ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28b07 |
|---|---|
| Clone Library Name | barley_pub |
>PI5K3_ARATH (O48709) Phosphatidylinositol-4-phosphate 5-kinase 3 (EC 2.7.1.68)| (AtPIP5K3) (1-phosphatidylinositol-4-phosphate kinase 3) (PtdIns(4)P-5-kinase 3) (Diphosphoinositide kinase 3) Length = 705 Score = 34.7 bits (78), Expect = 0.15 Identities = 18/42 (42%), Positives = 26/42 (61%) Frame = +1 Query: 166 PARAQHGFAMVKNFRKRSLESDAADNSDDEGTRRVALEEIRY 291 PA+A+ V F + + E DA DNS+ +GTR+ A+E I Y Sbjct: 614 PAKAEQ----VSRFEEETWEEDAIDNSNPKGTRKEAVEVILY 651
>CI078_PONPY (Q5RC87) Protein C9orf78 homolog| Length = 289 Score = 33.5 bits (75), Expect = 0.33 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 12/113 (10%) Frame = +1 Query: 199 KNFRKRSLESDAADNSDDEGTRRVALEEIRYMQKLRERKLGIPXXXXXXXXXXXXXXX-- 372 K FR+R +S++ ++ D R+ LEE R +Q LR+R G+ Sbjct: 6 KIFRRRRGDSESEEDEQDSEEVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQEETTLV 65 Query: 373 ----------XXXXXXXXXXXXXXXXXEEDLVLQDTFAQETAVTIEDPNMLRY 501 EEDL L +F+ ET ED +M++Y Sbjct: 66 DDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKY 118
>CI078_HUMAN (Q9NZ63) Protein C9orf78 (Hepatocellular carcinoma-associated| antigen 59) Length = 289 Score = 33.5 bits (75), Expect = 0.33 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 12/113 (10%) Frame = +1 Query: 199 KNFRKRSLESDAADNSDDEGTRRVALEEIRYMQKLRERKLGIPXXXXXXXXXXXXXXX-- 372 K FR+R +S++ ++ D R+ LEE R +Q LR+R G+ Sbjct: 6 KIFRRRRGDSESEEDEQDSEEVRLKLEETREVQNLRKRPNGVSAVALLVGEKVQEETTLV 65 Query: 373 ----------XXXXXXXXXXXXXXXXXEEDLVLQDTFAQETAVTIEDPNMLRY 501 EEDL L +F+ ET ED +M++Y Sbjct: 66 DDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKY 118
>MSX3_MOUSE (P70354) Homeobox protein MSX-3| Length = 204 Score = 33.1 bits (74), Expect = 0.43 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +2 Query: 44 ATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHRPERSTGSPW 196 A+KPG+ P P+ HS PR PSPP P R+H+ R +P+ Sbjct: 55 ASKPGAW----PPPVAHSCPPRAPSPP-------PCTLRKHKTNRKPRTPF 94
>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene| AF4) (FEL protein) Length = 1210 Score = 32.7 bits (73), Expect = 0.56 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = +2 Query: 20 EGTGPNFRATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNPLK---SRQHRPERST 184 E G + AT DP P SK+PR P P A HP + + ++Q P+R T Sbjct: 543 ESKGSSDSATSQEHSESKDPPPKSSSKAPRAP-PEAPHPGKRSCQKSPAQQEPPQRQT 599
>IAA15_ORYSA (Q6AT10) Auxin-responsive protein IAA15 (Indoleacetic acid-induced| protein 15) Length = 212 Score = 32.3 bits (72), Expect = 0.73 Identities = 17/56 (30%), Positives = 32/56 (57%) Frame = +1 Query: 136 GKESSQIPPAPARAQHGFAMVKNFRKRSLESDAADNSDDEGTRRVALEEIRYMQKL 303 G +++ PP+P G+ V+ FRK +L + AA +S +VA++ Y++K+ Sbjct: 68 GSTATESPPSPKARVVGWPPVRAFRKNALAALAAASSSKAKFVKVAVDGAPYLRKV 123
>CI078_MOUSE (Q3TQI7) Protein C9orf78 homolog| Length = 289 Score = 32.3 bits (72), Expect = 0.73 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 12/113 (10%) Frame = +1 Query: 199 KNFRKRSLESDAADNSDDEGTRRVALEEIRYMQKLRERKLGIPXXXXXXXXXXXXXXXXX 378 K FR+R +S++ ++ + R+ LEE +Q LR+R G+ Sbjct: 6 KTFRRRRADSESEEDEQESEEVRLKLEETGEVQNLRKRPNGVSAAALLVGEKVQEETTLV 65 Query: 379 XXXXXXXX------------XXXXXXXEEDLVLQDTFAQETAVTIEDPNMLRY 501 EEDL L +F+ ET ED +M++Y Sbjct: 66 DDPFQMATGGMVDMKKLKERGKDKVSEEEDLHLGTSFSAETNRRDEDADMMKY 118
