ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart28d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 90 6e-15
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 90 6e-15
4gb|AY105890.1| Zea mays PCO111077 mRNA sequence 50 0.005
5gb|AY623114.1| Homo sapiens polymerase (DNA directed) sigma (POL... 44 0.29
6gb|AC122710.3| Homo sapiens chromosome 5 clone RP11-332J15, comp... 44 0.29
7ref|XM_462798.2| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
8gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, com... 42 1.2
9emb|AJ429077.1|HMA429077 Haloarcula marismortui ORF11, ORF10, OR... 42 1.2
10gb|DQ388768.1| Sus scrofa calcium-activated neutral protease 1 (... 42 1.2
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
13dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
14dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
15dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.2
17dbj|AK063678.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
18dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
19dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.2
20ref|NM_188074.1| Oryza sativa (japonica cultivar-group), Ozsa849... 40 4.6
21ref|XM_483345.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.6
22ref|XM_483344.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.6
23ref|XM_593720.2| PREDICTED: Bos taurus similar to essential meio... 40 4.6
24ref|XM_369815.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.6
25ref|XM_417678.1| PREDICTED: Gallus gallus similar to dedicator o... 40 4.6
26ref|NG_005542.1| Homo sapiens homeobox C4/C5/C6 cluster (HOXC4/C... 40 4.6
27gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence 40 4.6
28emb|X61755.1|HSHOX3D Human HOX3D gene for homeoprotein HOX3D 40 4.6
29dbj|AK126679.1| Homo sapiens cDNA FLJ44724 fis, clone BRACE30243... 40 4.6
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
32gb|AC021803.8| Homo sapiens chromosome 18, clone RP11-28F1, comp... 40 4.6
33gb|AC009267.15|AC009267 Homo sapiens chromosome 18, clone RP11-4... 40 4.6
34gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, comple... 40 4.6
35gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster 40 4.6
36gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete ... 40 4.6
37gb|AY885693.1| Pseudosciaena crocea clone LYC0003 microsatellite... 40 4.6
38ref|XM_342676.2| PREDICTED: Rattus norvegicus Rho guanine nucleo... 40 4.6
39dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
40dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 4.6
41dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
42ref|XM_320795.2| Anopheles gambiae str. PEST ENSANGP00000008896 ... 40 4.6
43dbj|AK105385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
44dbj|AK073374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
46emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.6
47emb|AL929120.7| Mouse DNA sequence from clone RP23-457H10 on chr... 40 4.6
48gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 4.6
49gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosom... 40 4.6
50emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chro... 40 4.6 
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                   
Query: 49     ccgccttcgagtcggacgagctgctcctccacgacgacgacgagttcgagggc 101
              |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 116334 ccgccttccagtccgacgagctgctcctccacgacgacgacgagttcgagggc 116282



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 94/111 (84%), Gaps = 6/111 (5%)
 Strand = Plus / Minus

                                                                          
Query: 207    gagtccaacaccgtccagttcaccctcgagcacgacctcggagccggcctagggttcgcc 266
              ||||||| | |||| |||||| | ||||||||||||||||| |||||      ||||| |
Sbjct: 116185 gagtccagcgccgtgcagttctcgctcgagcacgacctcggcgccgg------gttcgtc 116132

                                                                 
Query: 267    cccgccgggtccttctccgcccgcctcaagtcctcggcccacgggtcccag 317
              ||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 116131 cccgcggggtccttctccgcccgcctcaagtcctccgcgcacggctcccag 116081
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                    
Query: 49      ccgccttcgagtcggacgagctgctcctccacgacgacgacgagttcgagggc 101
               |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8901893 ccgccttccagtccgacgagctgctcctccacgacgacgacgagttcgagggc 8901945



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 94/111 (84%), Gaps = 6/111 (5%)
 Strand = Plus / Plus

                                                                           
Query: 207     gagtccaacaccgtccagttcaccctcgagcacgacctcggagccggcctagggttcgcc 266
               ||||||| | |||| |||||| | ||||||||||||||||| |||||      ||||| |
Sbjct: 8902042 gagtccagcgccgtgcagttctcgctcgagcacgacctcggcgccgg------gttcgtc 8902095

