Clone Name | bart27g01 |
---|---|
Clone Library Name | barley_pub |
>XTH25_ARATH (Q38907) Probable xyloglucan endotransglucosylase/hydrolase protein| 25 precursor (EC 2.4.1.207) (At-XTH25) (XTH-25) Length = 284 Score = 56.6 bits (135), Expect = 1e-08 Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 5/61 (8%) Frame = +3 Query: 207 FETEGNVRAGYDARGR-----QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAG 371 F+TE ++ G D RG+ ++ ++ LDR SG F+T++ YL+G+ +Q+KLVPGNSAG Sbjct: 30 FDTEFDITWG-DGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAG 88 Query: 372 T 374 T Sbjct: 89 T 89
>XTH8_ORYSA (Q76BW5) Xyloglucan endotransglycosylase/hydrolase protein 8| precursor (EC 2.4.1.207) (End-xyloglucan transferase) (OsXTH8) (OsXRT5) Length = 290 Score = 55.8 bits (133), Expect = 2e-08 Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 3/62 (4%) Frame = +3 Query: 198 HQEFETEG---NVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSA 368 +++F+ G +VR D Q ++ LDR SG F ++ +YL+G+FSVQMKLV GNSA Sbjct: 29 YEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSA 88 Query: 369 GT 374 GT Sbjct: 89 GT 90
>XTH24_ARATH (P24806) Xyloglucan endotransglucosylase/hydrolase protein 24| precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase) Length = 269 Score = 53.1 bits (126), Expect = 2e-07 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 5/62 (8%) Frame = +3 Query: 204 EFETEGNVRAGYDARGR-----QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSA 368 +F T+ NV G + RG+ Q+ ++ LD+ SG F+++ YL+G+ +Q+KLVPGNSA Sbjct: 23 DFNTDVNVAWG-NGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSA 81 Query: 369 GT 374 GT Sbjct: 82 GT 83
>XTH17_ARATH (O80803) Probable xyloglucan endotransglucosylase/hydrolase protein| 17 precursor (EC 2.4.1.207) (At-XTH17) (XTH-17) Length = 282 Score = 52.8 bits (125), Expect = 2e-07 Identities = 25/52 (48%), Positives = 35/52 (67%) Frame = +3 Query: 219 GNVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 G+ R R ++ S+ LD+ SG F++ + +LYG+ VQMKLVPGNSAGT Sbjct: 38 GDGRGKIHDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGT 89
>XTH18_ARATH (Q9M0D2) Probable xyloglucan endotransglucosylase/hydrolase protein| 18 precursor (EC 2.4.1.207) (At-XTH18) (XTH-18) Length = 282 Score = 52.4 bits (124), Expect = 3e-07 Identities = 25/52 (48%), Positives = 35/52 (67%) Frame = +3 Query: 219 GNVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 G+ R R ++ S+ LD+ SG F++ + +LYG+ VQMKLVPGNSAGT Sbjct: 38 GDGRGKVRDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGT 89
>XTH16_ARATH (Q8LG58) Probable xyloglucan endotransglucosylase/hydrolase protein| 16 precursor (EC 2.4.1.207) (At-XTH16) (XTH-16) Length = 291 Score = 52.4 bits (124), Expect = 3e-07 Identities = 24/59 (40%), Positives = 38/59 (64%) Frame = +3 Query: 198 HQEFETEGNVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 ++EF+ G G ++ S+ LDR SG F++++ YL+G+ +Q+KLV GNSAGT Sbjct: 28 NEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGT 86
>XTH22_ARATH (Q38857) Xyloglucan endotransglucosylase/hydrolase protein 22| precursor (EC 2.4.1.207) (At-XTH22) (XTH-22) (Touch protein 4) Length = 284 Score = 52.0 bits (123), Expect = 3e-07 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 5/50 (10%) Frame = +3 Query: 240 DARGR-----QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 D RG+ ++ ++ LD+ SG F+++ YL+G+ S+QMKLVPGNSAGT Sbjct: 33 DGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGT 82
