Clone Information

BLAST Search Result

Clone Name	bart28a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK099894.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	297	2e-77
2	dbj\|AK066034.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	289	4e-75
3	ref\|NM_192167.1\| Oryza sativa (japonica cultivar-group), predic...	206	5e-50
4	ref\|XM_475848.1\| Oryza sativa (japonica cultivar-group), predic...	145	2e-31
5	dbj\|AK061016.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	125	1e-25
6	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	109	8e-21
7	dbj\|AP003248.4\| Oryza sativa (japonica cultivar-group) genomic D...	109	8e-21
8	gb\|AC130725.2\| Oryza sativa (japonica cultivar-group) chromosome...	60	7e-06
9	gb\|AC136492.3\| Oryza sativa (japonica cultivar-group) chromosome...	60	7e-06
10	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	7e-06
11	gb\|AC037459.16\| Homo sapiens chromosome 8, clone RP11-582J16, co...	46	0.10
12	dbj\|AK109215.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.41
13	ref\|XM_517517.1\| PREDICTED: Pan troglodytes similar to Hypotheti...	42	1.6
14	gb\|AC163447.5\| Mus musculus chromosome 7, clone RP24-314E16, com...	42	1.6
15	gb\|AC166334.8\| Mus musculus chromosome 7, clone RP23-470P9, comp...	42	1.6
16	ref\|NM_020971.1\| Homo sapiens spectrin, beta, non-erythrocytic 4...	42	1.6
17	ref\|NM_025213.1\| Homo sapiens spectrin, beta, non-erythrocytic 4...	42	1.6
18	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	42	1.6
19	gb\|AF324063.1\| Homo sapiens non-erythrocytic beta-spectrin 4 (SP...	42	1.6
20	gb\|AC020929.6\| Homo sapiens chromosome 19 clone CTD-2223D2, comp...	42	1.6
21	emb\|CR613374.1\| full-length cDNA clone CS0DN001YL18 of Adult bra...	42	1.6
22	dbj\|AK054915.1\| Homo sapiens cDNA FLJ30353 fis, clone BRACE2007663	42	1.6
23	gb\|AC083841.9\| Homo sapiens chromosome 8, clone RP11-706C16, com...	42	1.6
24	gb\|AF082075.1\|AF082075 Homo sapiens beta4sigma1 spectrin mRNA, c...	42	1.6
25	gb\|AC073385.14\| Homo sapiens chromosome 8, clone RP11-304E16, co...	42	1.6
26	gb\|AC134542.3\| Mus musculus BAC clone RP24-441E15 from 6, comple...	42	1.6
27	ref\|NM_101701.2\| Arabidopsis thaliana aminoacyl-tRNA hydrolase A...	40	6.5
28	ref\|NM_190532.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.5
29	gb\|AC165307.6\| Mus musculus chromosome 3, clone RP24-372I24, com...	40	6.5
30	gb\|AC098705.2\| Mus musculus BAC clone RP23-1B19 from 3, complete...	40	6.5
31	gb\|AY043329.1\| Streptomyces lividans ethidium bromide resistance...	40	6.5
32	emb\|CR450812.5\| Zebrafish DNA sequence from clone CH211-161H7, c...	40	6.5
33	ref\|XM_795315.1\| PREDICTED: Strongylocentrotus purpuratus hypoth...	40	6.5
34	ref\|XM_794779.1\| PREDICTED: Strongylocentrotus purpuratus hypoth...	40	6.5
35	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	40	6.5
36	emb\|AL939110.1\|SCO939110 Streptomyces coelicolor A3(2) complete ...	40	6.5
37	gb\|AC182768.3\| Pan troglodytes BAC clone CH251-178I17 from chrom...	40	6.5
38	gb\|AE011678.1\| Xanthomonas axonopodis pv. citri str. 306, secti...	40	6.5
39	emb\|BX813553.1\|CNS0AAJW Arabidopsis thaliana Full-length cDNA Co...	40	6.5
40	gb\|AC145375.5\| Pan troglodytes BAC clone RP43-57M5 from chromoso...	40	6.5
41	gb\|BT005284.1\| Arabidopsis thaliana At1g18440 mRNA, complete cds	40	6.5
42	dbj\|AP003241.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
43	emb\|BX005396.5\| Zebrafish DNA sequence from clone CH211-128N12, ...	40	6.5
44	dbj\|AK119054.1\| Arabidopsis thaliana At1g18440 mRNA for unknown ...	40	6.5
45	gb\|AC134829.3\| Mus musculus BAC clone RP24-491N21 from 6, comple...	40	6.5
46	gb\|AC132613.4\| Mus musculus BAC clone RP23-285C21 from 6, comple...	40	6.5
47	gb\|AY450930.1\| Chlamydomonas reinhardtii plus agglutinin (SAG1) ...	40	6.5
48	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	6.5
49	emb\|CT027660.1\| Medicago truncatula chromosome 5 clone mth4-7a11...	40	6.5
50	gb\|AC151475.1\| Mus musculus BAC clone RP23-283P1 from 5, complet...	40	6.5
51	emb\|AL928737.8\| Mouse DNA sequence from clone RP23-382O14 on chr...	40	6.5

