Clone Name | bart28e09 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakar... | 32 | 0.73 | 2 | EFP_MYCPA (Q741J3) Elongation factor P (EF-P) | 31 | 2.1 | 3 | EFP_MYCTU (P64034) Elongation factor P (EF-P) | 29 | 6.2 | 4 | EFP_MYCBO (P64035) Elongation factor P (EF-P) | 29 | 6.2 | 5 | YAGT_ECO57 (Q8X6I9) Putative xanthine dehydrogenase yagT iron-su... | 29 | 6.2 |
---|
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 32.3 bits (72), Expect = 0.73 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +2 Query: 191 VQPQPNQLTYHNGAVLHGDIPVSVLWYGRFTAAQKAI 301 +Q P +L Y + VLH ++ VS+LW G AI Sbjct: 1318 IQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAI 1354
>EFP_MYCPA (Q741J3) Elongation factor P (EF-P)| Length = 187 Score = 30.8 bits (68), Expect = 2.1 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +2 Query: 185 FLVQPQPNQLTYHNGAVLHGDIPVSV 262 FL++ P Q+ +HNG+ L+ ++PVSV Sbjct: 104 FLLEGMPVQVAFHNGSPLYIELPVSV 129
>EFP_MYCTU (P64034) Elongation factor P (EF-P)| Length = 187 Score = 29.3 bits (64), Expect = 6.2 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 185 FLVQPQPNQLTYHNGAVLHGDIPVSV 262 FL++ P Q+ +HNG L+ ++PV+V Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129
>EFP_MYCBO (P64035) Elongation factor P (EF-P)| Length = 187 Score = 29.3 bits (64), Expect = 6.2 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 185 FLVQPQPNQLTYHNGAVLHGDIPVSV 262 FL++ P Q+ +HNG L+ ++PV+V Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129
>YAGT_ECO57 (Q8X6I9) Putative xanthine dehydrogenase yagT iron-sulfur binding| subunit Length = 229 Score = 29.3 bits (64), Expect = 6.2 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -1 Query: 502 ALPQRARLVGDLAGQDHPRCLGGAGAVLADGRRL 401 AL + L+G G DH +C GA VL +GRRL Sbjct: 85 ALRENLHLIGTKKGCDHGQC--GACTVLVNGRRL 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.135 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,852,097 Number of Sequences: 219361 Number of extensions: 708538 Number of successful extensions: 1876 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1860 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)