                                                                  
Query: 267     cccgccgggtccttctccgcccgcctcaagtcctcggcccacgggtcccag 317
               ||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 8902096 cccgcggggtccttctccgcccgcctcaagtcctccgcgcacggctcccag 8902146
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                    
Query: 49      ccgccttcgagtcggacgagctgctcctccacgacgacgacgagttcgagggc 101
               |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 8973556 ccgccttccagtccgacgagctgctcctccacgacgacgacgagttcgagggc 8973608



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 94/111 (84%), Gaps = 6/111 (5%)
 Strand = Plus / Plus

                                                                           
Query: 207     gagtccaacaccgtccagttcaccctcgagcacgacctcggagccggcctagggttcgcc 266
               ||||||| | |||| |||||| | ||||||||||||||||| |||||      ||||| |
Sbjct: 8973705 gagtccagcgccgtgcagttctcgctcgagcacgacctcggcgccgg------gttcgtc 8973758

                                                                  
Query: 267     cccgccgggtccttctccgcccgcctcaagtcctcggcccacgggtcccag 317
               ||||| ||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 8973759 cccgcggggtccttctccgcccgcctcaagtcctccgcgcacggctcccag 8973809
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>gb|AY105890.1| Zea mays PCO111077 mRNA sequence
          Length = 1356

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 45  gccgccgccttcgagtcggacgagctgctcctccacgacgacgacgagttcgagggc 101
           |||||| ||||| | || |||||||| |||||| |||| ||||| ||||||||||||
Sbjct: 189 gccgcctccttccattccgacgagctcctcctcaacgatgacgaagagttcgagggc 245



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 206 cgagtccaacaccgtccagttcaccctcgagcacgacct 244
           |||||||||| | || |||||||| ||||||||||||||
Sbjct: 341 cgagtccaacgcagtgcagttcacgctcgagcacgacct 379
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>gb|AY623114.1| Homo sapiens polymerase (DNA directed) sigma (POLS) gene, complete
            cds
          Length = 23504

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 103  ccagggcctcctccaccccctc 124
            ||||||||||||||||||||||
Sbjct: 9433 ccagggcctcctccaccccctc 9454
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>gb|AC122710.3| Homo sapiens chromosome 5 clone RP11-332J15, complete sequence
          Length = 204540

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 103   ccagggcctcctccaccccctc 124
             ||||||||||||||||||||||
Sbjct: 67019 ccagggcctcctccaccccctc 67040
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>ref|XM_462798.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1280

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 109 cctcctccaccccctcccctc 129
           |||||||||||||||||||||
Sbjct: 104 cctcctccaccccctcccctc 124
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>gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, complete sequence
          Length = 280763

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    gcctcctccaccccctcccct 128
              |||||||||||||||||||||
Sbjct: 168111 gcctcctccaccccctcccct 168131
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>emb|AJ429077.1|HMA429077 Haloarcula marismortui ORF11, ORF10, ORF1, ORF2, ORF3, ORF4, narG gene,
             narH gene, ORF7, ORF8, narJ gene and ORF12 (partial)
          Length = 11087

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 78    cacgacgacgacgagttcgag 98
             |||||||||||||||||||||
Sbjct: 11014 cacgacgacgacgagttcgag 11034
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>gb|DQ388768.1| Sus scrofa calcium-activated neutral protease 1 (CAPN1) gene, exons
           20 through 22 and partial cds
          Length = 963

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 108 gcctcctccaccccctcccctcggc 132
           |||||||||| ||||||||||||||
Sbjct: 360 gcctcctccagcccctcccctcggc 336
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 109      cctcctccaccccctcccctc 129
                |||||||||||||||||||||
Sbjct: 23150680 cctcctccaccccctcccctc 23150660
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 109     cctcctccaccccctcccctc 129
               |||||||||||||||||||||
Sbjct: 3495456 cctcctccaccccctcccctc 3495436



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 72      ctcctccacgacgacgacgagttcgagg 99
               |||||| | |||||||||||||||||||
Sbjct: 9442935 ctcctcgaggacgacgacgagttcgagg 9442908
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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1126_D09
          Length = 138615

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 109    cctcctccaccccctcccctc 129
              |||||||||||||||||||||
Sbjct: 117718 cctcctccaccccctcccctc 117698
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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1276_B06
          Length = 175174

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   cctcctccaccccctcccctc 129
             |||||||||||||||||||||
Sbjct: 63524 cctcctccaccccctcccctc 63504
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>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1568_B05
          Length = 115325