>dbj|AK099894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113G18, full
           insert sequence
          Length = 1249

 Score =  297 bits (150), Expect = 2e-77
 Identities = 240/266 (90%), Gaps = 3/266 (1%)
 Strand = Plus / Plus

                                                                       
Query: 216 gacggcggcgcgcggaagccgtggctgttcgttgggctagggaaccccgggaagatgtac 275
           ||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||  |||||
Sbjct: 198 gacggcggcgcgctgaagccgtggttgttcgtcgggctcgggaaccccgggaaagtgtac 257

                                                                       
Query: 276 cagaggactcgccacaacgttggattcgagatgattgatgctatagcagaagcagagggt 335
           ||  |||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 258 caagggactcgccacaacgttggattcgagatgattgatgttatagcagaagctgaaggt 317

                                                                       
Query: 336 gtatcactcagcggtatgcagttcaaggcaatggttggcaaaggtcgtattggagatgtt 395
            |||| |||||| |||||||||||||||||||||| || |||||||||||||||||||  
Sbjct: 318 atatccctcagcagtatgcagttcaaggcaatggtaggaaaaggtcgtattggagatgcc 377

                                                                       
Query: 396 cctatcatgcttgccaagccgcaaacgtttatgaatgcaagcggtgagtctgttggggca 455
           ||||||||||| |||||||| ||||| |||||||||||||| |||||||||| |||||||
Sbjct: 378 cctatcatgctggccaagccacaaacttttatgaatgcaagtggtgagtctg-tggggca 436

                                     
Query: 456 gctggt-tcatatttc-agataccac 479
           | |||| ||||||||| |||||||||
Sbjct: 437 gttggtctcatatttcaagataccac 462

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>dbj|AK066034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047M19, full
           insert sequence
          Length = 1211

 Score =  289 bits (146), Expect = 4e-75
 Identities = 239/266 (89%), Gaps = 3/266 (1%)
 Strand = Plus / Plus

                                                                       
Query: 216 gacggcggcgcgcggaagccgtggctgttcgttgggctagggaaccccgggaagatgtac 275
           ||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||  |||||
Sbjct: 222 gacggcggcgcgctgaagccgtggttgttcgtcgggctcgggaaccccgggaaagtgtac 281

                                                                       
Query: 276 cagaggactcgccacaacgttggattcgagatgattgatgctatagcagaagcagagggt 335
           ||  |||||| ||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 282 caagggactctccacaacgttggattcgagatgattgatgttatagcagaagctgaaggt 341

                                                                       
Query: 336 gtatcactcagcggtatgcagttcaaggcaatggttggcaaaggtcgtattggagatgtt 395
            |||| |||||| |||||||||||||||||||||| || |||||||||||||||||||  
Sbjct: 342 atatccctcagcagtatgcagttcaaggcaatggtaggaaaaggtcgtattggagatgcc 401

                                                                       
Query: 396 cctatcatgcttgccaagccgcaaacgtttatgaatgcaagcggtgagtctgttggggca 455
           ||||||||||| |||||||| ||||| |||||||||||||| |||||||||| |||||||
Sbjct: 402 cctatcatgctggccaagccacaaacttttatgaatgcaagtggtgagtctg-tggggca 460

                                     
Query: 456 gctggt-tcatatttc-agataccac 479
           | |||| ||||||||| |||||||||
Sbjct: 461 gttggtctcatatttcaagataccac 486

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>ref|NM_192167.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 801

