Clone Information

BLAST Search Result

Clone Name	bart28a02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL18_ARATH (P42791) 60S ribosomal protein L18	236	2e-62
2	RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)	214	1e-55
3	RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)	179	3e-45
4	RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)	171	8e-43
5	RL18_ICTPU (Q90YV0) 60S ribosomal protein L18	168	7e-42
6	RL18_RAT (P12001) 60S ribosomal protein L18	168	9e-42
7	RL18_MOUSE (P35980) 60S ribosomal protein L18	167	1e-41
8	RL18_HUMAN (Q07020) 60S ribosomal protein L18	167	1e-41
9	RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)	166	3e-41
10	RL18_ORENI (P69091) 60S ribosomal protein L18	165	6e-41
11	RL18_OREMO (P69090) 60S ribosomal protein L18	165	6e-41
12	RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B	165	6e-41
13	RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A	165	6e-41
14	RL18_TRYBB (P50885) 60S ribosomal protein L18	146	3e-35
15	RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)	117	2e-26
16	RL18_SALSA (P24558) 60S ribosomal protein L18	105	9e-23
17	RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e	49	8e-06
18	RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e	46	5e-05
19	RL18E_PYRHO (O59302) 50S ribosomal protein L18e	46	5e-05
20	RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e	46	5e-05
21	RL18E_METTH (O26145) 50S ribosomal protein L18e	45	8e-05
22	RL18E_METJA (P54022) 50S ribosomal protein L18e	42	0.001
23	RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e	40	0.005
24	RL18E_ARCFU (O29138) 50S ribosomal protein L18e	37	0.039
25	RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e	37	0.039
26	RL18E_METMA (Q8PW46) 50S ribosomal protein L18e	33	0.33
27	RL18E_METAC (Q8TT44) 50S ribosomal protein L18e	33	0.33
28	RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e	33	0.44
29	PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependen...	32	1.3
30	FBSH_HUMAN (Q9HAH7) Probable fibrosin-1 long transcript protein	30	3.7
31	VG54_ICHV1 (Q00158) Hypothetical gene 54 protein	30	3.7
32	KLCB2_ECOLI (P52605) Protein klcB	30	4.8
33	CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2	30	4.8
34	BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Ce...	29	6.3
35	FADI_ERWCT (Q6D2L6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty...	29	6.3
36	ARS_STRPU (P50473) Arylsulfatase precursor (EC 3.1.6.1) (AS) (Ar...	29	6.3
37	FADI_PHOLL (Q7N287) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty...	29	8.2
38	COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor	29	8.2
39	SODE_HUMAN (P08294) Extracellular superoxide dismutase [Cu-Zn] p...	29	8.2
40	DIHR_ACHDO (Q16983) Diuretic hormone receptor precursor (DH-R)	29	8.2
41	ANDR_CANFA (Q9TT90) Androgen receptor (Dihydrotestosterone recep...	29	8.2

>RL18_ARATH (P42791) 60S ribosomal protein L18|
          Length = 187

 Score =  236 bits (603), Expect = 2e-62
 Identities = 119/144 (82%), Positives = 130/144 (90%)
 Frame = +3

Query: 72  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 251
           MGIDL+AGG++K+TKRTAPKSDDVYLKL VKLYRFLVRRT S+FN VILKRLFMSK N+ 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 252 PLSMRRLVRFMDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECL 431
           PLS+ RLV FM GK DKIAV+VGTITDD RV+EIPAMKV ALRFTE ARARI  AGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 432 TFDQLALRAPLGQNTLLLRGPKNA 503
           TFDQLALRAPLGQNT+LLRGPKN+
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNS 144

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>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)|
          Length = 183

 Score =  214 bits (544), Expect = 1e-55
 Identities = 106/141 (75%), Positives = 123/141 (87%)
 Frame = +3

