ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart28d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protei... 27 9.5
2TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protei... 27 9.5
3GLAS_DROVI (Q24732) Protein glass 27 9.5

>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-)
          Length = 790

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 292 RRAEKDPAGANPRPAPRSCSRVNWTVLDSEAPAACVVSA 176
           +R++ DP+     P+P SC R       ++APA C+  A
Sbjct: 561 QRSKSDPSQLVRSPSPHSCHRAG-----NDAPAGCLSQA 594



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>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger
           protein A20)
          Length = 790

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 292 RRAEKDPAGANPRPAPRSCSRVNWTVLDSEAPAACVVSA 176
           +R++ DP+     P+P SC R       ++APA C+  A
Sbjct: 561 QRSKSDPSRLVRSPSPHSCHRAG-----NDAPAGCLSQA 594



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>GLAS_DROVI (Q24732) Protein glass|
          Length = 598

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 268 GANPRPAPRSCSRVNWTVLDSEAPAACVV 182
           GA+  P P  CS++NWT   + + A  V+
Sbjct: 286 GADGGPVPMQCSQMNWTPPSNSSAAVNVL 314


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,371,598
Number of Sequences: 219361
Number of extensions: 271052
Number of successful extensions: 1379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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