 Score =  206 bits (104), Expect = 5e-50
 Identities = 170/188 (90%), Gaps = 3/188 (1%)
 Strand = Plus / Plus

                                                                       
Query: 294 gttggattcgagatgattgatgctatagcagaagcagagggtgtatcactcagcggtatg 353
           |||||||||||||||||||||| |||||||||||| || ||| |||| |||||| |||||
Sbjct: 271 gttggattcgagatgattgatgttatagcagaagctgaaggtatatccctcagcagtatg 330

                                                                       
Query: 354 cagttcaaggcaatggttggcaaaggtcgtattggagatgttcctatcatgcttgccaag 413
           ||||||||||||||||| || |||||||||||||||||||  ||||||||||| ||||||
Sbjct: 331 cagttcaaggcaatggtaggaaaaggtcgtattggagatgcccctatcatgctggccaag 390

                                                                       
Query: 414 ccgcaaacgtttatgaatgcaagcggtgagtctgttggggcagctggt-tcatatttc-a 471
           || ||||| |||||||||||||| |||||||||| |||||||| |||| ||||||||| |
Sbjct: 391 ccacaaacttttatgaatgcaagtggtgagtctg-tggggcagttggtctcatatttcaa 449

                   
Query: 472 gataccac 479
           ||||||||
Sbjct: 450 gataccac 457



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                       
Query: 216 gacggcggcgcgcggaagccgtggctgttcgttgggctagggaaccccgggaagatgtac 275
           ||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||  |||||
Sbjct: 145 gacggcggcgcgctgaagccgtggttgttcgtcgggctcgggaaccccgggaaagtgtac 204

                             
Query: 276 cagaggactcgccacaac 293
           ||  ||||||||||||||
Sbjct: 205 caagggactcgccacaac 222

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>ref|XM_475848.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 708

 Score =  145 bits (73), Expect = 2e-31
 Identities = 184/221 (83%)
 Strand = Plus / Plus

                                                                       
Query: 230 gaagccgtggctgttcgttgggctagggaaccccgggaagatgtaccagaggactcgcca 289
           ||||||||||||| || | ||||| ||||||||||| | ||||||| || ||||||| ||
Sbjct: 114 gaagccgtggctgctcatcgggctcgggaaccccggcaggatgtacaaggggactcgtca 173

                                                                       
Query: 290 caacgttggattcgagatgattgatgctatagcagaagcagagggtgtatcactcagcgg 349
           |||||||||||| |||||||| |||||||| |||||||| |||||| | ||  | ||| |
Sbjct: 174 caacgttggatttgagatgatcgatgctattgcagaagctgagggtatttctgttagcag 233

                                                                       
Query: 350 tatgcagttcaaggcaatggttggcaaaggtcgtattggagatgttcctatcatgcttgc 409
            | ||| |||||| |||||||||| ||||| | |||||| ||||| ||  | ||||||||
Sbjct: 234 caagcaattcaagtcaatggttggtaaaggccttattggtgatgtcccagtaatgcttgc 293

                                                    
Query: 410 caagccgcaaacgtttatgaatgcaagcggtgagtctgttg 450
           |||||| || || |  ||||||||||| |||||||||||||
Sbjct: 294 caagccacagacttacatgaatgcaagtggtgagtctgttg 334

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>dbj|AK061016.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B10, full
           insert sequence
          Length = 1074

 Score =  125 bits (63), Expect = 1e-25
 Identities = 171/207 (82%)
 Strand = Plus / Plus

                                                                       
Query: 230 gaagccgtggctgttcgttgggctagggaaccccgggaagatgtaccagaggactcgcca 289
           ||||||||||||| || | ||||| ||||||||||| | ||||||| || ||||||| ||
Sbjct: 210 gaagccgtggctgctcatcgggctcgggaaccccggcaggatgtacaaggggactcgtca 269

                                                                       
Query: 290 caacgttggattcgagatgattgatgctatagcagaagcagagggtgtatcactcagcgg 349
           |||||||||||| |||||||| |||||||| |||||||| |||||| | ||  | ||| |
Sbjct: 270 caacgttggatttgagatgatcgatgctattgcagaagctgagggtatttctgttagcag 329

                                                                       
Query: 350 tatgcagttcaaggcaatggttggcaaaggtcgtattggagatgttcctatcatgcttgc 409
            | ||| |||||| |||||||||| ||||| | |||||| ||||| ||  | ||||||||
Sbjct: 330 caagcaattcaagtcaatggttggtaaaggccttattggtgatgtcccagtaatgcttgc 389

