga 452 |||||||||||||||||||||||| | ||||| ||||||| | ||| ||||||||||||| Sbjct: 486 gggctgcatcttcgagtacgacgccggccaccagctcggcacagggatcgggttcaagga 545 Query: 453 ggaggacacccctaacttcgttggatccttctnactcc-aaacaaaggccatggttgagg 511 ||||||||| || |||||||| ||||| |||| ||||| |||| |||||||||||||||| Sbjct: 546 ggaggacacgcccaacttcgtcggatcattct-actccaaaaccaaggccatggttgagg 604 Query: 512 aactgct 518 ||||||| Sbjct: 605 aactgct 611
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 569 bits (287), Expect = e-159 Identities = 385/415 (92%), Gaps = 2/415 (0%) Strand = Plus / Plus Query: 93 caagttcctcatctacggccgcaccggctggatcgggggtctcctcggcaagctctgcac 152 ||||||||||||||||||||| ||||| ||||||||||| || |||||| |||||||| | Sbjct: 27728062 caagttcctcatctacggccggaccgggtggatcgggggcctgctcggccagctctgcgc 27728121 Query: 153 cgcgcagggcatccccttcgcctacggcgccggccgcctcgagaaccgcgcccagctcga 212 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27728122 cgcgcggggcatccccttcgcctacggcgccgggcgcctcgagaaccgcgcccagctcga 27728181 Query: 213 ggccgacatcgacgaggtcgcgcccacgcacgtcttcaacgccgcgggcgtcaccggccg 272 | ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 27728182 gaccgacatcgacgaggtcgcgcccacccacgtgttcaatgccgcgggggtcaccggccg 27728241 Query: 273 ccccaacgtcgactggtgcgagacccaccgcgtcgagaccatccgcgccaacgtctgcgg 332 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 27728242 ccccaacgtcgactggtgcgagacccaccgcaccgagaccatccgcgccaacgtctgcgg 27728301 Query: 333 cacgctcacgctcgccgacgtctgccgcgcccggggcctcgtgctcatcaactacgccac 392 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27728302 cacgcttacgctcgccgacgtctgccgcgcccgcggcctcgtgctcatcaactacgccac 27728361 Query: 393 gggctgcatcttcgagtacgacgcggcccacccgctcggctcgggggtcgggttcaagga 452 |||||||||||||||||||||||| | ||||| ||||||| | ||| ||||||||||||| Sbjct: 27728362 gggctgcatcttcgagtacgacgccggccaccagctcggcacagggatcgggttcaagga 27728421 Query: 453 ggaggacacccctaacttcgttggatccttctnactcc-aaacaaaggccatggt 506 ||||||||| || |||||||| ||||| |||| ||||| |||| ||||||||||| Sbjct: 27728422 ggaggacacgcccaacttcgtcggatcattct-actccaaaaccaaggccatggt 27728475 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tctcctcggcaagctctgca 151 |||||||||||||||||||| Sbjct: 11783894 tctcctcggcaagctctgca 11783913
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 569 bits (287), Expect = e-159 Identities = 385/415 (92%), Gaps = 2/415 (0%) Strand = Plus / Plus Query: 93 caagttcctcatctacggccgcaccggctggatcgggggtctcctcggcaagctctgcac 152 ||||||||||||||||||||| ||||| ||||||||||| || |||||| |||||||| | Sbjct: 13395 caagttcctcatctacggccggaccgggtggatcgggggcctgctcggccagctctgcgc 13454 Query: 153 cgcgcagggcatccccttcgcctacggcgccggccgcctcgagaaccgcgcccagctcga 212 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 13455 cgcgcggggcatccccttcgcctacggcgccgggcgcctcgagaaccgcgcccagctcga 13514 Query: 213 ggccgacatcgacgaggtcgcgcccacgcacgtcttcaacgccgcgggcgtcaccggccg 272 | ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 13515 gaccgacatcgacgaggtcgcgcccacccacgtgttcaatgccgcgggggtcaccggccg 13574 Query: 273 ccccaacgtcgactggtgcgagacccaccgcgtcgagaccatccgcgccaacgtctgcgg 332 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 13575 ccccaacgtcgactggtgcgagacccaccgcaccgagaccatccgcgccaacgtctgcgg 13634 Query: 333 cacgctcacgctcgccgacgtctgccgcgcccggggcctcgtgctcatcaactacgccac 392 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 13635 cacgcttacgctcgccgacgtctgccgcgcccgcggcctcgtgctcatcaactacgccac 13694 Query: 393 gggctgcatcttcgagtacgacgcggcccacccgctcggctcgggggtcgggttcaagga 452 |||||||||||||||||||||||| | ||||| ||||||| | ||| ||||||||||||| Sbjct: 13695 gggctgcatcttcgagtacgacgccggccaccagctcggcacagggatcgggttcaagga 13754 Query: 453 ggaggacacccctaacttcgttggatccttctnactcc-aaacaaaggccatggt 506 ||||||||| || |||||||| ||||| |||| ||||| |||| ||||||||||| Sbjct: 13755 ggaggacacgcccaacttcgtcggatcattct-actccaaaaccaaggccatggt 13808
