ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart28a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p... 32 1.6
2POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p... 31 2.1
3POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p... 30 4.7
4POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p... 30 6.1
5POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p... 30 6.1
6SMI1_ASHGO (Q75AQ9) KNR4/SMI1 homolog 29 8.0
7POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p... 29 8.0 
>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 315  PGAEALDPSNLETASARLTGDDLHASPSRLASDRRAASVRGRPLDSRK 172
            PG  +LDP         L   +    P+R   DRR A +  RPL S K
Sbjct: 1118 PGTRSLDPCTCGAVDLYLVTRNADVIPARRQGDRRGALLSPRPLSSLK 1165
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>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3017

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 315  PGAEALDPSNLETASARLTGDDLHASPSRLASDRRAASVRGRPLDSRK 172
            PGA +L P N  ++   L   +    P+R   D RAA +  RP+ + K
Sbjct: 1118 PGARSLTPCNCGSSDLYLVTREADVIPARRRGDSRAALLSPRPISTLK 1165
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>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3036

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 315  PGAEALDPSNLETASARLTGDDLHASPSRLASDRRAASVRGRPLDSRK 172
            PG  +L+P         L   +    P+R   DRR A +  RPL S K
Sbjct: 1118 PGTRSLEPCTCGAVDLYLVTRNADVIPARRRGDRRGALLSPRPLSSLK 1165
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>POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 315  PGAEALDPSNLETASARLTGDDLHASPSRLASDRRAASVRGRPLDSRK 172
            PG ++LDP         L   +    P R   DRR A +  RPL + K
Sbjct: 1118 PGTKSLDPCTCGAVDLYLVTRNADVIPVRRKDDRRGALLSPRPLSTLK 1165
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>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 315  PGAEALDPSNLETASARLTGDDLHASPSRLASDRRAASVRGRPLDSRK 172
            PG ++LDP         L   +    P R   DRR A +  RPL + K
Sbjct: 1118 PGTKSLDPCTCGAVDLYLVTRNADVIPVRRKDDRRGALLSPRPLSTLK 1165
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>SMI1_ASHGO (Q75AQ9) KNR4/SMI1 homolog|
          Length = 657

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 194 PLTLAALRSEASLEGDAWRSSPVSLADAVSKLLGSSASAPGANITASDEQVKADDAVAEE 373
           PLT A++ S ++      R +P   A    K  G S   PGA+   S   +   D + EE
Sbjct: 354 PLTSASVASFSTSSSVVNRPTPADAAGQARKTQGYSPMVPGASSNESVSFIPDSDVIMEE 413
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>POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3018

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 315  PGAEALDPSNLETASARLTGDDLHASPSRLASDRRAASVRGRPLDSRK 172
            PGA +L P    ++   L   +    P+R   D RAA +  RP+ + K
Sbjct: 1119 PGARSLTPCTCGSSDLYLVTREADVIPARRRGDNRAALLSPRPISTLK 1166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,417,477
Number of Sequences: 219361
Number of extensions: 293769
Number of successful extensions: 1537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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