                                      
Query: 410 caagccgcaaacgtttatgaatgcaag 436
           |||||| || || |  |||||||||||
Sbjct: 390 caagccacagacttacatgaatgcaag 416

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                            
Query: 294      gttggattcgagatgattgatgctatagcagaagcagagggtgtatcactcagcggtatg 353
                |||||||||||||||||||||| |||||||||||| || ||| |||| |||||| |||||
Sbjct: 28652972 gttggattcgagatgattgatgttatagcagaagctgaaggtatatccctcagcagtatg 28652913

                                           
Query: 354      cagttcaaggcaatggttggcaaaggt 380
                ||||||||||||||||| || ||||||
Sbjct: 28652912 cagttcaaggcaatggtaggaaaaggt 28652886



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                            
Query: 216      gacggcggcgcgcggaagccgtggctgttcgttgggctagggaaccccgggaagatgtac 275
                ||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||  |||||
Sbjct: 28653536 gacggcggcgcgctgaagccgtggttgttcgtcgggctcgggaaccccgggaaagtgtac 28653477

                                    
Query: 276      cagaggactcgccacaacgt 295
                ||  ||||||||||||||||
Sbjct: 28653476 caagggactcgccacaacgt 28653457



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                            
Query: 377      aggtcgtattggagatgttcctatcatgcttgccaagccgcaaacgtttatgaatgcaag 436
                |||||||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 28652607 aggtcgtattggagatgcccctatcatgctggccaagccacaaacttttatgaatgcaag 28652548

                            
Query: 437      cggtgagtctgt 448
                 |||||||||||
Sbjct: 28652547 tggtgagtctgt 28652536



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 56       gccggcgacagcggcggcga 75
                ||||||||||||||||||||
Sbjct: 36052729 gccggcgacagcggcggcga 36052748

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>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431H09
          Length = 166886

 Score =  109 bits (55), Expect = 8e-21
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                         
Query: 294   gttggattcgagatgattgatgctatagcagaagcagagggtgtatcactcagcggtatg 353
             |||||||||||||||||||||| |||||||||||| || ||| |||| |||||| |||||
Sbjct: 36046 gttggattcgagatgattgatgttatagcagaagctgaaggtatatccctcagcagtatg 35987

                                        
Query: 354   cagttcaaggcaatggttggcaaaggt 380
             ||||||||||||||||| || ||||||
Sbjct: 35986 cagttcaaggcaatggtaggaaaaggt 35960



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                         
Query: 216   gacggcggcgcgcggaagccgtggctgttcgttgggctagggaaccccgggaagatgtac 275
             ||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||  |||||
Sbjct: 36610 gacggcggcgcgctgaagccgtggttgttcgtcgggctcgggaaccccgggaaagtgtac 36551

                                 
Query: 276   cagaggactcgccacaacgt 295
             ||  ||||||||||||||||
Sbjct: 36550 caagggactcgccacaacgt 36531



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                         
Query: 377   aggtcgtattggagatgttcctatcatgcttgccaagccgcaaacgtttatgaatgcaag 436
             |||||||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 35681 aggtcgtattggagatgcccctatcatgctggccaagccacaaacttttatgaatgcaag 35622

                         
Query: 437   cggtgagtctgt 448
              |||||||||||
Sbjct: 35621 tggtgagtctgt 35610

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>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 230   gaagccgtggctgttcgttgggctagggaaccccgggaagatgtaccagaggactcgcca 289
             ||||||||||||| || | ||||| ||||||||||| | ||||||| || ||||||| ||
Sbjct: 73551 gaagccgtggctgctcatcgggctcgggaaccccggcaggatgtacaaggggactcgtca 73610

                   
Query: 290   caacgt 295
             ||||||
Sbjct: 73611 caacgt 73616



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 402   atgcttgccaagccgcaaacgtttatgaatgcaagcggtgagtctgt 448
             |||||||||||||| || || |  ||||||||||| |||||||||||
Sbjct: 74582 atgcttgccaagccacagacttacatgaatgcaagtggtgagtctgt 74628

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>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
             complete sequence
          Length = 166218