>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04 Length = 140723 Score = 569 bits (287), Expect = e-159 Identities = 385/415 (92%), Gaps = 2/415 (0%) Strand = Plus / Plus Query: 93 caagttcctcatctacggccgcaccggctggatcgggggtctcctcggcaagctctgcac 152 ||||||||||||||||||||| ||||| ||||||||||| || |||||| |||||||| | Sbjct: 113928 caagttcctcatctacggccggaccgggtggatcgggggcctgctcggccagctctgcgc 113987 Query: 153 cgcgcagggcatccccttcgcctacggcgccggccgcctcgagaaccgcgcccagctcga 212 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 113988 cgcgcggggcatccccttcgcctacggcgccgggcgcctcgagaaccgcgcccagctcga 114047 Query: 213 ggccgacatcgacgaggtcgcgcccacgcacgtcttcaacgccgcgggcgtcaccggccg 272 | ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 114048 gaccgacatcgacgaggtcgcgcccacccacgtgttcaatgccgcgggggtcaccggccg 114107 Query: 273 ccccaacgtcgactggtgcgagacccaccgcgtcgagaccatccgcgccaacgtctgcgg 332 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 114108 ccccaacgtcgactggtgcgagacccaccgcaccgagaccatccgcgccaacgtctgcgg 114167 Query: 333 cacgctcacgctcgccgacgtctgccgcgcccggggcctcgtgctcatcaactacgccac 392 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 114168 cacgcttacgctcgccgacgtctgccgcgcccgcggcctcgtgctcatcaactacgccac 114227 Query: 393 gggctgcatcttcgagtacgacgcggcccacccgctcggctcgggggtcgggttcaagga 452 |||||||||||||||||||||||| | ||||| ||||||| | ||| ||||||||||||| Sbjct: 114228 gggctgcatcttcgagtacgacgccggccaccagctcggcacagggatcgggttcaagga 114287 Query: 453 ggaggacacccctaacttcgttggatccttctnactcc-aaacaaaggccatggt 506 ||||||||| || |||||||| ||||| |||| ||||| |||| ||||||||||| Sbjct: 114288 ggaggacacgcccaacttcgtcggatcattct-actccaaaaccaaggccatggt 114341
>gb|AY104924.1| Zea mays PCO065449 mRNA sequence Length = 1135 Score = 496 bits (250), Expect = e-137 Identities = 396/442 (89%), Gaps = 2/442 (0%) Strand = Plus / Plus Query: 84 gccggcgctcaagttcctcatctacggccgcaccggctggatcgggggtctcctcggcaa 143 ||||||||||||||||||||||||||||||||| |||||||||||||| || || ||| Sbjct: 213 gccggcgctcaagttcctcatctacggccgcacgggctggatcggggggctgctgggcgg 272 Query: 144 gctctgcaccgcgcagggcatccccttcgcctacggcgccggccgcctcgagaaccgcgc 203 |||||| |||||| || |||||||||| ||||||||||||| | |||||||||||||| Sbjct: 273 cctctgcgccgcgcgcgggatccccttcgtctacggcgccggcaggctcgagaaccgcgc 332 Query: 204 ccagctcgaggccgacatcgacgaggtcgcgcccacgcacgtcttcaacgccgcgggcgt 263 ||||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||| Sbjct: 333 ccagctcgaggccgacatcgacgccgccgcgcccacccacgtgttcaacgccgcgggcgt 392 Query: 264 caccggccgccccaacgtcgactggtgcgagacccaccgcgtcgagaccatccgcgccaa 323 ||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 393 cacgggccgccccaacgtcgactggtgcgagacgcaccgcgccgagaccatccgcgccaa 452 Query: 324 cgtctgcggcacgctcacgctcgccgacgtctgccgcgcccggggcctcgtgctcatcaa 383 |||| ||||||||||||||||||||| ||||||| | ||| || || |||||||||| Sbjct: 453 cgtcgtgggcacgctcacgctcgccgacatctgccggggccgaggggtcctgctcatcaa 512 Query: 384 ctacgccacgggctgcatcttcgagtacgacgcggcccacccgctcggctcgggggtcgg 443 ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| Sbjct: 513 ctacgccacgggctgcatcttcgagtacgacgccggccacccgctcggctccggggtcgg 572 Query: 444 gttcaaggaggaggacacccctaacttcgttggatccttctnactcc-aaacaaaggcca 502 ||||||||||||||||| || |||||||| ||||| |||| ||||| |||| ||||||| Sbjct: 573 cttcaaggaggaggacacgcccaacttcgtcggatcattct-actccaaaaccaaggcca 631 Query: 503 tggttgaggaactgctgaagaa 524 |||| |||||| |||| ||||| Sbjct: 632 tggtagaggaattgctcaagaa 653
