>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 88       gccggccatgtctgccgccgcctg 111
                ||||||||||||||||||||||||
Sbjct: 16885161 gccggccatgtctgccgccgcctg 16885184

>dbj|AP005817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_F01
          Length = 119248

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 88    gccggccatgtctgccgccgcctg 111
             ||||||||||||||||||||||||
Sbjct: 98526 gccggccatgtctgccgccgcctg 98549

>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1484_G09
          Length = 124695

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 88    gccggccatgtctgccgccgcctg 111
             ||||||||||||||||||||||||
Sbjct: 32172 gccggccatgtctgccgccgcctg 32195

>dbj|AK105533.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G12, full
           insert sequence
          Length = 1726

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 88  gccggccatgtctgccgccgcctg 111
           ||||||||||||||||||||||||
Sbjct: 430 gccggccatgtctgccgccgcctg 453

>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 109     ctgtgtctccttctgcccctcc 130
               ||||||||||||||||||||||
Sbjct: 3887876 ctgtgtctccttctgcccctcc 3887897

>gb|AC147706.3| Felis catus clone RP86-363G23, complete sequence
          Length = 142721

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 108    cctgtgtctccttctgcccctcccc 132
              ||||||||||| |||||||||||||
Sbjct: 136731 cctgtgtctccctctgcccctcccc 136755

>gb|AC120544.9| Mus musculus chromosome 1, clone RP23-299N6, complete sequence
          Length = 223752

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     tagctcacctagccaaggtct 45
              |||||||||||||||||||||
Sbjct: 102362 tagctcacctagccaaggtct 102342

>gb|AC105275.3| Homo sapiens chromosome 1 clone RP11-359E8, complete sequence
          Length = 164736

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 202   ggaggaggagcgcggcgccgggagg 226
             ||||||||||||||||||| |||||
Sbjct: 58248 ggaggaggagcgcggcgcctggagg 58272

>gb|AC162866.5| Mus musculus chromosome 1, clone RP23-90B23, complete sequence
          Length = 230597

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     tagctcacctagccaaggtct 45
              |||||||||||||||||||||
Sbjct: 192853 tagctcacctagccaaggtct 192833

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                                
Query: 196     ggaggcggaggaggagcgcg-gcgccgggaggg 227
               ||||| |||||||||||||| ||||||||||||
Sbjct: 2203251 ggaggaggaggaggagcgcgagcgccgggaggg 2203283

>dbj|AK108267.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B11, full
           insert sequence
          Length = 1025

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Minus

                                            
Query: 196 ggaggcggaggaggagcgcg-gcgccgggaggg 227
           ||||| |||||||||||||| ||||||||||||
Sbjct: 229 ggaggaggaggaggagcgcgagcgccgggaggg 197

>emb|AJ505558.1|BAC505558 Bacteriophage phiKMV complete genome
          Length = 42519

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 239   ttcggcgccgacgggatgatcggcg 263
             |||||||| ||||||||||||||||
Sbjct: 12769 ttcggcgcggacgggatgatcggcg 12793

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 162    tcgtcgacgtcgtcgtcgggc 182
              |||||||||||||||||||||
Sbjct: 467335 tcgtcgacgtcgtcgtcgggc 467355



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 163     cgtcgacgtcgtcgtcgggctgcc 186
               |||||| |||||||||||||||||
Sbjct: 1132068 cgtcgaggtcgtcgtcgggctgcc 1132091

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                                
Query: 196     ggaggcggaggaggagcgcg-gcgccgggaggg 227
               ||||| |||||||||||||| ||||||||||||
Sbjct: 2211032 ggaggaggaggaggagcgcgagcgccgggaggg 2211064

>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                              
Query: 196   ggaggcggaggaggagcgcg-gcgccgggaggg 227
             ||||| |||||||||||||| ||||||||||||
Sbjct: 99945 ggaggaggaggaggagcgcgagcgccgggaggg 99977

>gb|U88875.1|MAU88875 Mycobacterium avium hypoxanthine-guanine phosphoribosyl transferase
           gene, complete cds
          Length = 840

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 162 tcgtcgacgtcgtcgtcgggc 182
           |||||||||||||||||||||
Sbjct: 403 tcgtcgacgtcgtcgtcgggc 423

>dbj|D85843.1| Bothrops jararaca mRNA for bradykinin-potentiating peptide and
           C-type natriuretic peptide precursor, complete cds
          Length = 1722

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 195 cggaggcggaggaggagcgcg 215
           |||||||||||||||||||||
Sbjct: 829 cggaggcggaggaggagcgcg 849

>gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete
             sequence
          Length = 249995

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   gatcgtcgacgtcgtcgtcg 179
             ||||||||||||||||||||
Sbjct: 77808 gatcgtcgacgtcgtcgtcg 77789

>gb|BT018625.1| Zea mays clone EL01N0502F08.d mRNA sequence
          Length = 1332

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 tgtctccttctgcccctccc 131
           ||||||||||||||||||||
Sbjct: 102 tgtctccttctgcccctccc 121

>gb|AC139025.9| Mus musculus chromosome 8, clone RP23-426K13, complete sequence
          Length = 203230

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 110   tgtgtctccttctgcccctccccc 133
             ||||||||| ||||||||||||||
Sbjct: 16520 tgtgtctccatctgcccctccccc 16543