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 230   gaagccgtggctgttcgttgggctagggaaccccgggaagatgtaccagaggactcgcca 289
             ||||||||||||| || | ||||| ||||||||||| | ||||||| || ||||||| ||
Sbjct: 98053 gaagccgtggctgctcatcgggctcgggaaccccggcaggatgtacaaggggactcgtca 98112

                   
Query: 290   caacgt 295
             ||||||
Sbjct: 98113 caacgt 98118



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 402   atgcttgccaagccgcaaacgtttatgaatgcaagcggtgagtctgt 448
             |||||||||||||| || || |  ||||||||||| |||||||||||
Sbjct: 99084 atgcttgccaagccacagacttacatgaatgcaagtggtgagtctgt 99130

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                            
Query: 230      gaagccgtggctgttcgttgggctagggaaccccgggaagatgtaccagaggactcgcca 289
                ||||||||||||| || | ||||| ||||||||||| | ||||||| || ||||||| ||
Sbjct: 27066969 gaagccgtggctgctcatcgggctcgggaaccccggcaggatgtacaaggggactcgtca 27067028

                      
Query: 290      caacgt 295
                ||||||
Sbjct: 27067029 caacgt 27067034



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 402      atgcttgccaagccgcaaacgtttatgaatgcaagcggtgagtctgt 448
                |||||||||||||| || || |  ||||||||||| |||||||||||
Sbjct: 27068000 atgcttgccaagccacagacttacatgaatgcaagtggtgagtctgt 27068046

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>gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, complete sequence
          Length = 174888

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 100    cctcccgcttcccctcgcccctcccct 126
              |||||| ||||||||||||||||||||
Sbjct: 120194 cctcccccttcccctcgcccctcccct 120220

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>dbj|AK109215.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-D09, full
           insert sequence
          Length = 656

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 49  tggtggtgccggcgacagcggcggcg 74
           |||||||| |||||||||||||||||
Sbjct: 296 tggtggtggcggcgacagcggcggcg 271

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>ref|XM_517517.1| PREDICTED: Pan troglodytes similar to Hypothetical protein FLJ11184
           (LOC461584), mRNA
          Length = 967

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 237 tggctgttcgttgggctaggg 257
           |||||||||||||||||||||
Sbjct: 4   tggctgttcgttgggctaggg 24

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>gb|AC163447.5| Mus musculus chromosome 7, clone RP24-314E16, complete sequence
          Length = 135851

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     ctggtgcccaattggtggtgc 57
              |||||||||||||||||||||
Sbjct: 128196 ctggtgcccaattggtggtgc 128216

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>gb|AC166334.8| Mus musculus chromosome 7, clone RP23-470P9, complete sequence
          Length = 171861

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    ctggtgcccaattggtggtgc 57
             |||||||||||||||||||||
Sbjct: 45734 ctggtgcccaattggtggtgc 45754

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>ref|NM_020971.1| Homo sapiens spectrin, beta, non-erythrocytic 4 (SPTBN4), transcript
            variant 1, mRNA
          Length = 8671

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  gcttcccctcgcccctcccct 126
            |||||||||||||||||||||
Sbjct: 8509 gcttcccctcgcccctcccct 8489

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>ref|NM_025213.1| Homo sapiens spectrin, beta, non-erythrocytic 4 (SPTBN4), transcript
            variant 2, mRNA
          Length = 8788

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  gcttcccctcgcccctcccct 126
            |||||||||||||||||||||
Sbjct: 8586 gcttcccctcgcccctcccct 8566

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 53     ggtgccggcgacagcggcggcgatg 77
              |||| ||||||||||||||||||||
Sbjct: 621721 ggtggcggcgacagcggcggcgatg 621745

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>gb|AF324063.1| Homo sapiens non-erythrocytic beta-spectrin 4 (SPNB4) mRNA, complete
            cds
          Length = 8671

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  gcttcccctcgcccctcccct 126
            |||||||||||||||||||||
Sbjct: 8509 gcttcccctcgcccctcccct 8489

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>gb|AC020929.6| Homo sapiens chromosome 19 clone CTD-2223D2, complete sequence
          Length = 119569

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    gcttcccctcgcccctcccct 126
              |||||||||||||||||||||
Sbjct: 112771 gcttcccctcgcccctcccct 112751

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>emb|CR613374.1| full-length cDNA clone CS0DN001YL18 of Adult brain of Homo sapiens
           (human)
          Length = 990

