ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483854.1| Oryza sativa (japonica cultivar-group), mRNA 212 9e-52
2dbj|AK065186.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 9e-52
3gb|AY103941.1| Zea mays PCO095480 mRNA sequence 82 2e-12
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6gb|AF024533.1| Homo sapiens cosmid 123E15, complete sequence 42 1.9
7gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 1.9
8gb|AC005086.2| Homo sapiens BAC clone CTA-305I2 from 7, complete... 42 1.9
9ref|XM_649455.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 42 1.9
10gb|AC145919.3| Pan troglodytes BAC clone RP43-10A14 from 7, comp... 42 1.9
11gb|AC148297.3| Pan troglodytes BAC clone CH251-542K24 from chrom... 42 1.9
12gb|AC096679.3| Pan troglodytes clone RP43-142I13, complete sequence 42 1.9
13emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B1... 42 1.9
14gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosom... 42 1.9
15gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, com... 40 7.5
16gb|AF211176.2| Botryotinia fuckeliana cystathionine beta-lyase (... 40 7.5
17gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.5
18gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.5
19emb|BX323006.12| Zebrafish DNA sequence from clone CH211-145H19 ... 40 7.5
20gb|AC091928.3| Homo sapiens chromosome 5 clone RP11-292F10, comp... 40 7.5
21gb|AC022161.8| Homo sapiens chromosome 16 clone RP11-273P11, com... 40 7.5
22emb|AL111267.1|CNS0196Z Botrytis cinerea strain T4 cDNA library 40 7.5
23gb|AC009102.10| Homo sapiens chromosome 16 clone RP11-441F2, com... 40 7.5
24gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome... 40 7.5
25dbj|AB164631.1| Streptomyces griseus AdBS2 gene cluster (orf6-Ad... 40 7.5
26emb|BX088547.12| Zebrafish DNA sequence from clone DKEY-238O14, ... 40 7.5 
>ref|XM_483854.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1538

 Score =  212 bits (107), Expect = 9e-52
 Identities = 274/329 (83%), Gaps = 3/329 (0%)
 Strand = Plus / Plus

                                                                       
Query: 162 gccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaagac---gaccag 218
           ||||||||| |||||| |||||||| |||||||||||||||||||||| ||   ||||||
Sbjct: 309 gccgccttcgtcgatgccgcgtcgcgccgctacctgcgggatcagcaacaccacgaccag 368

                                                                       
Query: 219 gccacgtccatgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttgca 278
           ||| | || |||||||| ||  |||||||||| |||||||||||||||||||| ||||||
Sbjct: 369 gccgcttcaatgtcactagaccaagtttctgcggctgtttctgtcttgcttggttttgca 428

                                                                       
Query: 279 ccatctgccatgcttcctgcaccttcttctgcaaagttaaataagctgctactgccaaaa 338
           ||| |  ||  ||| |||||||  |||||| |||||||| | |||||| |||| || || 
Sbjct: 429 ccaccaccctcgctacctgcacaatcttcttcaaagttagacaagctgttactccctaac 488

                                                                       
Query: 339 ccatttgacaggcctcgtgctgttttcttggtgcaaattgatggatcccatgactctgtt 398
           ||||||||||| || || |||||||||||| ||||||| ||||||| ||||| ||| |||
Sbjct: 489 ccatttgacagaccacgggctgttttcttgctgcaaatcgatggattccatgcctccgtt 548

                                                                       
Query: 399 gatagcttcatatctgatgctggtagtgtttacaaaaccaagattgatagtgcaaaaaat 458
           || ||| ||| |||||| ||||||||  | | ||||||||  |||||| ||  ||   ||
Sbjct: 549 gaaagcatcacatctgaagctggtagcatcttcaaaaccactattgatggtctaagcgat 608

                                        
Query: 459 gctgctacagggcttacagataaggatga 487
            ||||||||||||||||||||||||||||
Sbjct: 609 tctgctacagggcttacagataaggatga 637
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>dbj|AK065186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D24, full
           insert sequence
          Length = 1538

 Score =  212 bits (107), Expect = 9e-52
 Identities = 274/329 (83%), Gaps = 3/329 (0%)
 Strand = Plus / Plus

                                                                       
Query: 162 gccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaagac---gaccag 218
           ||||||||| |||||| |||||||| |||||||||||||||||||||| ||   ||||||
Sbjct: 309 gccgccttcgtcgatgccgcgtcgcgccgctacctgcgggatcagcaacaccacgaccag 368

                                                                       
Query: 219 gccacgtccatgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttgca 278
           ||| | || |||||||| ||  |||||||||| |||||||||||||||||||| ||||||
Sbjct: 369 gccgcttcaatgtcactagaccaagtttctgcggctgtttctgtcttgcttggttttgca 428

                                                                       
Query: 279 ccatctgccatgcttcctgcaccttcttctgcaaagttaaataagctgctactgccaaaa 338
           ||| |  ||  ||| |||||||  |||||| |||||||| | |||||| |||| || || 
Sbjct: 429 ccaccaccctcgctacctgcacaatcttcttcaaagttagacaagctgttactccctaac 488