>gb|AC127551.7| Mus musculus BAC clone RP24-547H23 from chromosome 8, complete sequence
          Length = 204342

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 110   tgtgtctccttctgcccctccccc 133
             ||||||||| ||||||||||||||
Sbjct: 19809 tgtgtctccatctgcccctccccc 19786

>gb|AC147707.5| Canis Familiaris, clone XX-10C7, complete sequence
          Length = 199690

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    tctccttctgcccctccccc 133
              ||||||||||||||||||||
Sbjct: 167001 tctccttctgcccctccccc 167020

>gb|AC147784.3| Canis Familiaris, clone XX-25F3, complete sequence
          Length = 176851

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    tctccttctgcccctccccc 133
              ||||||||||||||||||||
Sbjct: 167355 tctccttctgcccctccccc 167374

>ref|XM_860979.1| PREDICTED: Canis familiaris hypothetical protein LOC610128
           (LOC610128), mRNA
          Length = 1220

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 195 cggaggcggaggaggagcgcggcg 218
           ||||||||||||||| ||||||||
Sbjct: 91  cggaggcggaggaggcgcgcggcg 68

>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence
          Length = 141578

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tctccttctgcccctccccc 133
             ||||||||||||||||||||
Sbjct: 48990 tctccttctgcccctccccc 49009

>ref|NM_001896.2| Homo sapiens casein kinase 2, alpha prime polypeptide (CSNK2A2),
           mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 196 ggaggcggaggaggagcgcggcgccggg 223
           ||||| ||||||||||||||||| ||||
Sbjct: 35  ggaggaggaggaggagcgcggcggcggg 8

>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 194    acggaggcggaggaggagcgcggc 217
              |||||||||||||||| |||||||
Sbjct: 131499 acggaggcggaggaggggcgcggc 131522

>emb|AJ630365.1| Canis familiaris MHC class II region on chromosome CFA12, partial
             sequence, BAC clone 181g17, containing DLA-DMB, DLA-DMA
             and BRD2 genes, GL004-like protein pseudogene, DLA-DOA
             gene, RPL26 and RPL11 pseudogenes, DLA-DPB1 pseudogenes,
             DLA-DPA1 pseudogene, UPF0224 family pseudogene and partial
             col11a2 gene
          Length = 155570

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tctccttctgcccctccccc 133
             ||||||||||||||||||||
Sbjct: 84379 tctccttctgcccctccccc 84398

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    cgatcgtcgacgtcgtcgtc 178
              ||||||||||||||||||||
Sbjct: 219199 cgatcgtcgacgtcgtcgtc 219180

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 202      ggaggaggagcgcggcgccgggag 225
                |||||||||| |||||||||||||
Sbjct: 11815971 ggaggaggagggcggcgccgggag 11815994



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 202      ggaggaggagcgcggcgccgggag 225
                |||||||||| |||||||||||||
Sbjct: 11815867 ggaggaggagggcggcgccgggag 11815890

>gb|AC009107.11| Homo sapiens chromosome 16 clone RP11-459F6, complete sequence
          Length = 208220

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 196   ggaggcggaggaggagcgcggcgccggg 223
             ||||| ||||||||||||||||| ||||
Sbjct: 69421 ggaggaggaggaggagcgcggcggcggg 69448

>gb|AF106004.1|AF106004 Streptomyces coelicolor whiJ sporulation regulatory locus
          Length = 3842

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 194  acggaggcggaggaggagcgcggc 217
            |||||||||||||||| |||||||
Sbjct: 2421 acggaggcggaggaggggcgcggc 2444

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 197     gaggcggaggaggagcgcggcgccggga 224
               ||||||| ||||||| ||||||||||||
Sbjct: 4345728 gaggcggtggaggagagcggcgccggga 4345755

>dbj|AP006343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1032F05
          Length = 151412

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   ggaggaggagcgcggcgccgggag 225
             |||||||||| |||||||||||||
Sbjct: 48271 ggaggaggagggcggcgccgggag 48294



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   ggaggaggagcgcggcgccgggag 225
             |||||||||| |||||||||||||
Sbjct: 48167 ggaggaggagggcggcgccgggag 48190

>dbj|AK110169.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-G03, full
            insert sequence
          Length = 3628

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  ccttgagttcggcgccgacg 251
            ||||||||||||||||||||
Sbjct: 3212 ccttgagttcggcgccgacg 3193

>gb|AC084291.27| Homo sapiens 12 BAC RP11-465L8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125429

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   ggaggcggaggaggagcgcg 215
             ||||||||||||||||||||
Sbjct: 35949 ggaggcggaggaggagcgcg 35930

>emb|AJ001218.1|HSCGG16P5 Homo sapiens DNA for (CGG)n trinucleotide repeat region, isolate
            CL16-1 (Chr.16)
          Length = 2837

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 196  ggaggcggaggaggagcgcggcgccggg 223
            ||||| ||||||||||||||||| ||||
Sbjct: 1213 ggaggaggaggaggagcgcggcggcggg 1240


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,601,195
Number of Sequences: 3902068
Number of extensions: 2601195
Number of successful extensions: 75050
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 74415
Number of HSP's gapped (non-prelim): 653
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)