>XTH19_ARATH (Q9M0D1) Probable xyloglucan endotransglucosylase/hydrolase protein| 19 precursor (EC 2.4.1.207) (At-XTH19) (XTH-19) Length = 277 Score = 51.6 bits (122), Expect = 5e-07 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 6/51 (11%) Frame = +3 Query: 240 DARGR------QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 D RG+ ++ S+ LD+ SG F++ + +LYG+ VQMKLVPGNSAGT Sbjct: 34 DGRGKIHDNQGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGT 84
>BRU1_SOYBN (P35694) Brassinosteroid-regulated protein BRU1 precursor| Length = 283 Score = 50.8 bits (120), Expect = 8e-07 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Frame = +3 Query: 198 HQEFE-TEGNVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 +Q+F+ T G RA G Q+ S+ LD+ SG F++++ YL+G+ +Q+KLV GNSAGT Sbjct: 33 YQDFDLTWGGDRAKI-FNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGT 91
>XTH20_ARATH (Q9FI31) Probable xyloglucan endotransglucosylase/hydrolase protein| 20 precursor (EC 2.4.1.207) (At-XTH20) (XTH-20) Length = 282 Score = 50.4 bits (119), Expect = 1e-06 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 6/51 (11%) Frame = +3 Query: 240 DARGR------QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 D RG+ + S+ LD+ SG F++ + +LYG+ VQMKLVPGNSAGT Sbjct: 39 DGRGKILDNVGNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGT 89
>XTH_TOBAC (P93349) Probable xyloglucan endotransglucosylase/hydrolase protein| precursor (EC 2.4.1.207) Length = 295 Score = 49.7 bits (117), Expect = 2e-06 Identities = 21/41 (51%), Positives = 31/41 (75%) Frame = +3 Query: 249 GRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAG 371 G +VLDR SG F++++SYL+G FS+++KLV G+SAG Sbjct: 50 GGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAG 90
>XTH15_ARATH (Q38911) Probable xyloglucan endotransglucosylase/hydrolase protein| 15 precursor (EC 2.4.1.207) (At-XTH15) (XTH-15) Length = 289 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/57 (40%), Positives = 35/57 (61%) Frame = +3 Query: 204 EFETEGNVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 EF+ G G + S+ LD+ SG F++++ YL+G+ +Q+KLV GNSAGT Sbjct: 31 EFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGT 87
>XTH1_LYCES (Q40144) Probable xyloglucan endotransglucosylase/hydrolase 1| precursor (EC 2.4.1.207) (LeXTH1) Length = 296 Score = 48.9 bits (115), Expect = 3e-06 Identities = 20/41 (48%), Positives = 31/41 (75%) Frame = +3 Query: 249 GRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAG 371 G ++LDR SG F++++SYL+G FS++M+LV G+SAG Sbjct: 51 GGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAG 91
>XTH13_ARATH (Q9FKL8) Putative xyloglucan endotransglucosylase/hydrolase protein| 13 precursor (EC 2.4.1.207) (At-XTH13) (XTH-13) Length = 284 Score = 48.9 bits (115), Expect = 3e-06 Identities = 25/54 (46%), Positives = 36/54 (66%) Frame = +3 Query: 213 TEGNVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 T GN RA G Q+ + LD+ SG F++++ YL+G+ ++MKLV GNSAGT Sbjct: 33 TWGNGRANIVESG-QLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGT 85
>XTH14_ARATH (Q9ZSU4) Xyloglucan endotransglucosylase/hydrolase protein 14| precursor (EC 2.4.1.207) (At-XTH14) (XTH-14) Length = 287 Score = 48.5 bits (114), Expect = 4e-06 Identities = 24/54 (44%), Positives = 36/54 (66%) Frame = +3 Query: 213 TEGNVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 T GN RA G Q+ + LD+ SG F++++ YL+G+ +++KLV GNSAGT Sbjct: 37 TWGNGRANIFENG-QLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGT 89