>PSL1_HUMAN (Q8TCT7) Signal peptide peptidase-like 2B (EC 3.4.23.-) (Protein| SPP-like 2B) (Protein SPPL2b) (Intramembrane protease 4) (IMP4) (Presenilin-like protein 1) Length = 592 Score = 32.0 bits (71), Expect = 0.95 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%) Frame = +2 Query: 26 TGPNFRATKPGS----LRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHRPERST 184 TG F P S D P P + S +P P PP+ PA +P + Q R++ Sbjct: 500 TGSGFAKVLPPSPWAPAPADGPQPPKDSATPLSPQPPSEEPATSPWPAEQSPKSRTS 556
>PSMF1_PONPY (Q5RDN3) Proteasome inhibitor PI31 subunit| Length = 271 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +2 Query: 101 SPRRPSPPATHPARNPLKSRQHRPERSTGSPW 196 SP R PPAT +PL+ H P S PW Sbjct: 153 SPHREFPPATAREVDPLRIPPHHPHTSRQPPW 184
>PSMF1_HUMAN (Q92530) Proteasome inhibitor PI31 subunit (hPI31)| Length = 271 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +2 Query: 101 SPRRPSPPATHPARNPLKSRQHRPERSTGSPW 196 SP R PPAT +PL+ H P S PW Sbjct: 153 SPHREFPPATAREVDPLRIPPHHPHTSRQPPW 184
>EMIL2_HUMAN (Q9BXX0) EMILIN-2 precursor (Elastin microfibril interface-located| protein 2) (Elastin microfibril interfacer 2) (Protein FOAP-10) Length = 1053 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = +2 Query: 32 PNFRATKPGSLRRDDPNPLQHSKSPRRPSPPAT--HPARNPL---KSRQHRPERSTGS 190 P+ +A P PLQ +P RPS PAT P R P+ + + RP + GS Sbjct: 784 PSAKAPSPPPPAEAPKEPLQPEPAPPRPSGPATAEDPGRRPVLPQRPPEERPPQPPGS 841
>CENG3_MOUSE (Q8VHH5) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 3) (AGAP-3) (MR1-interacting protein) (MRIP-1) (CRAM-associated GTPase) (CRAG) Length = 910 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +2 Query: 44 ATKPGSLRRDDPNPLQH-SKSPRRPSPPATHPARNPLKSRQHRPERSTGSP 193 A P S++ P + S SP+ PP+ H R ++HR ++STG+P Sbjct: 545 AALPASMQHPASGPAESLSSSPKLEPPPSPHSNR-----KKHRGKKSTGTP 590
>SIRT4_MOUSE (Q8R216) NAD-dependent deacetylase sirtuin-4 (EC 3.5.1.-)| (SIR2-like protein 4) Length = 333 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = +2 Query: 11 LSTEGTGPNFRATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARN-----PLKSRQHRPE 175 +STE + P++R+ K G R D P+QH R + ARN S Q P Sbjct: 62 ISTESSIPDYRSEKVGLYARTDRRPIQHIDFVRSAPVRQRYWARNFVGWPQFSSHQPNPA 121 Query: 176 RSTGSPW 196 S W Sbjct: 122 HWALSNW 128
>POLS_EEEV3 (P27284) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike g Length = 1240 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/55 (29%), Positives = 23/55 (41%) Frame = +2 Query: 5 ALLSTEGTGPNFRATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHR 169 A L+ + PN A P ++ P P +RP PPA R P ++ R Sbjct: 48 ANLTLKQRAPNPPAGPPAKRKKPAPKPKPAQAKKKRPPPPAKKQKRKPKPGKRQR 102
>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +2 Query: 26 TGPNFRATKPGSLRRDDPNPLQHSKSPRRPSP-PATHPARNPLKSRQHRPERST 184 + P R + PG + P PLQ P +P PAT R P R H P R++ Sbjct: 983 SNPQHRESWPGMGSGEAPTPLQ---PPEEVTPHPATPARRPPSPRRSHHPRRNS 1033
>PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = +2 Query: 56 GSLRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHRPE 175 GS +P P SPRRP P T PA L S R + Sbjct: 901 GSQPSSNPTPSPLDASPRRPPGPTTSPASTSLSSPGQRDD 940
>SWR1_USTMA (Q4P328) Helicase SWR1 (EC 3.6.1.-)| Length = 1830 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +1 Query: 118 AAGDSSGKESSQIPPAPARAQHGFAMVKNFRKRSLESDAADNSDDEGTRR 267 AA + + KE S A + AM+K + +D+ D+SDDEG+ R Sbjct: 650 AAAEKAEKEKSDKEQLNAILEQSTAMLKKQHEVMTRADSLDDSDDEGSDR 699