>gb|AF051236.1|AF051236 Picea mariana hypothetical protein (Sb50) mRNA, partial cds Length = 1139 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 234 gcccacgcacgtcttcaacgccgcgggcgtcaccggccgccccaacgtcgactggtgcga 293 |||||| ||||| ||||| |||||||| |||||||| ||||| || || ||||||||||| Sbjct: 95 gcccactcacgttttcaatgccgcgggtgtcaccggtcgcccgaatgtggactggtgcga 154 Query: 294 gacccac 300 | ||||| Sbjct: 155 gtcccac 161 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 367 ggcctcgtgctcatcaactacgccacgggctgcatcttcgagtacgacg 415 |||||| | |||||||| ||||||||||| ||||| |||||||| |||| Sbjct: 228 ggcctcattctcatcaattacgccacgggttgcattttcgagtatgacg 276 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 496 aaggccatggttgaggaactgctgaagaa 524 |||||||||||||| || ||||||||||| Sbjct: 357 aaggccatggttgaagatctgctgaagaa 385
>ref|XM_324277.1| Neurospora crassa OR74A predicted protein (NCU04921.1) partial mRNA Length = 1263 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 170 tcgcctacggcgccggccgcctc 192 ||||||||||||||||||||||| Sbjct: 233 tcgcctacggcgccggccgcctc 255
>ref|XM_954276.1| Neurospora crassa OR74A hypothetical protein (NCU04921.1) partial mRNA Length = 1263 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 170 tcgcctacggcgccggccgcctc 192 ||||||||||||||||||||||| Sbjct: 233 tcgcctacggcgccggccgcctc 255
>gb|AY947889.1| Streptomyces hygroscopicus strain AM 3672 herbimycin polyketide biosynthetic gene cluster, complete sequence Length = 86941 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 ccgcgcccagctcgaggccgac 219 |||||||||||||||||||||| Sbjct: 6109 ccgcgcccagctcgaggccgac 6088
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 98 tcctcatctacggccgcaccggctggatcg 127 ||||||||| ||||||||||| |||||||| Sbjct: 122229 tcctcatcttcggccgcaccgactggatcg 122200
>gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179931 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 15 cccccgttcccactcccctccc 36 |||||||||||||||||||||| Sbjct: 28234 cccccgttcccactcccctccc 28213
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 197 accgcgcccagctcgaggccga 218 |||||||||||||||||||||| Sbjct: 1783815 accgcgcccagctcgaggccga 1783836
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 332 gcacgctcacgctcgccgacgt 353 |||||||||||||||||||||| Sbjct: 4789140 gcacgctcacgctcgccgacgt 4789119 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 tcgccgacgtctgccgcgcc 363 |||||||||||||||||||| Sbjct: 1958855 tcgccgacgtctgccgcgcc 1958874
>gb|AC102739.7| Mus musculus chromosome 5, clone RP24-309H3, complete sequence Length = 191542 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 491 aaacaaaggccatggttgagg 511 ||||||||||||||||||||| Sbjct: 136101 aaacaaaggccatggttgagg 136121
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 gctcgaggccgacatcgacga 227 ||||||||||||||||||||| Sbjct: 212161 gctcgaggccgacatcgacga 212181
>ref|XM_364393.1| Magnaporthe grisea 70-15 hypothetical protein (MG09238.4) partial mRNA Length = 879 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 cccaacgtcgactggtgcgag 294 ||||||||||||||||||||| Sbjct: 193 cccaacgtcgactggtgcgag 213
>ref|XM_853462.1| PREDICTED: Canis familiaris similar to CG18004-PA, isoform A, transcript variant 4 (LOC489944), mRNA Length = 1225 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacgg 110 ||||||||||||||||||||| Sbjct: 121 gctcaagttcctcatctacgg 141