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 109  cctcctccaccccctcccctc 129
            |||||||||||||||||||||
Sbjct: 7911 cctcctccaccccctcccctc 7891
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 78      cacgacgacgacgagttcgag 98
               |||||||||||||||||||||
Sbjct: 1073099 cacgacgacgacgagttcgag 1073119
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>dbj|AK063678.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E03, full
           insert sequence
          Length = 1280

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 109 cctcctccaccccctcccctc 129
           |||||||||||||||||||||
Sbjct: 104 cctcctccaccccctcccctc 124
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>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   cctcctccaccccctcccctc 129
             |||||||||||||||||||||
Sbjct: 82216 cctcctccaccccctcccctc 82196
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 101     caccagggcctcctccaccccctcc 125
               |||||||||| ||||||||||||||
Sbjct: 1860256 caccagggccgcctccaccccctcc 1860232
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>ref|NM_188074.1| Oryza sativa (japonica cultivar-group), Ozsa8494 predicted mRNA
          Length = 309

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 72 ctcctccacgacgacgacgagttcgagg 99
          |||||| | |||||||||||||||||||
Sbjct: 52 ctcctcgaggacgacgacgagttcgagg 79
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>ref|XM_483345.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1060

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 gcctcctccaccccctcccc 127
           ||||||||||||||||||||
Sbjct: 122 gcctcctccaccccctcccc 103
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>ref|XM_483344.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 gcctcctccaccccctcccc 127
           ||||||||||||||||||||
Sbjct: 124 gcctcctccaccccctcccc 105
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>ref|XM_593720.2| PREDICTED: Bos taurus similar to essential meiotic endonuclease 1
           homolog 2 (LOC515662), mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 gcaccagggcctcctccacc 119
           ||||||||||||||||||||
Sbjct: 652 gcaccagggcctcctccacc 633
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>ref|XM_369815.1| Magnaporthe grisea 70-15 hypothetical protein (MG06330.4) partial
           mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 218 cgtccagttcaccctcgagcacga 241
           ||||||||||| ||||||||||||
Sbjct: 51  cgtccagttcaacctcgagcacga 74
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>ref|XM_417678.1| PREDICTED: Gallus gallus similar to dedicator of cytokinesis 5
            (LOC419527), mRNA
          Length = 5957

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  tcccctcggccgccctcgac 142
            ||||||||||||||||||||
Sbjct: 3697 tcccctcggccgccctcgac 3678
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>ref|NG_005542.1| Homo sapiens homeobox C4/C5/C6 cluster (HOXC4/C5/C6@) on chromosome 12
          Length = 40195

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 99    ggcaccagggcctcctccaccccctccc 126
             |||||||||| ||||||||||| |||||
Sbjct: 14863 ggcaccagggtctcctccacccactccc 14890
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>gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence
          Length = 167732

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 220   tccagttcaccctcgagcacgacc 243
             ||||| ||||||||||||||||||
Sbjct: 79146 tccagctcaccctcgagcacgacc 79169
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>emb|X61755.1|HSHOX3D Human HOX3D gene for homeoprotein HOX3D
          Length = 4968

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 99  ggcaccagggcctcctccaccccctccc 126
           |||||||||| ||||||||||| |||||
Sbjct: 439 ggcaccagggtctcctccacccactccc 466
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>dbj|AK126679.1| Homo sapiens cDNA FLJ44724 fis, clone BRACE3024359, highly  similar
           to Homo sapiens follicular lymphoma variant
           translocation 1 (FVT1)
          Length = 3378

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 tccaccccctcccctcggcc 133
           ||||||||||||||||||||
Sbjct: 812 tccaccccctcccctcggcc 831
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 109      cctcctccaccccctcccct 128
                ||||||||||||||||||||
Sbjct: 18659334 cctcctccaccccctcccct 18659353
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 108      gcctcctccaccccctcccc 127
                ||||||||||||||||||||
Sbjct: 25683264 gcctcctccaccccctcccc 25683283
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>gb|AC021803.8| Homo sapiens chromosome 18, clone RP11-28F1, complete sequence
          Length = 117121

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tccaccccctcccctcggcc 133
             ||||||||||||||||||||
Sbjct: 11806 tccaccccctcccctcggcc 11825
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>gb|AC009267.15|AC009267 Homo sapiens chromosome 18, clone RP11-495C15, complete sequence
          Length = 188923

