ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28e11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111785.1| Zea mays CL244_1 mRNA sequence Length = 1880 Score = 238 bits (120), Expect = 2e-59 Identities = 230/266 (86%), Gaps = 3/266 (1%) Strand = Plus / Plus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 |||||||||| |||| |||||| || ||||||||||| |||||||||||||||||||| | Sbjct: 281 tgctcgacgcagacgagttccgccggcagggccaccaagtcatcgacttcatcgccgact 340 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||||| |||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct: 341 actacggccgcatggacgactaccccgtgcaccccagcgtcaaccccggcttcctgcgcc 400 Query: 394 atgcgctccccaaggacgcgccgtcccgcccgga---gcccgacgcgttcggctcggcgc 450 ||||||| | | |||||||| || ||||| ||||||||||||||| | |||| Sbjct: 401 gccagctccccgacaaggcgccgtcgcgtccggagtcgcccgacgcgttcggtgccgcgc 460 Query: 451 taagggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcact 510 | |||||||||| ||||||||||| || ||||||||||||||||||||| |||| |||| Sbjct: 461 tgcgggacgtccgtgacctcatcctgccaggcatgacgcactggcagagcgcccgccact 520 Query: 511 tcgcgcacttcccggcgtccagcagc 536 |||||||||||||||||||||||||| Sbjct: 521 tcgcgcacttcccggcgtccagcagc 546
>ref|NM_191411.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1602 Score = 236 bits (119), Expect = 6e-59 Identities = 227/263 (86%) Strand = Plus / Plus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 |||||||||| |||| ||||||||| | |||||||||||| |||||||||||||||| | Sbjct: 113 tgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgact 172 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||| |||| || |||||||| ||||| |||||||| ||||||||||||||| Sbjct: 173 actacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgcc 232 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 ||||||| |||||||||||||||||||||||||| ||||| | ||||||| Sbjct: 233 gccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctgc 292 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 |||| ||||||||||||||||| || ||| ||||||||||||||||||| || ||||||| Sbjct: 293 gggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttcg 352 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 353 cgcacttcccggcgtcgagcagc 375
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 236 bits (119), Expect = 6e-59 Identities = 227/263 (86%) Strand = Plus / Minus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 |||||||||| |||| ||||||||| | |||||||||||| |||||||||||||||| | Sbjct: 32495980 tgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgact 32495921 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||| |||| || |||||||| ||||| |||||||| ||||||||||||||| Sbjct: 32495920 actacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgcc 32495861 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 ||||||| |||||||||||||||||||||||||| ||||| | ||||||| Sbjct: 32495860 gccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctgc 32495801 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 |||| ||||||||||||||||| || ||| ||||||||||||||||||| || ||||||| Sbjct: 32495800 gggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttcg 32495741 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 32495740 cgcacttcccggcgtcgagcagc 32495718
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 236 bits (119), Expect = 6e-59 Identities = 227/263 (86%) Strand = Plus / Minus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 |||||||||| |||| ||||||||| | |||||||||||| |||||||||||||||| | Sbjct: 83501 tgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgact 83442 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||| |||| || |||||||| ||||| |||||||| ||||||||||||||| Sbjct: 83441 actacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgcc 83382 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 ||||||| |||||||||||||||||||||||||| ||||| | ||||||| Sbjct: 83381 gccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctgc 83322 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 |||| ||||||||||||||||| || ||| ||||||||||||||||||| || ||||||| Sbjct: 83321 gggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttcg 83262 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 83261 cgcacttcccggcgtcgagcagc 83239
>dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene for tryptophan decarboxylase, complete cds Length = 1602 Score = 236 bits (119), Expect = 6e-59 Identities = 227/263 (86%) Strand = Plus / Plus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 |||||||||| |||| ||||||||| | |||||||||||| |||||||||||||||| | Sbjct: 113 tgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgact 172 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||| |||| || |||||||| ||||| |||||||| ||||||||||||||| Sbjct: 173 actacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgcc 232 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 ||||||| |||||||||||||||||||||||||| ||||| | ||||||| Sbjct: 233 gacagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctgc 292 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 |||| ||||||||||||||||| || ||| ||||||||||||||||||| || ||||||| Sbjct: 293 gggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttcg 352 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 353 cgcacttcccggcgtcgagcagc 375
>dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D01, full insert sequence Length = 1922 Score = 236 bits (119), Expect = 6e-59 Identities = 227/263 (86%) Strand = Plus / Plus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 |||||||||| |||| ||||||||| | |||||||||||| |||||||||||||||| | Sbjct: 236 tgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgact 295 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||| |||| || |||||||| ||||| |||||||| ||||||||||||||| Sbjct: 296 actacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgcc 355 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 ||||||| |||||||||||||||||||||||||| ||||| | ||||||| Sbjct: 356 gccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctgc 415 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 |||| ||||||||||||||||| || ||| ||||||||||||||||||| || ||||||| Sbjct: 416 gggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttcg 475 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 476 cgcacttcccggcgtcgagcagc 498
>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA decarboxylase 2 (OSJNBa0032N04.8), mRNA Length = 1581 Score = 188 bits (95), Expect = 1e-44 Identities = 221/263 (84%) Strand = Plus / Plus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 ||||||||||||||| ||||||||| ||||| | | ||| ||||| | |||||||| | Sbjct: 98 tgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgact 157 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||||||||||| |||||||||||||||| ||||| || |||||||| ||| Sbjct: 158 actacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgcc 217 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 | ||||| ||| |||||||||||| ||||||||||||||||| | ||||| | Sbjct: 218 accgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatgc 277 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 ||||||||| ||| ||||||| ||||| |||||||||||||||||||||| ||||||| Sbjct: 278 aggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttcg 337 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 338 cgcacttcccggcgtcgagcagc 360
>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032N04, from chromosome 10, complete sequence Length = 159445 Score = 188 bits (95), Expect = 1e-44 Identities = 221/263 (84%) Strand = Plus / Minus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 ||||||||||||||| ||||||||| ||||| | | ||| ||||| | |||||||| | Sbjct: 63617 tgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgact 63558 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||||||||||| |||||||||||||||| ||||| || |||||||| ||| Sbjct: 63557 actacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgcc 63498 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 | ||||| ||| |||||||||||| ||||||||||||||||| | ||||| | Sbjct: 63497 accgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatgc 63438 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 ||||||||| ||| ||||||| ||||| |||||||||||||||||||||| ||||||| Sbjct: 63437 aggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttcg 63378 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 63377 cgcacttcccggcgtcgagcagc 63355
>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0019N10, from chromosome 10, complete sequence Length = 192267 Score = 188 bits (95), Expect = 1e-44 Identities = 221/263 (84%) Strand = Plus / Plus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 ||||||||||||||| ||||||||| ||||| | | ||| ||||| | |||||||| | Sbjct: 168763 tgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgact 168822 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||||||||||| |||||||||||||||| ||||| || |||||||| ||| Sbjct: 168823 actacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgcc 168882 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 | ||||| ||| |||||||||||| ||||||||||||||||| | ||||| | Sbjct: 168883 accgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatgc 168942 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 ||||||||| ||| ||||||| ||||| |||||||||||||||||||||| ||||||| Sbjct: 168943 aggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttcg 169002 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 169003 cgcacttcccggcgtcgagcagc 169025
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 188 bits (95), Expect = 1e-44 Identities = 221/263 (84%) Strand = Plus / Minus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 ||||||||||||||| ||||||||| ||||| | | ||| ||||| | |||||||| | Sbjct: 11745556 tgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgact 11745497 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||||||||||| |||||||||||||||| ||||| || |||||||| ||| Sbjct: 11745496 actacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgcc 11745437 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 | ||||| ||| |||||||||||| ||||||||||||||||| | ||||| | Sbjct: 11745436 accgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatgc 11745377 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 ||||||||| ||| ||||||| ||||| |||||||||||||||||||||| ||||||| Sbjct: 11745376 aggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttcg 11745317 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 11745316 cgcacttcccggcgtcgagcagc 11745294
