ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28d12 |
|---|---|
| Clone Library Name | barley_pub |
>MSBP1_ARATH (Q9XFM6) Membrane steroid-binding protein 1 (AtMP1)| Length = 220 Score = 141 bits (355), Expect = 1e-33 Identities = 75/126 (59%), Positives = 83/126 (65%), Gaps = 5/126 (3%) Frame = +2 Query: 107 ELWETLKQAILAYTGLSPXXXXXXXXXXXXLYHVVSGIFAXXXXXXXXXXXXXXXXXXXX 286 ELW+TLK+AI AYTGLSP +Y V+SG FA Sbjct: 4 ELWQTLKEAIHAYTGLSPVVFFTALALAFAIYQVISGWFASPFDDVNRHQRARSLAQEEE 63 Query: 287 X-----VQLGEVDEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKD 451 VQ+GE+ EEEL+QYDGSDP+KPLLMAIK QIYDVTQSRMFYGPGGPYALFAGKD Sbjct: 64 PPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKD 123 Query: 452 ASRALA 469 ASRALA Sbjct: 124 ASRALA 129
>SBP2_ARATH (Q9M2Z4) Putative steroid binding protein 2 (AtMP2)| Length = 233 Score = 139 bits (349), Expect = 5e-33 Identities = 74/124 (59%), Positives = 81/124 (65%), Gaps = 1/124 (0%) Frame = +2 Query: 101 VAELWETLKQAILAYTGLSPXXXXXXXXXXXXLYHVVSGIFAXXXXXXXXXXXXXXXXXX 280 V ++WETLK+ I AYTGLSP +Y VVSG F Sbjct: 2 VQQIWETLKETITAYTGLSPAAFFTVLALAFAVYQVVSGFFVSPEVHRPRSLEVQPQSEP 61 Query: 281 XXX-VQLGEVDEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDAS 457 VQLGE+ EEEL+ YDGSD KKPLLMAIKGQIYDV+QSRMFYGPGGPYALFAGKDAS Sbjct: 62 LPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDAS 121 Query: 458 RALA 469 RALA Sbjct: 122 RALA 125
>SBP3_ARATH (Q9SK39) Putative steroid-binding protein 3 (AtMP3)| Length = 100 Score = 73.6 bits (179), Expect = 2e-13 Identities = 32/55 (58%), Positives = 43/55 (78%) Frame = +2 Query: 302 EVDEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRAL 466 E E+L QY+G+D KP+ +AIKG+++DVT + FYG GG Y++FAGKDASRAL Sbjct: 2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRAL 56
>PGRC1_RAT (P70580) Membrane-associated progesterone receptor component 1| (Acidic 25 kDa protein) (25-DX) Length = 194 Score = 68.6 bits (166), Expect = 8e-12 Identities = 33/52 (63%), Positives = 42/52 (80%), Gaps = 1/52 (1%) Frame = +2 Query: 317 ELRQYDG-SDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 ELR+YDG DP+ +LMAI G+++DVT+ R FYGP GPY +FAG+DASR LA Sbjct: 76 ELRRYDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 125
>PGRC2_HUMAN (O15173) Membrane-associated progesterone receptor component 2| (Progesterone membrane-binding protein) (Steroid receptor protein DG6) Length = 223 Score = 67.8 bits (164), Expect = 1e-11 Identities = 30/52 (57%), Positives = 41/52 (78%) Frame = +2 Query: 314 EELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 E+LRQYDGS + +L+A+ G+++DVT+ FYGP GPY +FAG+DASR LA Sbjct: 106 EQLRQYDGSRNPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLA 156
>PGRC2_MOUSE (Q80UU9) Membrane associated progesterone receptor component 2| (Fragment) Length = 214 Score = 67.0 bits (162), Expect = 2e-11 Identities = 29/52 (55%), Positives = 41/52 (78%) Frame = +2 Query: 314 EELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 E+LRQYDG+ + +L+A+ G+++DVT+ FYGP GPY +FAG+DASR LA Sbjct: 97 EQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLA 147
>PGRC1_PIG (Q95250) Membrane-associated progesterone receptor component 1| Length = 193 Score = 67.0 bits (162), Expect = 2e-11 Identities = 32/52 (61%), Positives = 42/52 (80%), Gaps = 1/52 (1%) Frame = +2 Query: 317 ELRQYDG-SDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 ELR++DG DP+ +LMAI G+++DVT+ R FYGP GPY +FAG+DASR LA Sbjct: 75 ELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 124