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 gcttcccctcgcccctcccct 126
           |||||||||||||||||||||
Sbjct: 830 gcttcccctcgcccctcccct 810

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>dbj|AK054915.1| Homo sapiens cDNA FLJ30353 fis, clone BRACE2007663
          Length = 1884

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  gcttcccctcgcccctcccct 126
            |||||||||||||||||||||
Sbjct: 1724 gcttcccctcgcccctcccct 1704

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>gb|AC083841.9| Homo sapiens chromosome 8, clone RP11-706C16, complete sequence
          Length = 203375

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   ggcagcctcctcgtcagctgc 205
             |||||||||||||||||||||
Sbjct: 52897 ggcagcctcctcgtcagctgc 52877

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>gb|AF082075.1|AF082075 Homo sapiens beta4sigma1 spectrin mRNA, complete cds
          Length = 8788

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  gcttcccctcgcccctcccct 126
            |||||||||||||||||||||
Sbjct: 8586 gcttcccctcgcccctcccct 8566

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>gb|AC073385.14| Homo sapiens chromosome 8, clone RP11-304E16, complete sequence
          Length = 125535

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 185   ggcagcctcctcgtcagctgc 205
             |||||||||||||||||||||
Sbjct: 32640 ggcagcctcctcgtcagctgc 32660

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>gb|AC134542.3| Mus musculus BAC clone RP24-441E15 from 6, complete sequence
          Length = 175750

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   gattgatgctatagcagaagc 328
             |||||||||||||||||||||
Sbjct: 89744 gattgatgctatagcagaagc 89764

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>ref|NM_101701.2| Arabidopsis thaliana aminoacyl-tRNA hydrolase AT1G18440 mRNA,
           complete cds
          Length = 1109

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 261 cccgggaagatgtaccagaggactcgccacaacgttggattcgagatg 308
           ||||| |||| ||||||| | || |||||||||||||| || ||||||
Sbjct: 325 cccggcaagaagtaccagggcacgcgccacaacgttggttttgagatg 372

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>ref|NM_190532.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 56 gccggcgacagcggcggcga 75
          ||||||||||||||||||||
Sbjct: 98 gccggcgacagcggcggcga 79

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>gb|AC165307.6| Mus musculus chromosome 3, clone RP24-372I24, complete sequence
          Length = 136853

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    attgatgctatagcagaagc 328
              ||||||||||||||||||||
Sbjct: 127206 attgatgctatagcagaagc 127187

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>gb|AC098705.2| Mus musculus BAC clone RP23-1B19 from 3, complete sequence
          Length = 202444

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   attgatgctatagcagaagc 328
             ||||||||||||||||||||
Sbjct: 63925 attgatgctatagcagaagc 63906

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>gb|AY043329.1| Streptomyces lividans ethidium bromide resistance operon, commplete
           sequence
          Length = 1792

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 50  ggtggtgccggcgacagcggcggcgatg 77
           |||||||||||||||  |||||||||||
Sbjct: 437 ggtggtgccggcgacctcggcggcgatg 410

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>emb|CR450812.5| Zebrafish DNA sequence from clone CH211-161H7, complete sequence
          Length = 154456

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   gattcgagatgattgatgct 317
             ||||||||||||||||||||
Sbjct: 30578 gattcgagatgattgatgct 30559

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>ref|XM_795315.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC586764 (LOC586764), mRNA
          Length = 2151

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ccatccaaattactactggt 41
            ||||||||||||||||||||
Sbjct: 1453 ccatccaaattactactggt 1472

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>ref|XM_794779.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC576027 (LOC576027), mRNA
          Length = 2690

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ccatccaaattactactggt 41
            ||||||||||||||||||||
Sbjct: 1543 ccatccaaattactactggt 1562

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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 400     tcatgcttgccaagccgcaa 419
               ||||||||||||||||||||
Sbjct: 3093076 tcatgcttgccaagccgcaa 3093095

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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 50     ggtggtgccggcgacagcggcggcgatg 77
              |||||||||||||||  |||||||||||
Sbjct: 233433 ggtggtgccggcgacctcggcggcgatg 233460

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>gb|AC182768.3| Pan troglodytes BAC clone CH251-178I17 from chromosome 7, complete
             sequence
          Length = 186886

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   cccgcttcccctcgcccctc 122
             ||||||||||||||||||||
Sbjct: 63536 cccgcttcccctcgcccctc 63517