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tccaccccctcccctcggcc 133
             ||||||||||||||||||||
Sbjct: 59452 tccaccccctcccctcggcc 59433
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>gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, complete sequence
          Length = 111073

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   cctcctccaccccctcccct 128
             ||||||||||||||||||||
Sbjct: 74167 cctcctccaccccctcccct 74148
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>gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster
          Length = 152740

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 99     ggcaccagggcctcctccaccccctccc 126
              |||||||||| ||||||||||| |||||
Sbjct: 109761 ggcaccagggtctcctccacccactccc 109788
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>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence
          Length = 171949

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 99     ggcaccagggcctcctccaccccctccc 126
              |||||||||| ||||||||||| |||||
Sbjct: 168812 ggcaccagggtctcctccacccactccc 168839
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>gb|AY885693.1| Pseudosciaena crocea clone LYC0003 microsatellite sequence
          Length = 332

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 ctcctccaccccctcccctc 129
           ||||||||||||||||||||
Sbjct: 105 ctcctccaccccctcccctc 124
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>ref|XM_342676.2| PREDICTED: Rattus norvegicus Rho guanine nucleotide exchange factor
           (GEF) 5 (Arhgef5), mRNA
          Length = 5302

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  tcgagggcaccagggcctcctcca 117
           ||||||||| ||||||||||||||
Sbjct: 639 tcgagggcaacagggcctcctcca 662
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>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0693B08
          Length = 140812

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 72     ctcctccacgacgacgacgagttcgagg 99
              |||||| | |||||||||||||||||||
Sbjct: 113262 ctcctcgaggacgacgacgagttcgagg 113235
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    ccagggcctcctccaccccctccc 126
              |||||||||||||||||| |||||
Sbjct: 476046 ccagggcctcctccacccgctccc 476069
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>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0700D12
          Length = 145177

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gcctcctccaccccctcccc 127
             ||||||||||||||||||||
Sbjct: 61012 gcctcctccaccccctcccc 61031
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>ref|XM_320795.2| Anopheles gambiae str. PEST ENSANGP00000008896 (ENSANGG00000006700),
            partial mRNA
          Length = 2932

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   cttcgagtcggacgagctgc 72
            ||||||||||||||||||||
Sbjct: 2415 cttcgagtcggacgagctgc 2434
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>dbj|AK105385.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G10, full
           insert sequence
          Length = 1060

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 gcctcctccaccccctcccc 127
           ||||||||||||||||||||
Sbjct: 122 gcctcctccaccccctcccc 103
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>dbj|AK073374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029M19, full
           insert sequence
          Length = 971

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 gcctcctccaccccctcccc 127
           ||||||||||||||||||||
Sbjct: 124 gcctcctccaccccctcccc 105
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 109      cctcctccaccccctcccct 128
                ||||||||||||||||||||
Sbjct: 18585560 cctcctccaccccctcccct 18585579
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>emb|AL845345.9|CNS08CB7 Oryza sativa chromosome 12, . BAC OSJNBa0023G11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 180599

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cctcctccaccccctcccct 128
             ||||||||||||||||||||
Sbjct: 92786 cctcctccaccccctcccct 92805
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>emb|AL929120.7| Mouse DNA sequence from clone RP23-457H10 on chromosome 2, complete
             sequence
          Length = 178517

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cctcctccaccccctcccct 128
             ||||||||||||||||||||
Sbjct: 69099 cctcctccaccccctcccct 69118
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    ccagggcctcctccaccccctccc 126
              |||||||||||||||||| |||||
Sbjct: 120209 ccagggcctcctccacccgctccc 120232
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>gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosome 13, complete sequence
          Length = 212206

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    cctcctccaccccctcccct 128
              ||||||||||||||||||||
Sbjct: 177751 cctcctccaccccctcccct 177732
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>emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chromosome 2, complete
             sequence
          Length = 191638

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   cctcctccaccccctcccct 128
             ||||||||||||||||||||
Sbjct: 23578 cctcctccaccccctcccct 23559


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,105,085
Number of Sequences: 3902068
Number of extensions: 2105085
Number of successful extensions: 57380
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56321
Number of HSP's gapped (non-prelim): 1059
length of query: 347
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 325
effective length of database: 17,147,199,772
effective search space: 5572839925900
effective search space used: 5572839925900
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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