ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28f09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP000752.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-689N19, complete sequence Length = 194140 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 482 ctattgctctccccacagtgctg 504 ||||||||||||||||||||||| Sbjct: 191182 ctattgctctccccacagtgctg 191160
>gb|U61448.1|HSMYO7A36 Human myosin VIIa (MYO7A) gene, 3' exon 28 Length = 205 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 482 ctattgctctccccacagtgctg 504 ||||||||||||||||||||||| Sbjct: 136 ctattgctctccccacagtgctg 114
>gb|DQ115024.1| Saccharum officinarum clone SCBFRT1069B12 transposon hopscotch-like, partial sequence Length = 2915 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 72 cggtggcctctccggtaccctc 93 |||||||||||||||||||||| Sbjct: 1143 cggtggcctctccggtaccctc 1164
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 cctcgcccgccgcctccatcc 110 ||||||||||||||||||||| Sbjct: 2718070 cctcgcccgccgcctccatcc 2718090
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 cctcgcccgccgcctccatcc 110 ||||||||||||||||||||| Sbjct: 1928993 cctcgcccgccgcctccatcc 1928973
>gb|AC091403.3| Sus scrofa clone RP44-431F19, complete sequence Length = 80906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 tcttcacctcctccccgggcc 275 ||||||||||||||||||||| Sbjct: 7095 tcttcacctcctccccgggcc 7115
>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence Length = 271577 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 343 tccgcagcgtccgtggcggccccggcgag 371 ||||| |||||||||||| |||||||||| Sbjct: 19652 tccgcggcgtccgtggcgaccccggcgag 19680
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 ggcgtggtggcgtgggccgcggagg 403 |||||||||| |||||||||||||| Sbjct: 912186 ggcgtggtggagtgggccgcggagg 912162
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 ggcgtggtggcgtgggccgcggagg 403 |||||||||| |||||||||||||| Sbjct: 586878 ggcgtggtggagtgggccgcggagg 586854
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 ccggcgtggtggcgtgggccgcgg 400 |||||||| ||||||||||||||| Sbjct: 2916350 ccggcgtgctggcgtgggccgcgg 2916373
>ref|XM_466228.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1488 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 406 tcgtcaatggccgtcgcggcggtg 429 ||||| |||||||||||||||||| Sbjct: 86 tcgtccatggccgtcgcggcggtg 63
>ref|NM_197399.1| Oryza sativa (japonica cultivar-group) putative Oxa1 protein (OSJNBb0018B10.22), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 tcaccggtctgaactggtgg 477 |||||||||||||||||||| Sbjct: 413 tcaccggtctgaactggtgg 432
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 gccatcccgccgcagcttctcctc 296 |||||||||||||| ||||||||| Sbjct: 646341 gccatcccgccgcaccttctcctc 646318
>gb|AC123694.11| Mus musculus chromosome 10, clone RP23-326O5, complete sequence Length = 214111 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ctcgcccgccgcctccatcc 110 |||||||||||||||||||| Sbjct: 74720 ctcgcccgccgcctccatcc 74739
>ref|XM_605164.2| PREDICTED: Bos taurus hypothetical LOC526790 (LOC526790), mRNA Length = 1128 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gccgcagcttctcctcctcc 300 |||||||||||||||||||| Sbjct: 760 gccgcagcttctcctcctcc 741
>gb|AY380559.1| Burkholderia cepacia genomovar I MBP gene, partial cds; putative regulatory proteins and putative asparagine synthetase genes, complete cds; and unknown gene Length = 6299 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 atggccgtcgcggcggtgca 431 |||||||||||||||||||| Sbjct: 1619 atggccgtcgcggcggtgca 1638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tcccgccgcagcttctcctc 296 |||||||||||||||||||| Sbjct: 13304873 tcccgccgcagcttctcctc 13304892
>ref|XM_984539.1| PREDICTED: Mus musculus cleavage and polyadenylation specific factor 6 (Cpsf6), mRNA Length = 7981 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ctcgcccgccgcctccatcc 110 |||||||||||||||||||| Sbjct: 660 ctcgcccgccgcctccatcc 679
>gb|AC127690.4| Mus musculus BAC clone RP24-215A3 from chromosome 17, complete sequence Length = 187751 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tcggtcttcacctcctcccc 270 |||||||||||||||||||| Sbjct: 86529 tcggtcttcacctcctcccc 86510
>gb|AC119848.8| Mus musculus chromosome 7, clone RP23-73B20, complete sequence Length = 239297 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tccacccccacccgcaccac 190 |||||||||||||||||||| Sbjct: 40435 tccacccccacccgcaccac 40454
>gb|AC126224.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0078O24, complete sequence Length = 135980 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tcccgccgcagcttctcctc 296 |||||||||||||||||||| Sbjct: 1744 tcccgccgcagcttctcctc 1763
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttggccgcggccgcgcgcag 59 |||||||||||||||||||| Sbjct: 168729 ttggccgcggccgcgcgcag 168748
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttggccgcggccgcgcgcag 59 |||||||||||||||||||| Sbjct: 118966 ttggccgcggccgcgcgcag 118985
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttggccgcggccgcgcgcag 59 |||||||||||||||||||| Sbjct: 85551 ttggccgcggccgcgcgcag 85532