Query: 81  DLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLS 260
           DL AGG+NK+TKRT+PKS+D+YLKLLVKLYRFLVRRT S FNAVILKRLFMSK NRPPLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 261 MRRLVRFMDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFD 440
           + RL+++M GK  KI V+VG +TDD RVY++P +KV AL+FTETARARI  AGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 441 QLALRAPLGQNTLLLRGPKNA 503
           QLALR PL  +T+LLRGPKNA
Sbjct: 121 QLALRLPL-TDTVLLRGPKNA 140

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>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)|
          Length = 186

 Score =  179 bits (455), Expect = 3e-45
 Identities = 90/146 (61%), Positives = 112/146 (76%), Gaps = 2/146 (1%)
 Frame = +3

Query: 72  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 251
           MGID  +    +   RTAPKSD+VYLKLLVKLY FL RRT + FN V+LK LF+SK NRP
Sbjct: 1   MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60

Query: 252 PLSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGE 425
           P+S+ R+ R +  +G A+K  V+VGT+TDD R++E P   VAALRFT  ARA+IV AGGE
Sbjct: 61  PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120

Query: 426 CLTFDQLALRAPLGQNTLLLRGPKNA 503
           C+T DQLA+RAP GQNTL+LRGP+N+
Sbjct: 121 CITLDQLAVRAPKGQNTLILRGPRNS 146

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>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)|
          Length = 187

 Score =  171 bits (434), Expect = 8e-43
 Identities = 86/145 (59%), Positives = 112/145 (77%), Gaps = 2/145 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           GID +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 59

Query: 255 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 428
           LSM RL+R M   G+ +K AV+VG ITDD R+++IP +KV AL+ T   R+RI+ +GG+ 
Sbjct: 60  LSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQI 119

Query: 429 LTFDQLALRAPLGQNTLLLRGPKNA 503
           +TFDQLAL AP GQNT+LL GP+ A
Sbjct: 120 MTFDQLALAAPKGQNTVLLSGPRKA 144

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>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18|
          Length = 187

 Score =  168 bits (426), Expect = 7e-42
 Identities = 85/145 (58%), Positives = 110/145 (75%), Gaps = 2/145 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           G+D +   ++++  RT PKS D+YL+LLVKLYRFL RR+ + FN V+LKRLFMSKTNRPP
Sbjct: 1   GVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPP 59

Query: 255 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 428
           L++ RL+R M   G+ +KIAV+VGTITDD R+  IP +KV ALR T  AR RI+ AGG+ 
Sbjct: 60  LALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQV 119

Query: 429 LTFDQLALRAPLGQNTLLLRGPKNA 503
           +TFDQLA+  P GQ T+LL GP+ A
Sbjct: 120 MTFDQLAVTTPKGQGTVLLSGPRKA 144

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>RL18_RAT (P12001) 60S ribosomal protein L18|
          Length = 187

 Score =  168 bits (425), Expect = 9e-42
 Identities = 83/143 (58%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 255 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 428
           LS+ R++R M   G+ +K AV+VGTITDD R+ E+P +KV ALR +  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 119

Query: 429 LTFDQLALRAPLGQNTLLLRGPK 497
           LTFDQLAL +P G+ T+LL GP+
Sbjct: 120 LTFDQLALESPKGRGTVLLSGPR 142

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>RL18_MOUSE (P35980) 60S ribosomal protein L18|
          Length = 187

 Score =  167 bits (424), Expect = 1e-41
 Identities = 82/143 (57%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 255 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 428
           LS+ R++R M   G+ +K AV+VGT+TDD R+ E+P +KV ALR +  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 119

Query: 429 LTFDQLALRAPLGQNTLLLRGPK 497
           LTFDQLAL +P G+ T+LL GP+
Sbjct: 120 LTFDQLALESPKGRGTVLLSGPR 142

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>RL18_HUMAN (Q07020) 60S ribosomal protein L18|
          Length = 187

 Score =  167 bits (424), Expect = 1e-41
 Identities = 85/143 (59%), Positives = 110/143 (76%), Gaps = 2/143 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 255 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 428
           LS+ R++R M   G+ +K AV+VGTITDD RV E+P +KV ALR T  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 119