>CRF_PIG (P06296) Corticoliberin precursor (Corticotropin-releasing factor)| (CRF) (Corticotropin-releasing hormone) Length = 191 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 4/39 (10%) Frame = +2 Query: 86 LQHSKSPRR----PSPPATHPARNPLKSRQHRPERSTGS 190 LQ PRR PS PA A N L SRQ PER S Sbjct: 111 LQQLPLPRRRLDSPSGPAERGAENALSSRQEAPERERRS 149
>SIRT4_HUMAN (Q9Y6E7) NAD-dependent deacetylase sirtuin-4 (EC 3.5.1.-)| (SIR2-like protein 4) Length = 314 Score = 30.4 bits (67), Expect = 2.8 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Frame = +2 Query: 11 LSTEGTGPNFRATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARN-----PLKSRQHRPE 175 +STE P++R+ K G R D P+QH R + ARN S Q P Sbjct: 65 ISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQPNPA 124 Query: 176 RSTGSPW 196 S W Sbjct: 125 HWALSTW 131
>IAA5_ORYSA (Q59AF3) Auxin-responsive protein IAA5 (Indoleacetic acid-induced| protein 5) Length = 271 Score = 30.4 bits (67), Expect = 2.8 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 10/102 (9%) Frame = +1 Query: 28 GPELPGHQAGVTPTRRP*SAPAFQISTTTLAAGDSSGKESSQI--PPAPARAQHGFAMVK 201 GP P + P S+P S+ ++AA + +++ PPA G+ V+ Sbjct: 66 GPLPPTTTKAASKRAFPDSSPRHGASSGSVAAAAACQDKAAPAAAPPAAKAQVVGWPPVR 125 Query: 202 NFRKRSLESDAA-DNSDDEGTR-------RVALEEIRYMQKL 303 N+RK +L + A+ +D+GT +V+++ Y++K+ Sbjct: 126 NYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKV 167
>UL101_HCMVA (P16826) Hypothetical protein UL101| Length = 115 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 113 PSPPATHPARNPLKSRQHRPERSTGS 190 P PP HP R+ L S+ RP R G+ Sbjct: 65 PPPPPVHPVRDQLSSQLVRPSRGLGA 90
>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) Length = 5085 Score = 30.0 bits (66), Expect = 3.6 Identities = 26/104 (25%), Positives = 42/104 (40%) Frame = +1 Query: 16 HRGNGPELPGHQAGVTPTRRP*SAPAFQISTTTLAAGDSSGKESSQIPPAPARAQHGFAM 195 H GP P QA TP++ P A K + Q+PPAPA+A Sbjct: 906 HPQTGPAAPSKQAP-TPSQSP--------------AAQGPAKSTGQLPPAPAKA------ 944 Query: 196 VKNFRKRSLESDAADNSDDEGTRRVALEEIRYMQKLRERKLGIP 327 K+ ++ AA+N + + + ++ +K K+G P Sbjct: 945 --TAVKKEAKAAAAENLESKPEQAPTAKKTEKDKKPPPAKVGKP 986
>PSMF1_MOUSE (Q8BHL8) Proteasome inhibitor PI31 subunit| Length = 271 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 95 SKSPRRPSPPATHPARNPLKSRQHRPERSTGSPW 196 + SP R PPAT +PL+ HRP S W Sbjct: 151 ANSPPREFPPATAREVDPLQISSHRPHTSRQPAW 184
>T2FA_HUMAN (P35269) Transcription initiation factor IIF alpha subunit (EC| 2.7.11.1) (TFIIF-alpha) (Transcription initiation factor RAP74) (General transcription factor IIF polypeptide 1 74 kDa subunit protein) Length = 517 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +1 Query: 121 AGDSSGKESSQIPPAPARAQHGFAMVKNFRKRSLESDAADNSDD 252 A D+SG+E ++P A +A K +K+ + +A ++SDD Sbjct: 220 ASDASGEEGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFEDSDD 263
>PLMN_MACMU (P12545) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 810 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 23 GTGPNFRATKPGSLRRDDPNPLQHSKSPRRPS-PPATHPARNPLKSRQHRPERSTGSPW 196 G G N+R T R S SP RP+ PATHP+ ++ P+ PW Sbjct: 106 GNGKNYRGTM-SKTRTGITCQKWSSTSPHRPTFSPATHPSEGLEENYCRNPDNDGQGPW 163