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atggcgttggccgcggccgc 53 |||||||||||||||||||| Sbjct: 226131 atggcgttggccgcggccgc 226150
>emb|CR396583.6| Zebrafish DNA sequence from clone DKEY-157G20 in linkage group 5, complete sequence Length = 116605 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cctcgcccgccgcctccatc 109 |||||||||||||||||||| Sbjct: 111937 cctcgcccgccgcctccatc 111918
>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent ansamitocin biosynthetic gene cluster I, partial sequence Length = 82746 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 293 cctcctcccgcgacaccggcttcaccga 320 ||||||||||||||||||| ||| |||| Sbjct: 29609 cctcctcccgcgacaccgggttcgccga 29582
>dbj|AB225314.1| Aspergillus oryzae cDNA, contig sequence: AoEST2166 Length = 635 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ttctcctcctcccgcgacac 308 |||||||||||||||||||| Sbjct: 537 ttctcctcctcccgcgacac 518
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cgccccttccacccccaccc 183 |||||||||||||||||||| Sbjct: 896250 cgccccttccacccccaccc 896231
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ttctcctcctcccgcgacac 308 |||||||||||||||||||| Sbjct: 700004 ttctcctcctcccgcgacac 700023
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 gcggtccattccgtcaccgg 464 |||||||||||||||||||| Sbjct: 3113741 gcggtccattccgtcaccgg 3113722
>ref|XM_684495.1| PREDICTED: Danio rerio similar to RP11-100C15.2 (LOC561094), mRNA Length = 7210 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cctcgcccgccgcctccatc 109 |||||||||||||||||||| Sbjct: 176 cctcgcccgccgcctccatc 157
>dbj|AK040152.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430070G12 product:hypothetical protein, full insert sequence Length = 3223 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tccacccccacccgcaccac 190 |||||||||||||||||||| Sbjct: 943 tccacccccacccgcaccac 962
>dbj|AK084063.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130081D04 product:hypothetical Calponin homology (CH) domain containing protein, full insert sequence Length = 1972 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tccacccccacccgcaccac 190 |||||||||||||||||||| Sbjct: 1374 tccacccccacccgcaccac 1393
>dbj|AK031334.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030408D07 product:hypothetical Calponin homology (CH) domain containing protein, full insert sequence Length = 1921 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tccacccccacccgcaccac 190 |||||||||||||||||||| Sbjct: 956 tccacccccacccgcaccac 975
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 368 cgagcttccccggcgtggtggcgtgggccgcg 399 |||||||| ||||||||||| ||| ||||||| Sbjct: 1350569 cgagcttcgccggcgtggtgtcgtcggccgcg 1350538
>emb|BX511138.10| Zebrafish DNA sequence from clone DKEYP-52D3 in linkage group 5, complete sequence Length = 190187 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cctcgcccgccgcctccatc 109 |||||||||||||||||||| Sbjct: 88325 cctcgcccgccgcctccatc 88344
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tcccgccgcagcttctcctc 296 |||||||||||||||||||| Sbjct: 13301648 tcccgccgcagcttctcctc 13301667
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 tcgtcaatggccgtcgcggcggtg 429 ||||| |||||||||||||||||| Sbjct: 21193269 tcgtccatggccgtcgcggcggtg 21193292
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gagcttccccggcgtggtgg 388 |||||||||||||||||||| Sbjct: 4711507 gagcttccccggcgtggtgg 4711526
>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20 Length = 129595 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 tcgtcaatggccgtcgcggcggtg 429 ||||| |||||||||||||||||| Sbjct: 99985 tcgtccatggccgtcgcggcggtg 100008
>dbj|AK129480.1| Mus musculus mRNA for mKIAA3015 protein Length = 5339 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tccacccccacccgcaccac 190 |||||||||||||||||||| Sbjct: 953 tccacccccacccgcaccac 972
>dbj|AK072724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139K17, full insert sequence Length = 1488 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 406 tcgtcaatggccgtcgcggcggtg 429 ||||| |||||||||||||||||| Sbjct: 87 tcgtccatggccgtcgcggcggtg 64
>gb|AC120854.15| Mus musculus chromosome 7, clone RP23-329B6, complete sequence Length = 205102 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tccacccccacccgcaccac 190 |||||||||||||||||||| Sbjct: 77105 tccacccccacccgcaccac 77086
>ref|NM_175272.2| Mus musculus RIKEN cDNA 5330421F07 gene (5330421F07Rik), mRNA Length = 3223 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tccacccccacccgcaccac 190 |||||||||||||||||||| Sbjct: 943 tccacccccacccgcaccac 962
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tcccgccgcagcttctcctc 296 |||||||||||||||||||| Sbjct: 14968 tcccgccgcagcttctcctc 14949 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,961,509 Number of Sequences: 3902068 Number of extensions: 3961509 Number of successful extensions: 90241 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88971 Number of HSP's gapped (non-prelim): 1270 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