Query: 429 LTFDQLALRAPLGQNTLLLRGPK 497
           LTFDQLAL +P G  T+LL GP+
Sbjct: 120 LTFDQLALDSPKGCGTVLLSGPR 142

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>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)|
          Length = 187

 Score =  166 bits (421), Expect = 3e-41
 Identities = 85/145 (58%), Positives = 110/145 (75%), Gaps = 2/145 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           GID +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 59

Query: 255 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 428
           LSM RL+R M    + +K AV+VG IT D R+++IP + V AL+ T  AR+RI+ AGG+ 
Sbjct: 60  LSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQI 119

Query: 429 LTFDQLALRAPLGQNTLLLRGPKNA 503
           +TFDQLAL AP GQNT+LL GP+ A
Sbjct: 120 MTFDQLALAAPKGQNTVLLSGPRKA 144

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>RL18_ORENI (P69091) 60S ribosomal protein L18|
          Length = 187

 Score =  165 bits (418), Expect = 6e-41
 Identities = 80/145 (55%), Positives = 112/145 (77%), Gaps = 2/145 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           G+D +   ++++  R  PKS D+YL+LLVKLYRFL RR+ + FN V+L+RLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 59

Query: 255 LSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 428
           +++ RL+R M   G+ +KIAV+VGT+TDD R+ +IP +K+ ALR T+ AR RI+ AGG+ 
Sbjct: 60  IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 119

Query: 429 LTFDQLALRAPLGQNTLLLRGPKNA 503
           +TFDQLAL +P GQ T+LL GP+ A
Sbjct: 120 MTFDQLALASPKGQGTVLLSGPRKA 144

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>RL18_OREMO (P69090) 60S ribosomal protein L18|
          Length = 187

 Score =  165 bits (418), Expect = 6e-41
 Identities = 80/145 (55%), Positives = 112/145 (77%), Gaps = 2/145 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           G+D +   ++++  R  PKS D+YL+LLVKLYRFL RR+ + FN V+L+RLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 59

Query: 255 LSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 428
           +++ RL+R M   G+ +KIAV+VGT+TDD R+ +IP +K+ ALR T+ AR RI+ AGG+ 
Sbjct: 60  IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 119

Query: 429 LTFDQLALRAPLGQNTLLLRGPKNA 503
           +TFDQLAL +P GQ T+LL GP+ A
Sbjct: 120 MTFDQLALASPKGQGTVLLSGPRKA 144

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>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B|
          Length = 187

 Score =  165 bits (418), Expect = 6e-41
 Identities = 87/148 (58%), Positives = 111/148 (75%), Gaps = 4/148 (2%)
 Frame = +3

Query: 72  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 251
           MGID +     ++++R+ P S++VYLKLLVKLYRFL RRT S+FN  ILKRLF SKTNRP
Sbjct: 1   MGID-IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRP 59

Query: 252 PLSMRRLVRFMDGKA----DKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAG 419
           P+S+ ++      K+     K  VIVGT+TDD+R+  +P + VAALRFT++ARARI+ AG
Sbjct: 60  PISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAG 119

Query: 420 GECLTFDQLALRAPLGQNTLLLRGPKNA 503
           GE LT DQLALRAP G NT+LLRG K+A
Sbjct: 120 GEVLTLDQLALRAPTGSNTVLLRGKKHA 147

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>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A|
          Length = 187

 Score =  165 bits (418), Expect = 6e-41
 Identities = 85/148 (57%), Positives = 112/148 (75%), Gaps = 4/148 (2%)
 Frame = +3

Query: 72  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 251
           MGID +     K+++R+ P S++VYLKLLVKLYRFL RRT S+FN  ILKRLF SKTNRP
Sbjct: 1   MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRP 59

Query: 252 PLSMRRLVRFMDGKA----DKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAG 419
           P+S+ ++      K+    +K  V+VGT+TDD+R+  +P + +AALRFT++ARARI+ AG
Sbjct: 60  PISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAG 119

Query: 420 GECLTFDQLALRAPLGQNTLLLRGPKNA 503
           GE LT DQLALRAP G NT+L+RG K+A
Sbjct: 120 GEVLTLDQLALRAPTGSNTVLVRGKKHA 147