>dbj|AK164131.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530045F09 product:unclassifiable, full insert sequence Length = 2600 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 491 aaacaaaggccatggttgagg 511 ||||||||||||||||||||| Sbjct: 963 aaacaaaggccatggttgagg 983
>gb|AY849702.1| Magnaporthe grisea unknown mRNA Length = 1090 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 cccaacgtcgactggtgcgag 294 ||||||||||||||||||||| Sbjct: 272 cccaacgtcgactggtgcgag 292
>ref|XM_523335.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ90652 (LOC467942), mRNA Length = 810 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 63 gctcaagttcctcatctacg 82
>ref|XM_481578.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2289 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 cgcacgtcttcaacgccgcgggcg 262 ||||||||||||||||||| |||| Sbjct: 1007 cgcacgtcttcaacgccgccggcg 1030
>ref|XM_865473.1| PREDICTED: Bos taurus similar to zinc finger and BTB domain containing 36 (LOC614110), mRNA Length = 1938 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cgcgcccagctcgaggccga 218 |||||||||||||||||||| Sbjct: 1676 cgcgcccagctcgaggccga 1695
>ref|NM_173618.1| Homo sapiens coiled-coil domain containing 95 (CCDC95), mRNA Length = 1185 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 164 gctcaagttcctcatctacg 183
>gb|AY189289.1| Homo sapiens LP9167 protein mRNA, complete cds Length = 3226 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 100 gctcaagttcctcatctacg 119
>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12 Length = 306650 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 cgcccggggcctcgtgctca 379 |||||||||||||||||||| Sbjct: 158925 cgcccggggcctcgtgctca 158944
>ref|XM_853551.1| PREDICTED: Canis familiaris similar to CG18004-PA, isoform A, transcript variant 5 (LOC489944), mRNA Length = 1243 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 124 gctcaagttcctcatctacg 143
>ref|XM_844283.1| PREDICTED: Canis familiaris similar to CG18004-PA, isoform A, transcript variant 3 (LOC489944), mRNA Length = 1021 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 115 gctcaagttcctcatctacg 134
>ref|XM_547064.2| PREDICTED: Canis familiaris similar to CG18004-PA, isoform A, transcript variant 1 (LOC489944), mRNA Length = 1147 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 124 gctcaagttcctcatctacg 143
>gb|BC047712.2| Homo sapiens coiled-coil domain containing 95, mRNA (cDNA clone MGC:52012 IMAGE:6155713), complete cds Length = 1161 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 126 gctcaagttcctcatctacg 145
>gb|BC035693.1| Homo sapiens coiled-coil domain containing 95, mRNA (cDNA clone IMAGE:5759915) Length = 1974 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 123 gctcaagttcctcatctacg 142
>emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on chromosome 10 Contains part of the CACNB2 gene for calcium channel voltage-dependent beta 2 subunit and a novel gene, complete sequence Length = 177656 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ccctcccggatctccccatt 49 |||||||||||||||||||| Sbjct: 97402 ccctcccggatctccccatt 97421
>ref|XM_774967.1| PREDICTED: Strongylocentrotus purpuratus similar to Aminopeptidase N (hAPN) (Alanyl aminopeptidase) (Microsomal aminopeptidase) (Aminopeptidase M) (gp150) (Myeloid plasma membrane glycoprotein CD13) (LOC574617), mRNA Length = 2916 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tcgagaaccgcgcccagctc 210 |||||||||||||||||||| Sbjct: 1952 tcgagaaccgcgcccagctc 1971
