ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28b06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088P15, full insert sequence Length = 1478 Score = 172 bits (87), Expect = 7e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 324 gccgcggcgcgcgacgccaagaagaagaggggtaaccgctcgtcggccaagctgaagcag 383 ||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 213 gccgccgcgcgcgacgcgaagaagaagagggggaaccggtcgtcggcgaagctgaagcag 272 Query: 384 tgcaagctcgacgcgcgccgcgagcagtggctgtcccaagtcaaggatgggaaggaggc 442 |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 273 tgcaagctcgacgcgcgccgcgagcagtggctttcgcaagtcaaggatggaaaggaggc 331
>dbj|AK068918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169C17, full insert sequence Length = 2262 Score = 172 bits (87), Expect = 7e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 324 gccgcggcgcgcgacgccaagaagaagaggggtaaccgctcgtcggccaagctgaagcag 383 ||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 213 gccgccgcgcgcgacgcgaagaagaagagggggaaccggtcgtcggcgaagctgaagcag 272 Query: 384 tgcaagctcgacgcgcgccgcgagcagtggctgtcccaagtcaaggatgggaaggaggc 442 |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 273 tgcaagctcgacgcgcgccgcgagcagtggctttcgcaagtcaaggatggaaaggaggc 331
>dbj|AK064338.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G12, full insert sequence Length = 1477 Score = 172 bits (87), Expect = 7e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 324 gccgcggcgcgcgacgccaagaagaagaggggtaaccgctcgtcggccaagctgaagcag 383 ||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 212 gccgccgcgcgcgacgcgaagaagaagagggggaaccggtcgtcggcgaagctgaagcag 271 Query: 384 tgcaagctcgacgcgcgccgcgagcagtggctgtcccaagtcaaggatgggaaggaggc 442 |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 272 tgcaagctcgacgcgcgccgcgagcagtggctttcgcaagtcaaggatggaaaggaggc 330
>ref|XM_472773.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1026 Score = 143 bits (72), Expect = 7e-31 Identities = 87/92 (94%) Strand = Plus / Plus Query: 324 gccgcggcgcgcgacgccaagaagaagaggggtaaccgctcgtcggccaagctgaagcag 383 ||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 31 gccgccgcgcgcgacgcgaagaagaagagggggaaccggtcgtcggcgaagctgaagcag 90 Query: 384 tgcaagctcgacgcgcgccgcgagcagtggct 415 |||||||||||||||||||||||||||||||| Sbjct: 91 tgcaagctcgacgcgcgccgcgagcagtggct 122
>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence Length = 131246 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Minus Query: 357 aaccgctcgtcggccaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 415 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122372 aaccggtcgtcggcgaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 122314 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 324 gccgcggcgcgcgacgccaagaagaagaggg 354 ||||| ||||||||||| ||||||||||||| Sbjct: 122519 gccgccgcgcgcgacgcgaagaagaagaggg 122489
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence Length = 139418 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Minus Query: 357 aaccgctcgtcggccaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 415 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16224 aaccggtcgtcggcgaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 16166 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 324 gccgcggcgcgcgacgccaagaagaagaggg 354 ||||| ||||||||||| ||||||||||||| Sbjct: 16371 gccgccgcgcgcgacgcgaagaagaagaggg 16341
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Minus Query: 357 aaccgctcgtcggccaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 415 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23126032 aaccggtcgtcggcgaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 23125974 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 324 gccgcggcgcgcgacgccaagaagaagaggg 354 ||||| ||||||||||| ||||||||||||| Sbjct: 23126179 gccgccgcgcgcgacgcgaagaagaagaggg 23126149
