ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28a10 |
|---|---|
| Clone Library Name | barley_pub |
>ATG17_NEUCR (Q872W1) Autophagy-related protein 17| Length = 568 Score = 32.7 bits (73), Expect = 0.65 Identities = 30/93 (32%), Positives = 42/93 (45%) Frame = -3 Query: 504 SCTPPWSLSPLRASKPRRVLLTMRMQRKPLPTSLLSVHSTDASSYAGLNGTSFTGWDWPM 325 S +PP +LSP A +PRR T LS S G + + F D P+ Sbjct: 8 SPSPPAALSPDDAPQPRRPSRTSLHDAAAAAAPALSPESPGHELEDGADSSEFNADDVPV 67 Query: 324 ECLTARPVALLTSAKAGMPSSSLTVVLKRMSLS 226 E L V L +AK + SS+T+VL+ L+ Sbjct: 68 EVL----VKHLLAAKQSL--SSMTLVLRANDLA 94
>EXPA_DROME (Q07436) Protein expanded| Length = 1427 Score = 32.0 bits (71), Expect = 1.1 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Frame = -3 Query: 507 PSCTPPWSLSPLRASKP---RRVLLTMRMQRKPLPTSLLSVHST--DASSYAGLNGTSFT 343 P C+PP +P+ A P RR + KP PTSL+SV S+ A S AG + +S Sbjct: 821 PPCSPPVPPAPIPAPPPAIRRRDPPPYSISSKPRPTSLISVSSSAHPAPSAAG-SMSSLK 879 Query: 342 GWDWPMECLTARPVALLTSAKAGM 271 + +T RP + A + Sbjct: 880 SEEVTARFITTRPQISILKAHTSL 903
>REP1_ZYGRO (P13778) Trans-acting factor B (REP1)| Length = 410 Score = 30.8 bits (68), Expect = 2.5 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Frame = +2 Query: 83 HKDQAPAASGP-NQIFKIYCRASEDYCLAVRDGEVVLAPVNPKDETQHWLKDMRFSTTVK 259 HK AP S P ++ +I + ++ + E L PVN + Q + + + T V+ Sbjct: 114 HKLIAPDVSIPESRKDEILGQQKKERVVTKTINENFLDPVNARPRLQRFFEKLHNGTLVE 173 Query: 260 DEEGMPAFALVNKATGLAVKHSIGQSHPVKLVPFNPAYEDASVLWTESKDVGKGFRCIRM 439 + E L ++ K +GQS ++++ N LW VG+ C + Sbjct: 174 NLE----VGLCKVEILVSSKAMLGQSFKLQIMAAN-----VRELW-----VGE-MVCNMI 218 Query: 440 VNNTRLGFDALNGDKDHG 493 N T GFD GD D G Sbjct: 219 TNETDYGFDEGGGDDDEG 236
>GALT6_BOVIN (Q5EA41) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 30.8 bits (68), Expect = 2.5 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 158 CLAVRDGEVVLAPVNPKDETQHWL 229 CL +D + V+A NP D QHWL Sbjct: 597 CLTSKDKKPVMATCNPSDPHQHWL 620
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 30.8 bits (68), Expect = 2.5 Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 16/66 (24%) Frame = +1 Query: 229 QGHALQH---------HRQG------RRGHAGLRARQQGHRPRRQA-LHRPVPPREAGAV 360 +GHA +H HR G RGH RQQGH P HR E G Sbjct: 590 EGHAEEHQTEVPGHHQHRMGDTDTSAERGHPASSPRQQGHPPEDTVHHHRGSLKEEVGPE 649 Query: 361 QPGVRG 378 PG G Sbjct: 650 SPGPAG 655
>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1| (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1846 Score = 30.8 bits (68), Expect = 2.5 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +1 Query: 316 QALHRPVPPREAGAVQPGVRG-RVGAVDGEQGR 411 QA RPVPPRE G++ P + G RVG G +GR Sbjct: 1429 QASARPVPPRERGSL-PVIEGTRVGQEPGGRGR 1460
>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)| (11 kDa core protein) Length = 79 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +1 Query: 247 HHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDG 399 H R+G GH ++ H RR+A HR + + P + +GAV G Sbjct: 18 HRRRGMAGHGLTGGMRRAHHRRRRASHRRMRGGILPLLIPLIAAAIGAVPG 68
>MUC15_MOUSE (Q8C6Z1) Mucin-15 precursor| Length = 331 Score = 30.0 bits (66), Expect = 4.2 Identities = 22/93 (23%), Positives = 38/93 (40%) Frame = -3 Query: 531 HSQSTTVVPSCTPPWSLSPLRASKPRRVLLTMRMQRKPLPTSLLSVHSTDASSYAGLNGT 352 HS ST WSL + P + T+R P T+ ++ + + + + N Sbjct: 134 HSNSTNSPSPENFTWSLDNDTMNSPEDISTTVRPFPPPPKTTPVTPFTAEPTEWLPTNND 193 Query: 351 SFTGWDWPMECLTARPVALLTSAKAGMPSSSLT 253 +F G+ E T +P T+ P++S T Sbjct: 194 NFAGFTPYQEKTTLQPTLKFTNNSKLFPNTSDT 226