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 cacgctcacgctcgccgacg 352 |||||||||||||||||||| Sbjct: 4274509 cacgctcacgctcgccgacg 4274490
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cggccgcaccggctggatcg 127 |||||||||||||||||||| Sbjct: 94270 cggccgcaccggctggatcg 94251
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 cgcctacggcgccggccgcctcga 194 ||||||||||| |||||||||||| Sbjct: 1560965 cgcctacggcggcggccgcctcga 1560988
>emb|AL583925.1|MLEPRTN9 Mycobacterium leprae strain TN complete genome; segment 9/10 Length = 308950 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcgcccagctcgaggccgac 219 |||||||||||||||||||| Sbjct: 224789 gcgcccagctcgaggccgac 224808
>emb|CR626828.1| full-length cDNA clone CS0DI015YI05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1412 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 128 gctcaagttcctcatctacg 147
>emb|CR620749.1| full-length cDNA clone CS0DK011YI15 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1599 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 664 gctcaagttcctcatctacg 683
>emb|CR620186.1| full-length cDNA clone CS0DC005YO01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1170 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 165 gctcaagttcctcatctacg 184
>emb|CR618846.1| full-length cDNA clone CS0DI001YD02 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1489 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 659 gctcaagttcctcatctacg 678
>emb|CR617333.1| full-length cDNA clone CS0DA003YI09 of Neuroblastoma of Homo sapiens (human) Length = 1384 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 106 gctcaagttcctcatctacg 125
>dbj|AK075133.1| Homo sapiens cDNA FLJ90652 fis, clone PLACE1004492, weakly similar to VERPROLIN Length = 1185 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 164 gctcaagttcctcatctacg 183
>emb|CR597344.1| full-length cDNA clone CS0DC016YN21 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1171 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 163 gctcaagttcctcatctacg 182
>emb|CR596765.1| full-length cDNA clone CS0DI018YD15 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1113 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 128 gctcaagttcctcatctacg 147
>emb|CR596568.1| full-length cDNA clone CS0DI014YI03 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1169 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 163 gctcaagttcctcatctacg 182
>emb|CR592458.1| full-length cDNA clone CS0DL004YI11 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1188 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 106 gctcaagttcctcatctacg 125
>emb|CR592457.1| full-length cDNA clone CS0DL004YI12 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1180 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 106 gctcaagttcctcatctacg 125
>emb|CR591225.1| full-length cDNA clone CS0DC024YE10 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1144 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 146 gctcaagttcctcatctacg 165
>gb|AC090797.5| Homo sapiens chromosome 8, clone RP11-586K2, complete sequence Length = 193929 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 494 caaaggccatggttgaggaactgc 517 ||||| |||||||||||||||||| Sbjct: 159080 caaagtccatggttgaggaactgc 159103
>gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, complete genome Length = 190289 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 catcgacgaggtcgcgcccacgca 242 |||||||||||||||| ||||||| Sbjct: 127014 catcgacgaggtcgcgtccacgca 126991