>gb|DQ354158.1| Vitis pseudoreticulata clone EST-266 unknown mRNA Length = 777 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 376 tgaagcagtgcaagctcgacgcgcgccgcgagcagtggctgtcccaagtcaag 428 ||||||||||||||||||| || ||||||||||| ||||| ||| |||||||| Sbjct: 86 tgaagcagtgcaagctcgatgctcgccgcgagcaatggctttccaaagtcaag 138
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 365 gtcggccaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 415 |||||| |||||||||||| |||||||||||| ||| || ||||||||||| Sbjct: 22386356 gtcggcgaagctgaagcagagcaagctcgacgtgcggcgggagcagtggct 22386306
>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1267B06 Length = 156989 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 365 gtcggccaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 415 |||||| |||||||||||| |||||||||||| ||| || ||||||||||| Sbjct: 145000 gtcggcgaagctgaagcagagcaagctcgacgtgcggcgggagcagtggct 144950
>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_A05 Length = 113326 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 365 gtcggccaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 415 |||||| |||||||||||| |||||||||||| ||| || ||||||||||| Sbjct: 42575 gtcggcgaagctgaagcagagcaagctcgacgtgcggcgggagcagtggct 42525
>dbj|AK119275.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-B07, full insert sequence Length = 3265 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 365 gtcggccaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 415 |||||| |||||||||||| |||||||||||| ||| || ||||||||||| Sbjct: 355 gtcggcgaagctgaagcagagcaagctcgacgtgcggcgggagcagtggct 405
>dbj|AK068477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153F14, full insert sequence Length = 1481 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 365 gtcggccaagctgaagcagtgcaagctcgacgcgcgccgcgagcagtggct 415 |||||| |||||||||||| |||||||||||| ||| || ||||||||||| Sbjct: 249 gtcggcgaagctgaagcagagcaagctcgacgtgcggcgggagcagtggct 299
>gb|AF533648.1| Musa acuminata alpha-amylase precursor, mRNA, complete cds Length = 1953 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 376 tgaagcagtgcaagctcgacgcgcgccgcgagcagtggctgtcccaagt 424 ||||||||||||||||||| || | |||||||||||||| |||||||| Sbjct: 84 tgaagcagtgcaagctcgatgcaaggcgcgagcagtggctctcccaagt 132
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 314 gcccgcatcggccgcggcgcgcgacgc 340 |||||||||| |||||||||||||||| Sbjct: 183323 gcccgcatcgaccgcggcgcgcgacgc 183297
>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence Length = 219818 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 19 tttgcctttgctttcttctctt 40 |||||||||||||||||||||| Sbjct: 135406 tttgcctttgctttcttctctt 135385
>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence Length = 204309 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 19 tttgcctttgctttcttctctt 40 |||||||||||||||||||||| Sbjct: 196349 tttgcctttgctttcttctctt 196370
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 47 aacctccgccctccctccctcgcctcgcccccg 79 ||||||| ||| ||||||| ||||||||||||| Sbjct: 1700659 aacctcctcccgccctcccacgcctcgcccccg 1700691
>gb|DQ368223.1| Uncultured planctomycete clone JK597 16S ribosomal RNA gene, partial sequence Length = 739 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 435 aaggaggccacggccaagcctttgccagcagccgcgg 471 ||||| |||||||| || ||| ||||||||||||||| Sbjct: 409 aaggaagccacggctaaccctgtgccagcagccgcgg 445
>ref|XM_566974.1| Cryptococcus neoformans var. neoformans JEC21 diaminohydroxyphosphoribosylaminopyrimidine deaminase (CNA06250) partial mRNA Length = 690 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 47 aacctccgccctccctccctcgcctcgcccccg 79 ||||||| ||| ||||||| ||||||||||||| Sbjct: 170 aacctcctcccgccctcccacgcctcgcccccg 202