                                                                       
Query: 339 ccatttgacaggcctcgtgctgttttcttggtgcaaattgatggatcccatgactctgtt 398
           ||||||||||| || || |||||||||||| ||||||| ||||||| ||||| ||| |||
Sbjct: 489 ccatttgacagaccacgggctgttttcttgctgcaaatcgatggattccatgcctccgtt 548

                                                                       
Query: 399 gatagcttcatatctgatgctggtagtgtttacaaaaccaagattgatagtgcaaaaaat 458
           || ||| ||| |||||| ||||||||  | | ||||||||  |||||| ||  ||   ||
Sbjct: 549 gaaagcatcacatctgaagctggtagcatcttcaaaaccactattgatggtctaagcgat 608

                                        
Query: 459 gctgctacagggcttacagataaggatga 487
            ||||||||||||||||||||||||||||
Sbjct: 609 tctgctacagggcttacagataaggatga 637
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>gb|AY103941.1| Zea mays PCO095480 mRNA sequence
          Length = 1596

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 459 gctgctacagggcttacagataaggatgaattgattgtcattcgttcagatgaatct 515
           |||| |||||||||||||||||||||||| || |||||||||| |||||||||||||
Sbjct: 519 gctgatacagggcttacagataaggatgacttaattgtcattcattcagatgaatct 575



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 103/124 (83%), Gaps = 3/124 (2%)
 Strand = Plus / Plus

                                                                       
Query: 160 ccgccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaa---gacgacc 216
           |||||| ||||||||||| | |||||||||||||||| ||||| ||||||   ||| |||
Sbjct: 223 ccgccgtcttcatcgatgcctcgtcgcaccgctaccttcgggaccagcaagccgaccacc 282

                                                                       
Query: 217 aggccacgtccatgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttg 276
           ||| | | || |||||  |  ||||||||||||| | |||||||||||||||||| || |
Sbjct: 283 aggacgcttcaatgtcgttaaatgaagtttctgcggttgtttctgtcttgcttggtttcg 342

               
Query: 277 cacc 280
           ||||
Sbjct: 343 cacc 346



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 339 ccatttgacaggcctcgtgctgttttcttggtgcaaattgatgg 382
           |||||||| || || |||||||||||| | ||||||||||||||
Sbjct: 405 ccatttgatagaccgcgtgctgttttcctcgtgcaaattgatgg 448
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 162      gccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaa 209
                ||||||||| |||||| |||||||| ||||||||||||||||||||||
Sbjct: 28387126 gccgccttcgtcgatgccgcgtcgcgccgctacctgcgggatcagcaa 28387173



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                      
Query: 228      atgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttgcacca 281
                |||||||| ||  |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 28387363 atgtcactagaccaagtttctgcggctgtttctgtcttgcttggttttgcacca 28387416



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                            
Query: 321      aagctgctactgccaaaaccatttgacaggcctcgtgctgttttcttggtgcaaattgat 380
                |||||| |||| || || ||||||||||| || || |||||||||||| ||||||| |||
Sbjct: 28387540 aagctgttactccctaacccatttgacagaccacgggctgttttcttgctgcaaatcgat 28387599

                          
Query: 381      ggatcccatg 390
                |||| |||||
Sbjct: 28387600 ggattccatg 28387609
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>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0044E16
          Length = 153296

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                              
Query: 162    gccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaa 209
              ||||||||| |||||| |||||||| ||||||||||||||||||||||
Sbjct: 115932 gccgccttcgtcgatgccgcgtcgcgccgctacctgcgggatcagcaa 115979



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                    
Query: 228    atgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttgcacca 281
              |||||||| ||  |||||||||| |||||||||||||||||||| |||||||||
Sbjct: 116169 atgtcactagaccaagtttctgcggctgtttctgtcttgcttggttttgcacca 116222



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                          
Query: 321    aagctgctactgccaaaaccatttgacaggcctcgtgctgttttcttggtgcaaattgat 380
              |||||| |||| || || ||||||||||| || || |||||||||||| ||||||| |||
Sbjct: 116346 aagctgttactccctaacccatttgacagaccacgggctgttttcttgctgcaaatcgat 116405

                        
Query: 381    ggatcccatg 390
              |||| |||||
Sbjct: 116406 ggattccatg 116415
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>gb|AF024533.1| Homo sapiens cosmid 123E15, complete sequence
          Length = 84912

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 361   ttttcttggtgcaaattgatg 381
             |||||||||||||||||||||
Sbjct: 51894 ttttcttggtgcaaattgatg 51914
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>gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete
             sequence
          Length = 214292

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 463   ctacagggcttacagataagg 483
             |||||||||||||||||||||
Sbjct: 83347 ctacagggcttacagataagg 83367
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>gb|AC005086.2| Homo sapiens BAC clone CTA-305I2 from 7, complete sequence
          Length = 129586