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>RL18_TRYBB (P50885) 60S ribosomal protein L18|
          Length = 193

 Score =  146 bits (369), Expect = 3e-35
 Identities = 78/151 (51%), Positives = 101/151 (66%), Gaps = 8/151 (5%)
 Frame = +3

Query: 72  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 251
           MG+DL    + KR  R    S + Y+KLL+KLY+FL +RT S FN +I KRL  S+ NR 
Sbjct: 1   MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRA 60

Query: 252 PLSM--------RRLVRFMDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARI 407
           P+S+        RR V    GK   IAVIVG + DD R+  IPA+++ ALRF+++AR RI
Sbjct: 61  PISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERI 120

Query: 408 VNAGGECLTFDQLALRAPLGQNTLLLRGPKN 500
             AGGECLTFDQLA+ AP G+NT+LLRG K+
Sbjct: 121 TGAGGECLTFDQLAMMAPTGKNTMLLRGRKS 151

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>RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)|
          Length = 103

 Score =  117 bits (293), Expect = 2e-26
 Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
 Frame = +3

Query: 75  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 254
           G+D +   ++++ +R  PKS D+YL+LLVKL RFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 255 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALR 380
           LS+ R+ R M   G+  K AV+VGTITDD R  E+P +KV ALR
Sbjct: 60  LSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 103

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>RL18_SALSA (P24558) 60S ribosomal protein L18|
          Length = 179

 Score =  105 bits (261), Expect = 9e-23
 Identities = 62/147 (42%), Positives = 98/147 (66%), Gaps = 3/147 (2%)
 Frame = +3

Query: 72  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRR-TKSQFNAVILKRLFMSKTNR 248
           MGI ++   +++  +   P S+D+   LLVK+YR    + + + FN V+L+RLFMS+T+R
Sbjct: 1   MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHR 57

Query: 249 PPLSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGG 422
           PP+S+ R++R M   G+ ++ AV+VGT+TDD R++EIP +KV+AL+ T   R RI+    
Sbjct: 58  PPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-V 116

Query: 423 ECLTFDQLALRAPLGQNTLLLRGPKNA 503
           + + F  LAL AP  Q ++LL  P+NA
Sbjct: 117 QIMRFVGLALAAPNRQKSVLLSAPRNA 143

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>RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e|
          Length = 120

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 36/124 (29%), Positives = 63/124 (50%)
 Frame = +3

Query: 114 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGK 293
           KRT P   D  L+ L++  R      K +    I  RL   +  R  +++ R+ R+   K
Sbjct: 2   KRTGPT--DPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRY--AK 57

Query: 294 ADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQN 473
              + V+ G++    ++ +   + VAA +F+ETAR +I  AGGE +T ++L  R P G  
Sbjct: 58  DGDMIVVPGSVLGAGKIEK--KVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSG 115

Query: 474 TLLL 485
            +++
Sbjct: 116 VIIM 119

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>RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e|
          Length = 121

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 32/124 (25%), Positives = 62/124 (50%)
 Frame = +3

Query: 114 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGK 293
           KRT P   D+ L+ L++  R        +    I  RL   +  R  +++ ++ R+   K
Sbjct: 3   KRTGPT--DINLRRLIRTLRKKSNEEGVKIWKDIAWRLERPRRQRAEVNISKINRYT--K 58

Query: 294 ADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQN 473
              + ++ G++    R+     + VAA +F+E AR +I+ AGGE ++ ++L  R P G  
Sbjct: 59  EGDVVIVPGSVLGAGRLEH--KVVVAAWKFSEAARRKIIEAGGEAISIEELMERNPKGSG 116

Query: 474 TLLL 485
            +++
Sbjct: 117 VIIM 120

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>RL18E_PYRHO (O59302) 50S ribosomal protein L18e|
          Length = 120