>emb|AL357150.7| Human DNA sequence from clone RP11-122C9 on chromosome 1p21.2-22.1 Contains a ribosomal protein L7 (RPL7) pseudogene, the PTBP2 gene for polypyrimidine tract binding protein 2 and a CpG island, complete sequence Length = 187378 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 aaagattttgcctttgctttc 33 ||||||||||||||||||||| Sbjct: 120975 aaagattttgcctttgctttc 120995
>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11 Length = 349723 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 aaagattttgcctttgctttc 33 ||||||||||||||||||||| Sbjct: 121370 aaagattttgcctttgctttc 121390
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 ggccgcggcgcgcgacgccaa 343 ||||||||||||||||||||| Sbjct: 293111 ggccgcggcgcgcgacgccaa 293131
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 ggccgcggcgcgcgacgccaa 343 ||||||||||||||||||||| Sbjct: 238599 ggccgcggcgcgcgacgccaa 238619
>gb|AC155818.5| Mus musculus BAC clone RP23-397H1 from chromosome 8, complete sequence Length = 191112 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 agcagtggctgtcccaagtcaagg 429 |||||||||||||| ||||||||| Sbjct: 142115 agcagtggctgtccaaagtcaagg 142138
>gb|AC165964.3| Mus musculus BAC clone RP23-334H24 from chromosome 8, complete sequence Length = 233538 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 agcagtggctgtcccaagtcaagg 429 |||||||||||||| ||||||||| Sbjct: 22169 agcagtggctgtccaaagtcaagg 22192
>ref|XM_479187.1| Oryza sativa (japonica cultivar-group), mRNA Length = 998 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 tgaagcagtgcaagctcgacgcgc 399 ||||||||||| |||||||||||| Sbjct: 775 tgaagcagtgcgagctcgacgcgc 752
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gcccgcatcggccgcggcgc 333 |||||||||||||||||||| Sbjct: 2812557 gcccgcatcggccgcggcgc 2812538
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 cgcccgcatcggccgcggcgcgcg 336 |||||||||||| ||||||||||| Sbjct: 2209551 cgcccgcatcggacgcggcgcgcg 2209574
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 cgcccgcatcggccgcggcgcgcg 336 ||||||| |||||||||||||||| Sbjct: 473546 cgcccgcgtcggccgcggcgcgcg 473569
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gcccgcatcggccgcggcgc 333 |||||||||||||||||||| Sbjct: 4040067 gcccgcatcggccgcggcgc 4040048
>ref|XM_001002522.1| PREDICTED: Mus musculus myeloid/lymphoid or mixed-lineage leukemia 3, transcript variant 3 (Mll3), mRNA Length = 6490 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctttgctttcttctcttccc 43 |||||||||||||||||||| Sbjct: 5321 ctttgctttcttctcttccc 5340
>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete sequence Length = 237281 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 cttcccaataacctccgccc 57 |||||||||||||||||||| Sbjct: 169454 cttcccaataacctccgccc 169473
>ref|XM_652015.1| Entamoeba histolytica HM-1:IMSS pescadillo (4.t00102) partial mRNA Length = 1593 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 ttttgcctttgctttcttctcttc 41 |||||||||| ||||||||||||| Sbjct: 1461 ttttgcctttcctttcttctcttc 1438
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gcaagctcgacgcgcgccgc 404 |||||||||||||||||||| Sbjct: 4894460 gcaagctcgacgcgcgccgc 4894441
>ref|XM_643834.1| Entamoeba histolytica HM-1:IMSS pescadillo (368.t00004) partial mRNA Length = 1626 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 ttttgcctttgctttcttctcttc 41 |||||||||| ||||||||||||| Sbjct: 1449 ttttgcctttcctttcttctcttc 1426
>emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C20 on chromosome 20 Contains the C20orf135 gene for chromosome 20 open reading frame 135, the TPD52L2 gene for tumor protein D52-like protein 2, the DNAJC5 gene for member 5 of DnaJ (Hsp40) homolog subfamily C, the URKL1 gene for uridine kinase-like 1, the gene for a novel protein (KIAA1196), the C20orf136 gene for chromosome 20 open reading frame 136, the 5' end of the C20orf14 gene for chromosome 20 open reading frame 14 and twelve CpG islands, complete sequence Length = 139505 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 agcagtggctgtcccaagtc 425 |||||||||||||||||||| Sbjct: 103449 agcagtggctgtcccaagtc 103468