>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein| Length = 1259 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +2 Query: 26 TGPNFRATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNPLKSR-QHRPERSTGSP 193 T P RA P DP+ +Q +++P +P P +T P + P +++ Q P+ P Sbjct: 311 TEPQLRAPSP------DPDLVQRTEAPPQPPPLSTQPPQGPPEAQLQPAPQPQVQRP 361
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = +2 Query: 32 PNFRATKPGSLRRDDPNPLQHSKSPRRPSP----PATHPARNPLKSRQHRPERSTGSP 193 P A+ S + P ++ PRR +P P++ PAR P+ + + P R+ G+P Sbjct: 235 PRPPASSASSPQAAAPAAPSATRLPRRTTPSAPRPSSRPARPPIPAARPPPRRTPGTP 292
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +2 Query: 14 STEGTGPNFRATKPGSLRRDDPNPLQHSKSPRRP-SPPATH 133 S+EG G +P S R D P P H SP P SP A H Sbjct: 1371 SSEGGGTPQPPPRPPSPRYDAPPPTLHHHSPHSPHSPHARH 1411
>CT151_HUMAN (Q8NC74) Protein C20orf151| Length = 664 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Frame = +2 Query: 29 GPNFRATKPGSLRRDD---PNPLQHSKSPRRPSPPATHPARNPLKSRQHRPE 175 G + PGS +D P P H + P P PP P K+ RPE Sbjct: 518 GSQLSLSSPGSTEDEDTGRPLPPPHPQPPPHPQPPDLDGHPEPSKAEVLRPE 569
>KIT_MOUSE (P05532) Mast/stem cell growth factor receptor precursor (EC| 2.7.10.1) (SCFR) (Proto-oncogene tyrosine-protein kinase Kit) (c-kit) Length = 975 Score = 29.3 bits (64), Expect = 6.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 89 QHSKSPRRPSPPATHPARNPL 151 Q S SP PSPP+ HPA++ L Sbjct: 26 QPSASPGEPSPPSIHPAQSEL 46
>MMP9_BOVIN (P52176) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 712 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Frame = +2 Query: 32 PNFRATKPGSLRRDDPNPLQHSKSPR---RPSPPAT 130 P +R T+ L RDD +QH PR P PP T Sbjct: 421 PMYRFTEEHPLHRDDVQGIQHLYGPRPEPEPRPPTT 456
>GUAA_FUSNN (Q8RDR4) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 512 Score = 29.3 bits (64), Expect = 6.2 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 5/46 (10%) Frame = +1 Query: 85 APAFQI---STTTLAAGDSSGKE--SSQIPPAPARAQHGFAMVKNF 207 AP F+I + +++AA ++S K + Q P +QHGF M+KNF Sbjct: 140 APDFKIIAHTDSSIAAIENSDKNIYAFQYHPEVTHSQHGFDMLKNF 185
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 29.3 bits (64), Expect = 6.2 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +2 Query: 62 LRRDDPNPLQHSKSPRRPS-PPATHPARNPLKSRQHRPERSTG 187 +RR +PL+ S+SPRR S P KSR R RS G Sbjct: 447 IRRRSRSPLRRSRSPRRRSRSPRRRDRSRRSKSRLRRRSRSRG 489
>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)| (Restrictedly overexpressed proliferation-associated protein) (Ropp 120) Length = 981 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/62 (24%), Positives = 26/62 (41%) Frame = +2 Query: 8 LLSTEGTGPNFRATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHRPERSTG 187 L S +G + KP R + +SP+ + P+ P+ PL+ + PE Sbjct: 107 LSSAAKSGTEKKKEKPQGQREKKEESHSNDQSPQIRASPSPQPSSQPLQIHRQTPESKNA 166 Query: 188 SP 193 +P Sbjct: 167 TP 168
>ZN541_HUMAN (Q9H0D2) Zinc finger protein 541| Length = 792 Score = 29.3 bits (64), Expect = 6.2 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 41 RATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNP 148 R PGS RRD L+ + P + P+ P+RNP Sbjct: 82 REASPGSTRRDAKGGLKVAAVPTPLAAPSLDPSRNP 117
>DRD4_RAT (P30729) D(4) dopamine receptor (Dopamine D4 receptor) (D(2C)| dopamine receptor) Length = 387 Score = 28.9 bits (63), Expect = 8.1 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%) Frame = +2 Query: 92 HSKSPRRPS---PPATHPARNPLKS 157 HS++PRRPS PP + P + PL S Sbjct: 226 HSRAPRRPSGPGPPVSDPTQGPLFS 250