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
 Frame = +3

Query: 114 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAV---ILKRLFMSKTNRPPLSMRRLVRFM 284
           KRT P   +     L +L RFL +++  +   +   +  RL   +  R  +++ ++ R+ 
Sbjct: 2   KRTGPTDPN-----LRRLIRFLKKKSNEEGVKIWKDLAWRLERPRRQRAEVNVSKINRY- 55

Query: 285 DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPL 464
             K   + V+ G++    ++ +   + VAA +F+ETAR +I  AGGE +T ++L  R P 
Sbjct: 56  -AKDGDMIVVPGSVLGAGKLEK--KVIVAAWKFSETARKKITEAGGEAITIEELIERNPK 112

Query: 465 GQNTLLL 485
           G   +++
Sbjct: 113 GSGVIIM 119

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>RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e|
          Length = 120

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
 Frame = +3

Query: 114 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILK----RLFMSKTNRPPLSMRRLVRF 281
           KRT P   +     L +L R+L R+  +++   I K    RL   +  R  +++ ++ R+
Sbjct: 2   KRTGPTDPN-----LRRLIRYL-RKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRY 55

Query: 282 MDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAP 461
            +    ++ V+ G++    ++ +   + VAA +F+ETAR +I+ AGGE +T ++L  R P
Sbjct: 56  AND--GEMIVVPGSVLGAGKLEK--KVIVAAWKFSETARRKIIEAGGEAITIEELIERNP 111

Query: 462 LGQNTLLL 485
            G    ++
Sbjct: 112 TGSGVRIM 119

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>RL18E_METTH (O26145) 50S ribosomal protein L18e|
          Length = 121

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
 Frame = +3

Query: 156 LVKLYRFLVRRTKSQFNAV---ILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTI 326
           L+KL R L +++  +  A+   + +RL     NR  +++ ++ R  D   D+  ++ G +
Sbjct: 12  LIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSD--EDETVLVPGKV 69

Query: 327 TDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLL 485
                +     ++V AL F++TAR +I  AGGECLT  ++    P  +N  ++
Sbjct: 70  LGSGNLDH--RVQVVALSFSQTARDKIERAGGECLTLGKIVEENPAIKNIKII 120

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>RL18E_METJA (P54022) 50S ribosomal protein L18e|
          Length = 121

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
 Frame = +3

Query: 156 LVKLYRFLVR---RTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTI 326
           LVKL   L +   + +++    I +RL   +  R  +++ ++ R+   K   + ++ G +
Sbjct: 12  LVKLIEILKQESYKNQAKIWKDIARRLAKPRRRRAEVNLSKINRYT--KEGDVVLVPGKV 69

Query: 327 TDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLL 485
               ++     + VAA  F+ETA+  I  AGGE +T ++L  R P G N  ++
Sbjct: 70  LGAGKLEH--KVVVAAFAFSETAKKLIKEAGGEAITIEELIKRNPKGSNVKIM 120

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>RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e|
          Length = 127

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
 Frame = +3

Query: 156 LVKLYRFLVRRTKSQFNAVILK----RLFMSKTNRPPLSMRRLVRFMDGKA-------DK 302
           L KL R L ++   ++NA + +    RL   +  R  +++ +L    DG A       ++
Sbjct: 13  LRKLIRDL-KKAACEYNAPVWRDVAERLSRPRRQRAEVNVGKL----DGLARRGVIQEEE 67

Query: 303 IAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLG 467
             ++ G +  D  + +   ++VAA RF+ TAR +I  AGGECLT  +L    P G
Sbjct: 68  TVLVPGKVLGDGVITQ--PLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEG 120

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>RL18E_ARCFU (O29138) 50S ribosomal protein L18e|
          Length = 117

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 22/91 (24%), Positives = 47/91 (51%)
 Frame = +3

Query: 213 ILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTET 392
           + +RL   +  +  +++ ++ ++   K ++  V+ G +     + +   +KVAAL F+E 
Sbjct: 30  VAERLAKPRRLQAEVNVSKIEKY--AKPNEYVVVPGKVLGSGSITK--PVKVAALSFSEK 85