>emb|AL049539.21|HSJ836N17 Human DNA sequence from clone RP5-836N17 on chromosome 20q11.1-11.21 Contains the 3' end of the HCK for hemopoietic cell kinase, the gene for novel protein (KIAA0255), the RPL24P1 gene for ribosomal protein L24 pseudogene 1 and two CpG Islands, complete sequence Length = 111694 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 261 gaggagccagggtctccgcccagaggga 288 |||||||||||||| | ||||||||||| Sbjct: 85076 gaggagccagggtcccagcccagaggga 85049
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 tcgcccgcatcggccgcggc 331 |||||||||||||||||||| Sbjct: 3602 tcgcccgcatcggccgcggc 3583
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cgcatcggccgcggcgcgcg 336 |||||||||||||||||||| Sbjct: 249335 cgcatcggccgcggcgcgcg 249316
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 tcgcccgcatcggccgcggc 331 |||||||||||||||||||| Sbjct: 266154 tcgcccgcatcggccgcggc 266135 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cgcatcggccgcggcgcgcg 336 |||||||||||||||||||| Sbjct: 160805 cgcatcggccgcggcgcgcg 160786
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 tcgcccgcatcggccgcggc 331 |||||||||||||||||||| Sbjct: 283924 tcgcccgcatcggccgcggc 283943
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgcatcggccgcggcgcgcg 336 |||||||||||||||||||| Sbjct: 294 cgcatcggccgcggcgcgcg 313
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 cgcccgcatcggccgcggcgcgcg 336 ||||||| |||||||||||||||| Sbjct: 1792925 cgcccgcgtcggccgcggcgcgcg 1792948
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gcccgcatcggccgcggcgc 333 |||||||||||||||||||| Sbjct: 3746671 gcccgcatcggccgcggcgc 3746652
>emb|AJ277278.1|MAC277278 Musa acuminata mRNA for putative chitinase isoform 1 Length = 1186 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cgacgccaagaagaagaggg 354 |||||||||||||||||||| Sbjct: 370 cgacgccaagaagaagaggg 389
>gb|AE012066.1| Xanthomonas axonopodis pv. citri str. 306, section 444 of 469 of the complete genome Length = 11159 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gcaagctcgacgcgcgccgc 404 |||||||||||||||||||| Sbjct: 10268 gcaagctcgacgcgcgccgc 10249
>gb|AC009785.8| Homo sapiens chromosome 7 clone RP11-198E23, complete sequence Length = 179145 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cctccctccctcgcctcgcc 75 |||||||||||||||||||| Sbjct: 130506 cctccctccctcgcctcgcc 130525
>gb|AE012525.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 433 of 460 of the complete genome Length = 11152 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gcaagctcgacgcgcgccgc 404 |||||||||||||||||||| Sbjct: 8266 gcaagctcgacgcgcgccgc 8247
>gb|AC093283.3| Homo sapiens chromosome 5 clone RP11-428C6, complete sequence Length = 206254 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttttgcctttgctttcttct 37 |||||||||||||||||||| Sbjct: 155671 ttttgcctttgctttcttct 155690
>gb|AC022138.5| Homo sapiens chromosome 5 clone CTD-2252A20, complete sequence Length = 174627 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttttgcctttgctttcttct 37 |||||||||||||||||||| Sbjct: 137961 ttttgcctttgctttcttct 137942
>gb|AY998088.1| Bordetella bronchiseptica RB50 clone Psp17 unknown gene Length = 459 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 tcgcccgcatcggccgcggc 331 |||||||||||||||||||| Sbjct: 377 tcgcccgcatcggccgcggc 358
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gcaagctcgacgcgcgccgc 404 |||||||||||||||||||| Sbjct: 4865520 gcaagctcgacgcgcgccgc 4865501
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 cgcccgcatcggccgcggcgcgcg 336 ||||||| |||||||||||||||| Sbjct: 991250 cgcccgcgtcggccgcggcgcgcg 991227
>dbj|AK041687.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630030D01 product:unclassifiable, full insert sequence Length = 4022 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctttgctttcttctcttccc 43 |||||||||||||||||||| Sbjct: 2852 ctttgctttcttctcttccc 2871
