ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart28e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakar... 32 0.73
2EFP_MYCPA (Q741J3) Elongation factor P (EF-P) 31 2.1
3EFP_MYCTU (P64034) Elongation factor P (EF-P) 29 6.2
4EFP_MYCBO (P64035) Elongation factor P (EF-P) 29 6.2
5YAGT_ECO57 (Q8X6I9) Putative xanthine dehydrogenase yagT iron-su... 29 6.2

>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
            stimulating factor) (Superficial zone proteoglycan)
            [Contains: Proteoglycan-4 C-terminal part]
          Length = 1404

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 191  VQPQPNQLTYHNGAVLHGDIPVSVLWYGRFTAAQKAI 301
            +Q  P +L Y +  VLH ++ VS+LW G       AI
Sbjct: 1318 IQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAI 1354



to top

>EFP_MYCPA (Q741J3) Elongation factor P (EF-P)|
          Length = 187

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +2

Query: 185 FLVQPQPNQLTYHNGAVLHGDIPVSV 262
           FL++  P Q+ +HNG+ L+ ++PVSV
Sbjct: 104 FLLEGMPVQVAFHNGSPLYIELPVSV 129



to top

>EFP_MYCTU (P64034) Elongation factor P (EF-P)|
          Length = 187

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 185 FLVQPQPNQLTYHNGAVLHGDIPVSV 262
           FL++  P Q+ +HNG  L+ ++PV+V
Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129



to top

>EFP_MYCBO (P64035) Elongation factor P (EF-P)|
          Length = 187

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 185 FLVQPQPNQLTYHNGAVLHGDIPVSV 262
           FL++  P Q+ +HNG  L+ ++PV+V
Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129



to top

>YAGT_ECO57 (Q8X6I9) Putative xanthine dehydrogenase yagT iron-sulfur binding|
           subunit
          Length = 229

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 502 ALPQRARLVGDLAGQDHPRCLGGAGAVLADGRRL 401
           AL +   L+G   G DH +C  GA  VL +GRRL
Sbjct: 85  ALRENLHLIGTKKGCDHGQC--GACTVLVNGRRL 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,852,097
Number of Sequences: 219361
Number of extensions: 708538
Number of successful extensions: 1876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
to top