Query: 393 ARARIVNAGGECLTFDQLALRAPLGQNTLLL 485
           A ++I  AGG C+  ++L    P G    L+
Sbjct: 86  AASKIREAGGVCMKIEELLKENPKGSGVRLM 116

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>RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e|
          Length = 120

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 366 VAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLL 485
           VAA  F+ETA++ I   GG+CLT ++L    P G    ++
Sbjct: 80  VAAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIM 119

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>RL18E_METMA (Q8PW46) 50S ribosomal protein L18e|
          Length = 126

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 366 VAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLLR 488
           VAA+ F+E+A  +I  AGG+CL+ +++    P G    + R
Sbjct: 86  VAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGSGIRIFR 126

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>RL18E_METAC (Q8TT44) 50S ribosomal protein L18e|
          Length = 126

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 366 VAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLLR 488
           +AAL F+++A  +I  AGG+CL+ +++    P G    + R
Sbjct: 86  IAALTFSDSAFEKITEAGGKCLSLEEIMEANPKGSGIRIFR 126

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>RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e|
          Length = 122

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 24/113 (21%), Positives = 53/113 (46%)
 Frame = +3

Query: 147 LKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTI 326
           L++L +  R   R   +    V+ + +   +  R  +++ +L R    K   + V+ G +
Sbjct: 13  LRMLARFLRKAARANSASIWRVVAEFVEKPRRQRVIVNVGKLNRV--AKEGDVVVVPGKL 70

Query: 327 TDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLL 485
               ++ +   + VAA++ +  A  +++ AGGE LT  +L  + P G    ++
Sbjct: 71  LAGGQLNK--KIIVAAVKISPKAARKVIEAGGEVLTIPELVRKYPRGSGVRIV 121

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>PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependent|
            carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC
            3.5.2.3)]
          Length = 2185

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 500  VLGTPQEKRVLSKRSTEGELVKGKALATSVDNPGPR 393
            + G   E R+L KRS   +L+KGK LAT    P  R
Sbjct: 1899 LFGIAHEMRILVKRSGGSDLLKGKVLATLFYEPSTR 1934

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>FBSH_HUMAN (Q9HAH7) Probable fibrosin-1 long transcript protein|
          Length = 372

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 146 PQAARQALPLPGAEDQEPVQRRDPEAALHEQDK 244
           P+AAR     PG++ + PV+RR+P     E+D+
Sbjct: 153 PEAART----PGSDKERPVERREPSITKEEKDR 181

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>VG54_ICHV1 (Q00158) Hypothetical gene 54 protein|
          Length = 607

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 156 LVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRF---MDGKADKIAVI 314
           L+ + RF +   ++ F   I +R+FM   +  P +   + +F   MD  ADK A++
Sbjct: 321 LLGIIRFFIACLRAGFRGTIFRRIFMRYLDDDPSTRETVTKFMGAMDTAADKYALL 376

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>KLCB2_ECOLI (P52605) Protein klcB|
          Length = 461

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 116 AHGAQVGRCVPQAARQALPLPGAEDQEPV-QRRDPEAALHEQDKPAAALDAP 268
           AH A + R    +A+  L    A+ QEP  QRR+P      + +PA   DAP
Sbjct: 328 AHQAFIARKWAASAKAKLAAARAKAQEPAGQRREPVTPAKPEPEPAKDEDAP 379

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>CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2|
          Length = 580

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +2

Query: 149 QAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPPRQVHGWEGGQDRCDRGHHH 328
           +A R+ALP   AE    ++ RDPEA    + + +  LD           G +  D  H  
Sbjct: 261 EAVRRALP---AEFVAEIEGRDPEARKRRKMESSYGLD-----------GYEAPDEVHFA 306

Query: 329 R*PEGLRDTGNEGGRAQVHRDGEGQD 406
           R  + +   G  G   Q+  +G G++
Sbjct: 307 RGAQAVNPVGRRGFEDQLMLEGGGEE 332

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>BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Cellulose|
           synthase regulatory subunit) (Cellulose synthase protein
           B) (CDGBP)
          Length = 802