>CUTI2_ASPOR (Q2TZY7) Probable cutinase 2 precursor (EC 3.1.1.74) (Cutin| hydrolase 2) Length = 221 Score = 30.0 bits (66), Expect = 4.2 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Frame = +2 Query: 35 IRHALLAAKMFGFGHHHKDQAPAASGPNQIFKIYCRASEDYCLAVRDGEVVLAPV----- 199 ++ + +FG+ + ++ A+ P K+YC + C DG +++ P Sbjct: 143 VKEKIKGVVLFGYTRNAQEHGQIANFPKDKVKVYCAVGDMVC----DGTLIVGPAHFTYL 198 Query: 200 -NPKDETQHWLKDMRF 244 N + TQ L +RF Sbjct: 199 GNTGEATQFLLGYLRF 214
>CAC1C_MOUSE (Q01815) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Mouse brain class C) (MBC) (MELC-CC) Length = 2139 Score = 30.0 bits (66), Expect = 4.2 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%) Frame = -3 Query: 531 HSQSTTVVPSCTPPWSLSPLRASKPRRVLLTMRMQ----RKPLPTSLLSVH-STDASSYA 367 HS +T P TPP ++P +P R + T+R++ + L +S S+H S+ + Sbjct: 1942 HSPTTFPRPCPTPP--VTPGSRGRPLRPIPTLRLEGAESSEKLNSSFPSIHCSSWSEETT 1999 Query: 366 GLNGTSFTGWDWPMECLTARPVALLTSAKAGMP 268 +G+S ARPV+L ++AG P Sbjct: 2000 ACSGSSSMA-------RRARPVSLTVPSQAGAP 2025
>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 807 Score = 30.0 bits (66), Expect = 4.2 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = +1 Query: 43 RSPRRQDVRVRAPPQGPGAG 102 R PR + R+RA PQGPGAG Sbjct: 305 RPPRPRPRRLRAAPQGPGAG 324
>VMSA_HPBDC (P30029) Major surface antigen precursor| Length = 365 Score = 29.6 bits (65), Expect = 5.5 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 525 QSTTVVPSCTPPWSLSP 475 ++TT+ PS TPPW L P Sbjct: 146 ETTTIPPSSTPPWKLQP 162
>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (RAT brain class C) (RBC) Length = 2169 Score = 29.6 bits (65), Expect = 5.5 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%) Frame = -3 Query: 531 HSQSTTVVPSCTPPWSLSPLRASKPRRVLLTMRMQ----RKPLPTSLLSVHSTDAS--SY 370 HS ST P TPP ++P +P + + T+R++ + L +S S+H + S + Sbjct: 1972 HSPSTFPRPRPTPP--VTPGSRGRPLQPIPTLRLEGAESSEKLNSSFPSIHCSSWSEETT 2029 Query: 369 AGLNGTSFTGWDWPMECLTARPVALLTSAKAGMP 268 A G+S ARPV+L ++AG P Sbjct: 2030 ACSGGSSMAR--------RARPVSLTVPSQAGAP 2055
>KRUH_DROME (P08155) Krueppel homologous protein 1| Length = 845 Score = 29.3 bits (64), Expect = 7.2 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%) Frame = -3 Query: 531 HSQSTTVVPSCTPPWSLSPLRASKPR---RVLLTMRMQRK-PL-PTSLLSVHSTDASSYA 367 +S+S+ P +PP + P +A +PR V T+ + PL P+SL S +S ASS A Sbjct: 500 NSESSNHSPPSSPPATKKPRQARQPRVSKTVAATLSIPTSSPLSPSSLSSTYSPSASSMA 559 Query: 366 GLNGTS 349 TS Sbjct: 560 SPPPTS 565
>PLSX_DEIRA (Q46578) Fatty acid/phospholipid synthesis protein plsX| Length = 360 Score = 29.3 bits (64), Expect = 7.2 Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 4/53 (7%) Frame = +1 Query: 241 LQHHRQGRRGHAGLRARQQGHRPRRQ---ALHRPVPPREAG-AVQPGVRGRVG 387 L+ R AGL +Q RPRRQ A RP P AG A GVRG G Sbjct: 298 LRREHLDRGAGAGLYRPRQRRRPRRQKRRAACRPRPRSAAGRAPGSGVRGAAG 350 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,017,179 Number of Sequences: 219361 Number of extensions: 1069317 Number of successful extensions: 4663 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4473 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4660 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