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 188 bits (95), Expect = 1e-44 Identities = 221/263 (84%) Strand = Plus / Minus Query: 274 tgctcgacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagt 333 ||||||||||||||| ||||||||| ||||| | | ||| ||||| | |||||||| | Sbjct: 11752896 tgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgact 11752837 Query: 334 actacggcggcatgggggagtaccccgtgcaccccagcgtcacgcccggcttcctgcgca 393 |||||| |||||||||||| |||||||||||||||| ||||| || |||||||| ||| Sbjct: 11752836 actacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgcc 11752777 Query: 394 atgcgctccccaaggacgcgccgtcccgcccggagcccgacgcgttcggctcggcgctaa 453 | ||||| ||| |||||||||||| ||||||||||||||||| | ||||| | Sbjct: 11752776 accgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatgc 11752717 Query: 454 gggacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcg 513 ||||||||| ||| ||||||| ||||| |||||||||||||||||||||| ||||||| Sbjct: 11752716 aggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttcg 11752657 Query: 514 cgcacttcccggcgtccagcagc 536 |||||||||||||||| |||||| Sbjct: 11752656 cgcacttcccggcgtcgagcagc 11752634
>ref|XM_475687.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1698 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 456 gacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcgcg 515 ||||||||||| ||||| |||||||| | || |||||||||||||| |||||||||||| Sbjct: 253 gacgtccgcgagctcatgctcccggggctcactcactggcagagcccacgtcacttcgcg 312 Query: 516 cacttcccggcg 527 |||||| ||||| Sbjct: 313 cacttctcggcg 324 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 279 gacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagtactac 338 ||||||| || ||||||||||||||| | |||||| ||||||||||||| || |||||| Sbjct: 76 gacgccggcgagttccggcgccagggacggcaggtcgtcgacttcatcgcggactactac 135 Query: 339 ggcggcat 346 | |||||| Sbjct: 136 gccggcat 143
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11, complete sequence Length = 162772 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 456 gacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcgcg 515 ||||||||||| ||||| |||||||| | || |||||||||||||| |||||||||||| Sbjct: 35042 gacgtccgcgagctcatgctcccggggctcactcactggcagagcccacgtcacttcgcg 34983 Query: 516 cacttcccggcg 527 |||||| ||||| Sbjct: 34982 cacttctcggcg 34971 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 279 gacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagtactac 338 ||||||| || ||||||||||||||| | |||||| ||||||||||||| || |||||| Sbjct: 35219 gacgccggcgagttccggcgccagggacggcaggtcgtcgacttcatcgcggactactac 35160 Query: 339 ggcggcat 346 | |||||| Sbjct: 35159 gccggcat 35152
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 456 gacgtccgcgacctcatcctcccgggcatgacgcactggcagagcccccgtcacttcgcg 515 ||||||||||| ||||| |||||||| | || |||||||||||||| |||||||||||| Sbjct: 25092387 gacgtccgcgagctcatgctcccggggctcactcactggcagagcccacgtcacttcgcg 25092328 Query: 516 cacttcccggcg 527 |||||| ||||| Sbjct: 25092327 cacttctcggcg 25092316 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 279 gacgccgacgtgttccggcgccagggccaccaggtcatcgacttcatcgccgagtactac 338 ||||||| || ||||||||||||||| | |||||| ||||||||||||| || |||||| Sbjct: 25092564 gacgccggcgagttccggcgccagggacggcaggtcgtcgacttcatcgcggactactac 25092505 Query: 339 ggcggcat 346 | |||||| Sbjct: 25092504 gccggcat 25092497
>emb|BX018294.1|CNS08MA2 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA27DA04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 948 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 477 ccgggcatgacgcactggcagagccc 502 |||||||| ||||||||||||||||| Sbjct: 337 ccgggcattacgcactggcagagccc 362
>ref|XM_319749.2| Anopheles gambiae str. PEST ENSANGP00000017218 (ENSANGG00000014729), partial mRNA Length = 1946 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 477 ccgggcatgacgcactggcagagccc 502 |||||||| ||||||||||||||||| Sbjct: 432 ccgggcattacgcactggcagagccc 457
>gb|AF300727.1| Salal root associated fungus UBCtra1018C 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 285 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 ggcacgccgcagtgccccaac 272 ||||||||||||||||||||| Sbjct: 118 ggcacgccgcagtgccccaac 98
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 tcgacgccgacgtgttccggc 297 ||||||||||||||||||||| Sbjct: 27338696 tcgacgccgacgtgttccggc 27338676
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 tcgacgccgacgtgttccggc 297 ||||||||||||||||||||| Sbjct: 27264296 tcgacgccgacgtgttccggc 27264276