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>gb|AE011678.1| Xanthomonas axonopodis pv. citri str. 306,  section 56 of 469 of the
            complete genome
          Length = 12249

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   cggcgacagcggcggcgatg 77
            ||||||||||||||||||||
Sbjct: 9803 cggcgacagcggcggcgatg 9822

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>emb|BX813553.1|CNS0AAJW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB24ZA09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1387

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 261 cccgggaagatgtaccagaggactcgccacaacgttggattcgagatg 308
           ||||| |||| ||||||| | || |||||||||||||| || ||||||
Sbjct: 357 cccggcaagaagtaccagggcacgcgccacaacgttggttttgagatg 404

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>gb|AC145375.5| Pan troglodytes BAC clone RP43-57M5 from chromosome 7, complete
             sequence
          Length = 217260

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   cccgcttcccctcgcccctc 122
             ||||||||||||||||||||
Sbjct: 59318 cccgcttcccctcgcccctc 59337

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>gb|BT005284.1| Arabidopsis thaliana At1g18440 mRNA, complete cds
          Length = 867

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 261 cccgggaagatgtaccagaggactcgccacaacgttggattcgagatg 308
           ||||| |||| ||||||| | || |||||||||||||| || ||||||
Sbjct: 307 cccggcaagaagtaccagggcacgcgccacaacgttggttttgagatg 354

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>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408C03
          Length = 141273

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    gccggcgacagcggcggcga 75
             ||||||||||||||||||||
Sbjct: 65454 gccggcgacagcggcggcga 65473

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>emb|BX005396.5| Zebrafish DNA sequence from clone CH211-128N12, complete sequence
          Length = 177531

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    ctgttggggcagctggttca 464
              ||||||||||||||||||||
Sbjct: 154529 ctgttggggcagctggttca 154510

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>dbj|AK119054.1| Arabidopsis thaliana At1g18440 mRNA for unknown protein, complete
           cds, clone: RAFL21-39-I07
          Length = 1109

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 261 cccgggaagatgtaccagaggactcgccacaacgttggattcgagatg 308
           ||||| |||| ||||||| | || |||||||||||||| || ||||||
Sbjct: 325 cccggcaagaagtaccagggcacgcgccacaacgttggttttgagatg 372

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>gb|AC134829.3| Mus musculus BAC clone RP24-491N21 from 6, complete sequence
          Length = 173494

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    attgatgctatagcagaagc 328
              ||||||||||||||||||||
Sbjct: 163394 attgatgctatagcagaagc 163413

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>gb|AC132613.4| Mus musculus BAC clone RP23-285C21 from 6, complete sequence
          Length = 221317

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    attgatgctatagcagaagc 328
              ||||||||||||||||||||
Sbjct: 201734 attgatgctatagcagaagc 201715

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>gb|AY450930.1| Chlamydomonas reinhardtii plus agglutinin (SAG1) gene, complete cds;
             and unknown gene
          Length = 18555

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cggcgacagcggcggcgatg 77
             ||||||||||||||||||||
Sbjct: 13462 cggcgacagcggcggcgatg 13443

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 217     acggcggcgcgcggaagccg 236
               ||||||||||||||||||||
Sbjct: 4205817 acggcggcgcgcggaagccg 4205798

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>emb|CT027660.1| Medicago truncatula chromosome 5 clone mth4-7a11, COMPLETE SEQUENCE
          Length = 107624

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    cgcctcggcctcccgcttcccctc 115
             |||||||||||||| |||||||||
Sbjct: 30736 cgcctcggcctcccccttcccctc 30713

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>gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complete sequence
          Length = 171663

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 100   cctcccgcttcccctcgcccctcccctt 127
             |||||| ||||||||| |||||||||||
Sbjct: 50417 cctcccccttcccctctcccctcccctt 50390

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>emb|AL928737.8| Mouse DNA sequence from clone RP23-382O14 on chromosome 2, complete
              sequence
          Length = 237175

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 100    cctcccgcttcccctcgcccctcccctt 127
              |||||| ||||||||| |||||||||||
Sbjct: 196105 cctcccccttcccctcccccctcccctt 196078


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,685,144
Number of Sequences: 3902068
Number of extensions: 3685144
Number of successful extensions: 179044
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 178502
Number of HSP's gapped (non-prelim): 540
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result