>gb|AC027259.8| Homo sapiens, clone RP11-74D11, complete sequence Length = 133807 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 494 caaaggccatggttgaggaactgc 517 ||||| |||||||||||||||||| Sbjct: 120856 caaagtccatggttgaggaactgc 120833
>gb|AC093512.2| Homo sapiens chromosome 16 clone CTD-2515O10, complete sequence Length = 157481 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 64423 gctcaagttcctcatctacg 64442
>gb|AF262979.1|AF262979 Triticum aestivum protein disulfide isomerase 1 precursor (PDI1) mRNA, complete cds Length = 1784 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttccgccatggcgatctcca 67 |||||||||||||||||||| Sbjct: 19 ttccgccatggcgatctcca 38
>gb|U86933.1|MCU86933 Molluscum contagiosum virus subtype 1 clone H1-36 genomic sequence Length = 531 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 catcgacgaggtcgcgcccacgca 242 |||||||||||||||| ||||||| Sbjct: 148 catcgacgaggtcgcgtccacgca 125
>emb|AL113886.1|CNS01B7Q Botrytis cinerea strain T4 cDNA library Length = 720 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 cgccccaacgtcgactggtgcgag 294 |||||||||||||| ||||||||| Sbjct: 250 cgccccaacgtcgattggtgcgag 273
>emb|AL112540.1|CNS01A6C Botrytis cinerea strain T4 cDNA library Length = 636 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 cgccccaacgtcgactggtgcgag 294 |||||||||||||| ||||||||| Sbjct: 206 cgccccaacgtcgattggtgcgag 229
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tctcctcggcaagctctgca 151 |||||||||||||||||||| Sbjct: 11584234 tctcctcggcaagctctgca 11584215
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 cgcacgtcttcaacgccgcgggcg 262 ||||||||||||||||||| |||| Sbjct: 13931944 cgcacgtcttcaacgccgccggcg 13931921
>gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinostaticus neocarzinostatin biosynthetic locus, complete sequence Length = 92294 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gccgacatcgacgaggtcgc 233 |||||||||||||||||||| Sbjct: 45542 gccgacatcgacgaggtcgc 45523
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cgaggccgacatcgacgagg 229 |||||||||||||||||||| Sbjct: 3167142 cgaggccgacatcgacgagg 3167161
>dbj|AP004561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0465H09 Length = 148590 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 cgcacgtcttcaacgccgcgggcg 262 ||||||||||||||||||| |||| Sbjct: 139663 cgcacgtcttcaacgccgccggcg 139640
>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0477B05 Length = 142166 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tctcctcggcaagctctgca 151 |||||||||||||||||||| Sbjct: 91784 tctcctcggcaagctctgca 91803
>dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1136_D12 Length = 105521 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 cgcacgtcttcaacgccgcgggcg 262 ||||||||||||||||||| |||| Sbjct: 76339 cgcacgtcttcaacgccgccggcg 76316
>dbj|AK121257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102I03, full insert sequence Length = 2879 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 cgcacgtcttcaacgccgcgggcg 262 ||||||||||||||||||| |||| Sbjct: 1512 cgcacgtcttcaacgccgccggcg 1535
>dbj|AK130409.1| Homo sapiens cDNA FLJ26899 fis, clone RCT00549 Length = 1179 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 156 gctcaagttcctcatctacg 175
>ref|XM_312790.2| Anopheles gambiae str. PEST ENSANGP00000003181 (ENSANGG00000002575), partial mRNA Length = 2799 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cggccgcaccggctggatcg 127 |||||||||||||||||||| Sbjct: 1902 cggccgcaccggctggatcg 1921