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +2

Query: 116 AHGAQVGRCVPQAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPP 271
           A GAQ     P A++   P P   D  P+    P+AA      PAAA  APP
Sbjct: 13  ATGAQAA---PVASKAPAPQPAGSDLPPLPAAPPQAA-----PPAAASAAPP 56

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>FADI_ERWCT (Q6D2L6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty acid|
           oxidation complex beta subunit) (Beta-ketothiolase)
           (Acetyl-CoA acyltransferase) (Acyl-CoA ligase) (ACSs)
          Length = 437

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 338 LVIGDGAHDHSDLVRLPIHEPDEAAHRERRPVCLAHEEPLQDHGVELALGPPHQEAVELD 159
           L +GD A   +    +   E DE AHR  +    A E  +    V  A  PP+++A+  D
Sbjct: 182 LRMGDTAEQMAKTYGITREEQDELAHRSHKLAAQAWESGVLRDEVMTAYVPPYEKALSED 241

Query: 158 EQL 150
             +
Sbjct: 242 NNV 244

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>ARS_STRPU (P50473) Arylsulfatase precursor (EC 3.1.6.1) (AS) (Aryl-sulfate|
           sulphohydrolase) (ARS)
          Length = 567

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 347 RDTGNEGGRAQVHRDGEGQDCQRWWRVPYL 436
           R+   EGG A V R G+GQ  +   R+PY+
Sbjct: 328 REYCGEGGDANVFRGGKGQSWEGGHRIPYI 357

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>FADI_PHOLL (Q7N287) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty acid|
           oxidation complex beta subunit) (Beta-ketothiolase)
           (Acetyl-CoA acyltransferase) (Acyl-CoA ligase) (ACSs)
          Length = 436

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = -3

Query: 338 LVIGDGAHDHSDLVRLPIHEPDEAAHRERRPVCLAHEEPLQDHGVELALGPPHQEAVELD 159
           L +GD A   +   R+   + D  AHR       A E+ L    V  A  PP++EA+  D
Sbjct: 182 LRMGDTAEQMAKTYRISREDQDALAHRSHILAAKAWEQGLLVDEVMTAHFPPYREALLED 241

Query: 158 EQLEVHIVRLGRRALGP 108
             +  + V      L P
Sbjct: 242 NNIRKNSVLTSYAKLRP 258

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>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 209 GVELALGPPHQEAVELDEQLEVHIVRLGRRALGPLVAAAGDEVDTHG 69
           G+ LA G  H+ AV +  Q    IV   +R   PL  +A   +DTHG
Sbjct: 141 GLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHG 187

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>SODE_HUMAN (P08294) Extracellular superoxide dismutase [Cu-Zn] precursor (EC|
           1.15.1.1) (EC-SOD)
          Length = 240

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 191 QEPVQRRDPEAALHE--QDKPAAALDAPPRQVHG 286
           QE +QRRD +  LH   Q +P+A LDA   +V G
Sbjct: 47  QEVMQRRDDDGTLHAACQVQPSATLDAAQPRVTG 80

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>DIHR_ACHDO (Q16983) Diuretic hormone receptor precursor (DH-R)|
          Length = 441

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = +2

Query: 104 QEDQAHGAQVGRCVPQAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPPRQVH 283
           + D    A+      QA     P         +QR+    AL E D P AA DAP R   
Sbjct: 6   EADALEAAEAAAAAAQAVAADAPTT-TPSPRTLQRQRACEALMEGDAPDAAPDAPLRCAI 64

Query: 284 GWEG 295
            W+G
Sbjct: 65  AWDG 68

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>ANDR_CANFA (Q9TT90) Androgen receptor (Dihydrotestosterone receptor)|
          Length = 907

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 149 QAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPPRQVHGWEGGQD 304
           Q+ R+ +  PG    E V    P A L +Q +     +  PRQ    + G D
Sbjct: 28  QSVREVIQNPGPRHPEAVSAAPPGAHLQQQQQQQQQQETSPRQQQQQQQGDD 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,115,800
Number of Sequences: 219361
Number of extensions: 1277580
Number of successful extensions: 4484
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 4277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4467
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result