ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart28c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5621_ARATH (O81488) PHD finger protein At5g26210 175 1e-51
2CAN12_MOUSE (Q9ER56) Calpain-12 (EC 3.4.22.-) 29 8.3
3CG21_CANAL (P47829) G2/mitotic-specific cyclin CYB1 29 8.3

>Y5621_ARATH (O81488) PHD finger protein At5g26210|
          Length = 255

 Score =  175 bits (444), Expect(2) = 1e-51
 Identities = 84/114 (73%), Positives = 92/114 (80%)
 Frame = +1

Query: 142 AGGAYVARTAEEVFRDLRGRRAGMIKALTEDVDKFFKLCDPEKENLCLYGYPNETWEVTL 321
           AGGAY  RT EEVFRD +GRRAGMIKALT DV +FF+LCDPEKENLCLYG+PNE WEV L
Sbjct: 3   AGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNL 62

Query: 322 XXXXXXXXXXXXXLGINFARDGMNEKDWLALVAVHSDSWLLSVAFYFGARFGFD 483
                        LGINFARDGM EKDWL+LVAVHSD+WLL+VAF+FGARFGFD
Sbjct: 63  PAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFD 116



 Score = 47.4 bits (111), Expect(2) = 1e-51
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +3

Query: 486 NRRRLFNMINNLPTIYEVVTGIAKKQSKE 572
           +R+RLFNM+N+LPTI+EVV G AKKQ K+
Sbjct: 119 DRKRLFNMVNDLPTIFEVVAGTAKKQGKD 147



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>CAN12_MOUSE (Q9ER56) Calpain-12 (EC 3.4.22.-)|
          Length = 720

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 354 FRDLWGHFLSWQGHF 310
           F++LWGH +SWQ  F
Sbjct: 616 FQELWGHLMSWQATF 630



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>CG21_CANAL (P47829) G2/mitotic-specific cyclin CYB1|
          Length = 492

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 272 SFSGSQSLKNLSTSSVRALIMPARRPRRSRKTSSAVRATYAPPAPAPSMGGRRQ 111
           S S S +  N   + + +L +P+R P++ + T S+         P P +G R Q
Sbjct: 122 SSSNSSNNNNNDANRLASLAVPSRLPQKRQATESSTNLVEKLRVPQPEVGERSQ 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,879,500
Number of Sequences: 219361
Number of extensions: 1144720
Number of successful extensions: 3623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3619
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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