>emb|AJ325619.1|HSA325619 Homo sapiens genomic sequence surrounding NotI site, clone NB6-204C Length = 917 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 114 gctcaagttcctcatctacg 95
>dbj|AK072608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134K04, full insert sequence Length = 2599 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 cgcacgtcttcaacgccgcgggcg 262 ||||||||||||||||||| |||| Sbjct: 1237 cgcacgtcttcaacgccgccggcg 1260
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 179 gcgccggccgcctcgagaaccgcg 202 |||||||||||||| ||||||||| Sbjct: 241047 gcgccggccgcctctagaaccgcg 241070
>emb|AJ868105.1| Triticum aestivum subsp. aestivum mRNA for protein disulfide isomerase (PDI gene), clone CPDI-4A Length = 1745 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttccgccatggcgatctcca 67 |||||||||||||||||||| Sbjct: 26 ttccgccatggcgatctcca 45
>emb|AJ868102.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide isomerase, exons 1-10, clone GPDI-4A Length = 3561 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttccgccatggcgatctcca 67 |||||||||||||||||||| Sbjct: 26 ttccgccatggcgatctcca 45
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tctcctcggcaagctctgca 151 |||||||||||||||||||| Sbjct: 11583905 tctcctcggcaagctctgca 11583886
>emb|AL772424.5|CNS08CA2 Oryza sativa chromosome 12, . BAC OJ1118_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108927 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tctcctcggcaagctctgca 151 |||||||||||||||||||| Sbjct: 76594 tctcctcggcaagctctgca 76613
>gb|L33251.1|BLYPDIB Hordeum vulgare disulfide isomerase (PDI) mRNA, complete cds Length = 1772 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttccgccatggcgatctcca 67 |||||||||||||||||||| Sbjct: 15 ttccgccatggcgatctcca 34
>gb|L33250.1|BLYPDIA Hordeum vulgare disulfide isomerase (PDI) mRNA, complete cds Length = 1816 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttccgccatggcgatctcca 67 |||||||||||||||||||| Sbjct: 4 ttccgccatggcgatctcca 23
>gb|U11496.1|TAU11496 Triticum aestivum Chinese spring protein disulfide isomerase (PDI) mRNA, complete cds Length = 1796 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttccgccatggcgatctcca 67 |||||||||||||||||||| Sbjct: 30 ttccgccatggcgatctcca 49
>gb|U00018.1|U00018 Mycobacterium leprae cosmid B2168 Length = 42991 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcgcccagctcgaggccgac 219 |||||||||||||||||||| Sbjct: 36375 gcgcccagctcgaggccgac 36394
>dbj|AB044351.1| Pseudomonas syringae plasmid pPaCu1 ORFE, ORFF genes, complete cds Length = 4800 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 aggtcgcgcccacgcacgtc 246 |||||||||||||||||||| Sbjct: 4086 aggtcgcgcccacgcacgtc 4067
>dbj|AK074137.1| Homo sapiens mRNA for FLJ00210 protein Length = 4469 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gctcaagttcctcatctacg 109 |||||||||||||||||||| Sbjct: 136 gctcaagttcctcatctacg 155 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,233,017 Number of Sequences: 3902068 Number of extensions: 3233017 Number of successful extensions: 72377 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70699 Number of HSP's gapped (non-prelim): 1676 length of query: 527 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 504 effective length of database: 17,143,297,704 effective search space: 8640222042816 effective search space used: 8640222042816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)