>PGRC2_RAT (Q5XIU9) Membrane associated progesterone receptor component 2| Length = 217 Score = 67.0 bits (162), Expect = 2e-11 Identities = 29/52 (55%), Positives = 41/52 (78%) Frame = +2 Query: 314 EELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 E+LRQYDG+ + +L+A+ G+++DVT+ FYGP GPY +FAG+DASR LA Sbjct: 100 EQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLA 150
>PGRC1_MOUSE (O55022) Membrane-associated progesterone receptor component 1| Length = 194 Score = 67.0 bits (162), Expect = 2e-11 Identities = 32/52 (61%), Positives = 42/52 (80%), Gaps = 1/52 (1%) Frame = +2 Query: 317 ELRQYDG-SDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 ELR++DG DP+ +LMAI G+++DVT+ R FYGP GPY +FAG+DASR LA Sbjct: 76 ELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 125
>PGRC1_HUMAN (O00264) Membrane-associated progesterone receptor component 1| (mPR) Length = 194 Score = 67.0 bits (162), Expect = 2e-11 Identities = 32/52 (61%), Positives = 42/52 (80%), Gaps = 1/52 (1%) Frame = +2 Query: 317 ELRQYDG-SDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 ELR++DG DP+ +LMAI G+++DVT+ R FYGP GPY +FAG+DASR LA Sbjct: 76 ELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLA 125
>NENF_RAT (Q6IUR5) Neudesin precursor (Neuron-derived neurotrophic factor)| (Spinal cord injury-related protein 10) (SCIRP10-related protein) Length = 171 Score = 62.4 bits (150), Expect = 6e-10 Identities = 26/53 (49%), Positives = 37/53 (69%) Frame = +2 Query: 311 EEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 EEEL +Y G + +P+ +A+KG ++DVT + FYG G PY AGKD+SR +A Sbjct: 48 EEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVA 100
>NENF_MOUSE (Q9CQ45) Neudesin precursor (Neuron-derived neurotrophic factor)| (Secreted protein of unknown function) (SPUF protein) Length = 171 Score = 62.0 bits (149), Expect = 7e-10 Identities = 26/53 (49%), Positives = 37/53 (69%) Frame = +2 Query: 311 EEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 EEEL +Y G + +P+ +A+KG ++DVT + FYG G PY AGKD+SR +A Sbjct: 48 EEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVA 100
>DAP1_YEAST (Q12091) Damage response protein 1| Length = 152 Score = 60.1 bits (144), Expect = 3e-09 Identities = 29/60 (48%), Positives = 39/60 (65%) Frame = +2 Query: 290 VQLGEVDEEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 V G L +++G D +K + +AI+G++YD T+ R FYGP GPY FAG DASR LA Sbjct: 39 VVAGNFFPRTLSKFNGHDDEK-IFIAIRGKVYDCTRGRQFYGPSGPYTNFAGHDASRGLA 97
>NENF_HUMAN (Q9UMX5) Neudesin precursor (Neuron-derived neurotrophic factor)| (Secreted protein of unknown function) (SPUF protein) Length = 172 Score = 59.3 bits (142), Expect = 5e-09 Identities = 24/53 (45%), Positives = 36/53 (67%) Frame = +2 Query: 311 EEELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 EEEL +Y G + +P+ +A+KG ++DVT + FYG G PY GKD++R +A Sbjct: 49 EEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVA 101
>YL81_SCHPO (O13995) Hypothetical protein C25B8.01 in chromosome I| Length = 166 Score = 58.5 bits (140), Expect = 8e-09 Identities = 28/51 (54%), Positives = 36/51 (70%) Frame = +2 Query: 317 ELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALA 469 EL++Y+GS + +AIKG +Y+VT FYGP GPY+ FAG DASR LA Sbjct: 47 ELKEYNGSK-NSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLA 96
>Y3770_BACSK (Q5WBF8) UPF0271 protein ABC3770| Length = 253 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 329 YDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDA 454 Y+ + + L AI +YDV + +FYG G + AGK A Sbjct: 116 YNMAAADQALAEAIANAVYDVDPNLVFYGLAGSALIAAGKKA 157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,427,977 Number of Sequences: 219361 Number of extensions: 658426 Number of successful extensions: 2217 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2211 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