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 361    ttttcttggtgcaaattgatg 381
              |||||||||||||||||||||
Sbjct: 122763 ttttcttggtgcaaattgatg 122743
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>ref|XM_649455.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (50.t00039)
            partial mRNA
          Length = 4989

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 527  tgttcttgataatgaaactga 547
            |||||||||||||||||||||
Sbjct: 3927 tgttcttgataatgaaactga 3907
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>gb|AC145919.3| Pan troglodytes BAC clone RP43-10A14 from 7, complete sequence
          Length = 174235

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 361   ttttcttggtgcaaattgatg 381
             |||||||||||||||||||||
Sbjct: 75729 ttttcttggtgcaaattgatg 75709
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>gb|AC148297.3| Pan troglodytes BAC clone CH251-542K24 from chromosome 7, complete
             sequence
          Length = 192516

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 361   ttttcttggtgcaaattgatg 381
             |||||||||||||||||||||
Sbjct: 42538 ttttcttggtgcaaattgatg 42518
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>gb|AC096679.3| Pan troglodytes clone RP43-142I13, complete sequence
          Length = 194020

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 361    ttttcttggtgcaaattgatg 381
              |||||||||||||||||||||
Sbjct: 110447 ttttcttggtgcaaattgatg 110427
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>emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B10, complete sequence
          Length = 182378

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    ctgcaaagttaaataagctgc 327
              |||||||||||||||||||||
Sbjct: 139516 ctgcaaagttaaataagctgc 139496
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>gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosome unknown, complete
              sequence
          Length = 238934

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 259    ctgtcttgcttggctttgcaccatc 283
              ||||||| |||||||||||||||||
Sbjct: 143501 ctgtcttacttggctttgcaccatc 143525
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>gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, complete sequence
          Length = 193188

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 413  tgatgctggtagtgtttaca 432
            ||||||||||||||||||||
Sbjct: 5464 tgatgctggtagtgtttaca 5445
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>gb|AF211176.2| Botryotinia fuckeliana cystathionine beta-lyase (metC) gene,
           complete cds
          Length = 2921

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 ttgatgaagtttctgcagct 254
           ||||||||||||||||||||
Sbjct: 397 ttgatgaagtttctgcagct 378
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    atgccgccgccttcatcgat 176
              ||||||||||||||||||||
Sbjct: 751815 atgccgccgccttcatcgat 751796
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 163     ccgccttcatcgatggcgcgtcgc 186
               ||||||||||| ||||||||||||
Sbjct: 1759053 ccgccttcatccatggcgcgtcgc 1759030
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>emb|BX323006.12| Zebrafish DNA sequence from clone CH211-145H19 in linkage group 15,
              complete sequence
          Length = 161776

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    ttctgcagctgtttctgtct 264
              ||||||||||||||||||||
Sbjct: 129193 ttctgcagctgtttctgtct 129212
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>gb|AC091928.3| Homo sapiens chromosome 5 clone RP11-292F10, complete sequence
          Length = 200923

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 503   ttcagatgaatcttctggatcagg 526
             ||||||||||||||||| ||||||
Sbjct: 45425 ttcagatgaatcttctgaatcagg 45448
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>gb|AC022161.8| Homo sapiens chromosome 16 clone RP11-273P11, complete sequence
          Length = 181541

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    tgatgctggtagtgtttaca 432
              ||||||||||||||||||||
Sbjct: 116441 tgatgctggtagtgtttaca 116422
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>emb|AL111267.1|CNS0196Z Botrytis cinerea strain T4 cDNA library
          Length = 780

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 ttgatgaagtttctgcagct 254
           ||||||||||||||||||||
Sbjct: 261 ttgatgaagtttctgcagct 280
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>gb|AC009102.10| Homo sapiens chromosome 16 clone RP11-441F2, complete sequence
          Length = 183394

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   tgatgctggtagtgtttaca 432
             ||||||||||||||||||||
Sbjct: 85557 tgatgctggtagtgtttaca 85576
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>gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome unknown, complete
              sequence
          Length = 250515

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 409    tatctgatgctggtagtgtt 428
              ||||||||||||||||||||
Sbjct: 139940 tatctgatgctggtagtgtt 139959
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>dbj|AB164631.1| Streptomyces griseus AdBS2 gene cluster (orf6-AdBS2, orf5-AdBS2,
            orf1-AdBS2, orf2-AdBS2, orf3-AdBS2, orf4-AdBS2), complete
            and partial cds
          Length = 6620

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 512  atcttctggatcaggtgttc 531
            ||||||||||||||||||||
Sbjct: 3431 atcttctggatcaggtgttc 3412
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>emb|BX088547.12| Zebrafish DNA sequence from clone DKEY-238O14, complete sequence
          Length = 256446

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    ttctgcagctgtttctgtct 264
              ||||||||||||||||||||
Sbjct: 249740 ttctgcagctgtttctgtct 249721


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,840,035
Number of Sequences: 3902068
Number of extensions: 4840035
Number of successful extensions: 98549
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98352
Number of HSP's gapped (non-prelim): 193
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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