ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart27g05 |
|---|---|
| Clone Library Name | barley_pub |
>IMDH_METJA (Q59011) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 496 Score = 34.3 bits (77), Expect = 0.24 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -1 Query: 446 ESPGRQLVAVAVVDEPLLRQTQLLAADGEEGEAVGVHE-YDLAGRAAGVGLDAEDEVAVA 270 E Q+ AV DE +++ ++ D GEA+ V E Y ++G +D ED++ Sbjct: 80 EEQVHQVQAVKKADEVVIKDVITVSPDDTVGEAINVMETYSISGLPV---VDNEDKLVGI 136 Query: 269 VEHREPLAVEEQ 234 + HR+ A+E++ Sbjct: 137 ITHRDVKAIEDK 148
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = -1 Query: 548 PAARRIPSRTVQRSRRRQATEGLCREQTHVPPRRESPGRQ 429 P R SR+V RSR R + + R T PPRR++P +Q Sbjct: 721 PIRGRSYSRSVSRSRSRSYSRSVSRSPT--PPRRQAPAQQ 758
>CYSJ_ECO57 (Q8X7U1) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 598 Score = 30.4 bits (67), Expect = 3.5 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 15/80 (18%) Frame = -1 Query: 449 RESPGRQLVAVAVVD--EPLLRQTQLLAADGEEGE-----AVGVHEYDLAGRAAGVG--- 300 R SP QL A A+++ PL + +A+ EE E VGV YD+ GRA G Sbjct: 364 RFSPA-QLDAEALINLLRPLTPRLYSIASSQEEVENEVHVTVGVVRYDVEGRARAGGASS 422 Query: 299 -----LDAEDEVAVAVEHRE 255 ++ E EV V +EH + Sbjct: 423 FLADRVEEEGEVRVFIEHND 442
>AROK_PYRKO (Q5JFT2) Shikimate kinase (EC 2.7.1.71) (SK)| Length = 271 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Frame = +3 Query: 201 EAVSLTV---WRRSLLFNGKGFTVFDSNGNLVFRVETYARGSPREVVLMDADGLALLTVR 371 EAV L + WR++ L NG ++ + + FR+ RG+ VV + G A+ V Sbjct: 194 EAVRLALEGEWRKAALINGLVYSTYLGHPIEPFRI-ALERGA---VVGLSGKGPAVFAVT 249 Query: 372 RKKLSLAEEW 401 + LAEEW Sbjct: 250 NEPEELAEEW 259
>GCST_NOCFA (Q5YZ49) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage| system T protein) Length = 366 Score = 30.0 bits (66), Expect = 4.5 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 11/83 (13%) Frame = -1 Query: 440 PGRQLVAVAVVDEPLLRQTQLLAADGEE-GEA----------VGVHEYDLAGRAAGVGLD 294 P R L+ + +D +LRQ Q + DGE GE VG+ LA G GL+ Sbjct: 281 PRRILMGLKAIDRGVLRQGQPVLRDGEPVGETTSGTFSPTLKVGI---ALALLDTGAGLE 337 Query: 293 AEDEVAVAVEHREPLAVEEQRPP 225 EVAV V R L E +PP Sbjct: 338 PGAEVAVDVRGRR-LRCEVVKPP 359
>GCST_GEOKA (Q5KX76) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage| system T protein) Length = 364 Score = 30.0 bits (66), Expect = 4.5 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 452 RRESPGRQLVAVAVVDEPLLRQTQLLAADGEE 357 + E P R+LV + ++D + R L+ ADGEE Sbjct: 277 KEEGPPRRLVGIEMIDRGIPRHGYLVFADGEE 308
>CYSJ_SALTY (P38039) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 598 Score = 30.0 bits (66), Expect = 4.5 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 15/80 (18%) Frame = -1 Query: 449 RESPGRQLVAVAVVD--EPLLRQTQLLAADGEEGEA-----VGVHEYDLAGRAAGVG--- 300 R SP QL A A++D PL + +A+ E E+ VGV YD+ GRA G Sbjct: 364 RFSPA-QLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASS 422 Query: 299 -----LDAEDEVAVAVEHRE 255 ++ E EV V +EH + Sbjct: 423 FLADRVEEEGEVRVFIEHND 442
>CYSJ_SALTI (Q8Z458) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 598 Score = 30.0 bits (66), Expect = 4.5 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 15/80 (18%) Frame = -1 Query: 449 RESPGRQLVAVAVVD--EPLLRQTQLLAADGEEGEA-----VGVHEYDLAGRAAGVG--- 300 R SP QL A A++D PL + +A+ E E+ VGV YD+ GRA G Sbjct: 364 RFSPA-QLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASS 422 Query: 299 -----LDAEDEVAVAVEHRE 255 ++ E EV V +EH + Sbjct: 423 FLADRVEEEGEVRVFIEHND 442
>MUTS_TREDE (P61672) DNA mismatch repair protein mutS| Length = 891 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = -1 Query: 365 GEEGEAVGVHEYDLAGRAAGVGLDAEDEVAVAVEHREPLAVEEQRPPPHGERHRLP 198 G G + G+H LAG V AE+ + + + ++ ++E RP G + P Sbjct: 788 GAAGNSYGIHVAGLAGIPQSVLTRAENLLYMRSQFQKERTIQEARPSAQGSEEKTP 843
>THIC_STRCO (Q9X9U0) Thiamine biosynthesis protein thiC| Length = 612 Score = 29.3 bits (64), Expect = 7.8 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = +3 Query: 225 RRSLLFNGKGFTVFDSNGNLVFRVETYARGSPREVVLMDADGLALLTVRRKKLSLAEEWL 404 R+ L NG+ T++D++G P L+D D VRR L E W+ Sbjct: 55 RQVHLTNGQSVTLYDTSG-------------PYTDPLVDTD------VRRGLAPLRENWI 95 Query: 405 VYDGDGDELAPR 440 + GD +E A R Sbjct: 96 IARGDTEEYAGR 107
>RPOB_LEIXX (Q6ACX5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1165 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = -1 Query: 395 LRQTQLLAADGEEGEAVGVHEYDLAGRAAGVGLDAEDEVAVAVEHREPLAVEEQRPPPHG 216 +R T L GEEG +GV +D D +DE+ V R + + ++R G Sbjct: 822 VRDTSLKVPHGEEGTIIGVKVFD--------AQDGDDELGSGVNQRVVVYIAQKRKITAG 873 Query: 215 ER 210 ++ Sbjct: 874 DK 875 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,421,643 Number of Sequences: 219361 Number of extensions: 1352004 Number of successful extensions: 4401 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4400 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