>dbj|AK033339.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030497B12 product:unclassifiable, full insert sequence Length = 1850 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctttgctttcttctcttccc 43 |||||||||||||||||||| Sbjct: 681 ctttgctttcttctcttccc 700
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 tgaagcagtgcaagctcgacgcgc 399 ||||||||||| |||||||||||| Sbjct: 25689451 tgaagcagtgcgagctcgacgcgc 25689474
>gb|AY114334.1| Uncultured Verrucomicrobia bacterium clone LD1-PB20 16S ribosomal RNA gene, partial sequence Length = 1413 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 436 aggaggccacggccaagcctttgccagcagccgcgg 471 |||| ||||||||||| || ||||||||||||||| Sbjct: 410 aggaagccacggccaactctgtgccagcagccgcgg 445
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524E08 Length = 154696 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 tgaagcagtgcaagctcgacgcgc 399 ||||||||||| |||||||||||| Sbjct: 6613 tgaagcagtgcgagctcgacgcgc 6636
>dbj|AK108114.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C03, full insert sequence Length = 1039 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 tgaagcagtgcaagctcgacgcgc 399 ||||||||||| |||||||||||| Sbjct: 775 tgaagcagtgcgagctcgacgcgc 752
>gb|AC116469.13| Mus musculus chromosome 5, clone RP23-171F16, complete sequence Length = 207364 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ctttgctttcttctcttccc 43 |||||||||||||||||||| Sbjct: 100161 ctttgctttcttctcttccc 100142
>gb|AF060568.1|AF060568 Homo sapiens promyelocytic leukemia zinc finger protein (PLZF) gene, complete cds Length = 201239 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 gccacggccaagcctttgcc 460 |||||||||||||||||||| Sbjct: 58593 gccacggccaagcctttgcc 58612
>gb|AY886673.1| Uncultured bacterium clone NF61-C3 16S ribosomal RNA gene, partial sequence Length = 366 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 cctttgccagcagccgcggg 472 |||||||||||||||||||| Sbjct: 39 cctttgccagcagccgcggg 58
>gb|AY886647.1| Uncultured bacterium clone NF50-H4 16S ribosomal RNA gene, partial sequence Length = 338 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctttgccagcagccgcggg 472 |||||||||||||||||||| Sbjct: 316 cctttgccagcagccgcggg 297
>gb|AY886639.1| Uncultured bacterium clone NF50-A8 16S ribosomal RNA gene, partial sequence Length = 377 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctttgccagcagccgcggg 472 |||||||||||||||||||| Sbjct: 349 cctttgccagcagccgcggg 330
>gb|AY886580.1| Uncultured bacterium clone NF17-H11 16S ribosomal RNA gene, partial sequence Length = 375 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctttgccagcagccgcggg 472 |||||||||||||||||||| Sbjct: 338 cctttgccagcagccgcggg 319
>gb|AC001234.1|AC001234 Homo sapiens Chromosome 11q23 PAC clone pDJ149k2 containing PLZF gene encoding kruppel-like zinc finger protein, complete sequence Length = 160748 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 gccacggccaagcctttgcc 460 |||||||||||||||||||| Sbjct: 138374 gccacggccaagcctttgcc 138355
>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence Length = 232605 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 cagggtctccgcccagagggagga 291 |||| ||||||||||||||||||| Sbjct: 17599 caggctctccgcccagagggagga 17622
>dbj|AP002755.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-635F12, complete sequences Length = 111328 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 gccacggccaagcctttgcc 460 |||||||||||||||||||| Sbjct: 13498 gccacggccaagcctttgcc 13517 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,174,265 Number of Sequences: 3902068 Number of extensions: 4174265 Number of successful extensions: 294752 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 292722 Number of HSP's gapped (non-prelim): 2030 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