>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs| Length = 716 Score = 28.9 bits (63), Expect = 8.1 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +2 Query: 74 DPNPLQHSKSPRRPSPPATHPARNPLKS 157 +P P+Q + +P P+PPA PA+ P K+ Sbjct: 639 EPAPVQ-TPAPAEPAPPAKTPAKTPTKA 665
>UL34_HCMVA (P16812) Hypothetical protein UL34| Length = 407 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +2 Query: 62 LRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHRPE 175 LR DP PL SK PR P T + K ++ E Sbjct: 288 LRHSDPAPLHESKKPRNARRPRTRVPPHEQKPEENEEE 325
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/49 (38%), Positives = 21/49 (42%) Frame = +2 Query: 47 TKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHRPERSTGSP 193 T P R P P + S SPRR SPP S P+R T SP Sbjct: 574 TPPPRRRTPSPPPRRRSPSPRRYSPPIQR-----RYSPSPPPKRRTASP 617
>CCDC6_HUMAN (Q16204) Coiled-coil domain-containing protein 6 (H4 protein)| (Papillary thyroid carcinoma-encoded protein) Length = 585 Score = 28.9 bits (63), Expect = 8.1 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +2 Query: 41 RATKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNP 148 R+ P +R P P ++++P +P PP P P Sbjct: 416 RSNSPDKFKRPTPPPSPNTQTPVQPPPPPPPPPMQP 451
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/49 (38%), Positives = 21/49 (42%) Frame = +2 Query: 47 TKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHRPERSTGSP 193 T P R P P + S SPRR SPP S P+R T SP Sbjct: 588 TPPPRRRTPSPPPRRRSPSPRRYSPPIQR-----RYSPSPPPKRRTASP 631
>MMP9_HUMAN (P14780) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) [Contains: 67 kDa matrix metalloproteinase-9; 82 kDa matrix metalloproteinase-9] Length = 707 Score = 28.9 bits (63), Expect = 8.1 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Frame = +2 Query: 32 PNFRATKPGSLRRDDPNPLQHSKSPR---RPSPPAT---HPARNPL-----KSRQHRPER 178 P +R T+ L +DD N ++H PR P PP T P P H ER Sbjct: 421 PMYRFTEGPPLHKDDVNGIRHLYGPRPEPEPRPPTTTTPQPTAPPTVCPTGPPTVHPSER 480 Query: 179 STGSP 193 T P Sbjct: 481 PTAGP 485
>GCSP_HUMAN (P23378) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1020 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +3 Query: 3 GLCLAPRERARTSGPPSRGHSDATTLIRSSIPNLHDDPRRRRL 131 G C APR R +SG + A+ L+ +P HDD RR + Sbjct: 27 GPCWAPRSRDSSSGGGDSAAAGASRLLERLLPR-HDDFARRHI 68
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/49 (38%), Positives = 21/49 (42%) Frame = +2 Query: 47 TKPGSLRRDDPNPLQHSKSPRRPSPPATHPARNPLKSRQHRPERSTGSP 193 T P R P P + S SPRR SPP S P+R T SP Sbjct: 593 TPPPRRRTPSPPPRRRSPSPRRYSPPIQR-----RYSPSPPPKRRTASP 636
>PLMN_HUMAN (P00747) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Angiostatin; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 810 Score = 28.9 bits (63), Expect = 8.1 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Frame = +2 Query: 23 GTGPNFRATKPGSLRRDDPNPLQHSKSPRRPS-PPATHPARNPLKSRQHRPERSTGSPW 196 G G N+R T + S SP RP PATHP+ ++ P+ PW Sbjct: 106 GNGKNYRGTM-SKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQGPW 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,803,448 Number of Sequences: 219361 Number of extensions: 973989 Number of successful extensions: 4876 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 4301 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4846 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