>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124605 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 tcgacgccgacgtgttccggc 297 ||||||||||||||||||||| Sbjct: 7016 tcgacgccgacgtgttccggc 6996
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 cgtcccgcccggagcccgac 434 |||||||||||||||||||| Sbjct: 20890 cgtcccgcccggagcccgac 20909
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 acgcccggcttcctgcgcaa 394 |||||||||||||||||||| Sbjct: 26571 acgcccggcttcctgcgcaa 26552
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 caacgtgctcgacgccgacg 288 |||||||||||||||||||| Sbjct: 3169552 caacgtgctcgacgccgacg 3169533
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cgctgatcgtgctgctgatt 110 |||||||||||||||||||| Sbjct: 400345 cgctgatcgtgctgctgatt 400364
>emb|AL121888.20|HS1050C22 Human DNA sequence from clone RP5-1050C22 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 136931 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ggcagagcccccgtcacttc 512 |||||||||||||||||||| Sbjct: 1715 ggcagagcccccgtcacttc 1734
>emb|BX051475.1|CNS09BVR Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC28DD01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 928 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 accggcggcagccgctggca 255 |||||||||||||||||||| Sbjct: 750 accggcggcagccgctggca 731
>emb|BX015201.1|CNS08JW5 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA22DD05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 961 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 accggcggcagccgctggca 255 |||||||||||||||||||| Sbjct: 756 accggcggcagccgctggca 737
>emb|BX005747.1|CNS08CLJ Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA1BE09 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 683 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 accggcggcagccgctggca 255 |||||||||||||||||||| Sbjct: 517 accggcggcagccgctggca 498
>gb|AE008890.1| Salmonella typhimurium LT2, section 194 of 220 of the complete genome Length = 21582 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 505 gtcacttcgcgcacttcccggcgt 528 |||||||||||||||||| ||||| Sbjct: 19094 gtcacttcgcgcacttccgggcgt 19117
>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11 Length = 346161 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 gcttcctgcgcaatgcgctc 401 |||||||||||||||||||| Sbjct: 50096 gcttcctgcgcaatgcgctc 50077
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 acgcccggcttcctgcgcaa 394 |||||||||||||||||||| Sbjct: 1386004 acgcccggcttcctgcgcaa 1385985
>emb|AL627279.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 15/20 Length = 264050 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 gtcacttcgcgcacttcccggcgt 528 |||||||||||||||||| ||||| Sbjct: 186896 gtcacttcgcgcacttccgggcgt 186873
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 acgcccggcttcctgcgcaa 394 |||||||||||||||||||| Sbjct: 1247840 acgcccggcttcctgcgcaa 1247859
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gtcatcgacttcatcgccgagtac 335 |||||||||||| ||||||||||| Sbjct: 255034 gtcatcgacttcctcgccgagtac 255057
>gb|AE004634.1| Pseudomonas aeruginosa PAO1, section 195 of 529 of the complete genome Length = 10464 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 cgccgacgtgttccggcgccagggccac 308 ||||| |||| ||||||||||||||||| Sbjct: 6993 cgccgccgtgctccggcgccagggccac 6966
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 505 gtcacttcgcgcacttcccggcgt 528 |||||||||||||||||| ||||| Sbjct: 4072580 gtcacttcgcgcacttccgggcgt 4072603
>ref|XM_563593.1| Anopheles gambiae str. PEST ENSANGP00000026145 (ENSANGG00000023186), mRNA Length = 936 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 accggcggcagccgctggca 255 |||||||||||||||||||| Sbjct: 752 accggcggcagccgctggca 771
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 gtcacttcgcgcacttcccggcgt 528 |||||||||||||||||| ||||| Sbjct: 3636559 gtcacttcgcgcacttccgggcgt 3636536
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 505 gtcacttcgcgcacttcccggcgt 528 |||||||||||||||||| ||||| Sbjct: 4227571 gtcacttcgcgcacttccgggcgt 4227594
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 323 catcgccgagtactacggcggcatgggg 350 |||||||||||||||| ||| ||||||| Sbjct: 504747 catcgccgagtactaccgcgacatgggg 504774
>gb|AY839756.1| Ovine herpesvirus 2 strain BJ1035, complete genome Length = 135135 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 ttccggcgccagggccaccaggtc 314 |||| ||||||||||||||||||| Sbjct: 61986 ttcccgcgccagggccaccaggtc 61963 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,791,710 Number of Sequences: 3902068 Number of extensions: 2791710 Number of successful extensions: 58910 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57798 Number of HSP's gapped (non-prelim): 1107 length of query: 536 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 513 effective length of database: 17,143,297,704 effective search space: 8794511722152 effective search space used: 8794511722152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