>XTH12_ARATH (Q9FKL9) Probable xyloglucan endotransglucosylase/hydrolase protein| 12 precursor (EC 2.4.1.207) (At-XTH12) (XTH-12) Length = 285 Score = 48.1 bits (113), Expect = 5e-06 Identities = 19/40 (47%), Positives = 31/40 (77%) Frame = +3 Query: 255 QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 Q+ + LD+ SG F++++ YL+G+ +++KLVPGNSAGT Sbjct: 47 QLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGT 86
>XTH21_ARATH (Q9ZV40) Probable xyloglucan endotransglucosylase/hydrolase protein| 21 precursor (EC 2.4.1.207) (At-XTH21) (XTH-21) Length = 305 Score = 47.8 bits (112), Expect = 7e-06 Identities = 20/34 (58%), Positives = 27/34 (79%) Frame = +3 Query: 273 LDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 LD+ SG F+++ YLYG+ +Q+KLVPGNSAGT Sbjct: 54 LDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGT 87
>XTH6_ARATH (Q8LF99) Probable xyloglucan endotransglucosylase/hydrolase protein| 6 precursor (EC 2.4.1.207) (At-XTH6) (XTH-6) Length = 292 Score = 47.4 bits (111), Expect = 9e-06 Identities = 22/54 (40%), Positives = 38/54 (70%) Frame = +3 Query: 213 TEGNVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 +E ++R D + Q +VLD+ +G F ++R YL+G+ S+++KL+PG+SAGT Sbjct: 44 SESHIRQMEDGKAIQ---LVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGT 94
>XTH_WHEAT (Q41542) Probable xyloglucan endotransglucosylase/hydrolase| precursor (EC 2.4.1.207) Length = 293 Score = 46.6 bits (109), Expect = 1e-05 Identities = 23/42 (54%), Positives = 32/42 (76%) Frame = +3 Query: 249 GRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 GR+V + LD+ +G F+TR SYL+G FS+ +KLV G+SAGT Sbjct: 51 GREV-QLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGT 91
>XTHB_PHAAN (Q8LNZ5) Probable xyloglucan endotransglucosylase/hydrolase protein| B precursor (EC 2.4.1.207) (VaXTH2) Length = 293 Score = 46.2 bits (108), Expect = 2e-05 Identities = 19/34 (55%), Positives = 28/34 (82%) Frame = +3 Query: 273 LDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 LD+ +G F+T+ SYL+G FS+ +K+VPG+SAGT Sbjct: 58 LDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGT 91
>XTH9_ARATH (Q8LDW9) Xyloglucan endotransglucosylase/hydrolase protein 9| precursor (EC 2.4.1.207) (At-XTH9) (XTH-9) Length = 290 Score = 45.8 bits (107), Expect = 2e-05 Identities = 20/40 (50%), Positives = 28/40 (70%) Frame = +3 Query: 255 QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 +V + LD SG F +R YL+G+ S+Q+KLV G+SAGT Sbjct: 47 EVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGT 86
>XTH23_ARATH (Q38910) Probable xyloglucan endotransglucosylase/hydrolase protein| 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) Length = 286 Score = 45.1 bits (105), Expect = 4e-05 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Frame = +3 Query: 240 DARGR-----QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 D RG+ + ++ LD+ SG F+++ YL+G+ +Q+KLV GNSAGT Sbjct: 36 DGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGT 85
>XTHA_PHAAN (Q41638) Xyloglucan endotransglucosylase/hydrolase protein A| precursor (EC 2.4.1.207) (VaXTH1) Length = 292 Score = 45.1 bits (105), Expect = 4e-05 Identities = 19/34 (55%), Positives = 28/34 (82%) Frame = +3 Query: 273 LDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 LD+ +G F+++ SYL+G FS+ +KLVPG+SAGT Sbjct: 57 LDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGT 90
>XTH_SOYBN (Q39857) Probable xyloglucan endotransglucosylase/hydrolase| precursor (EC 2.4.1.207) (Fragment) Length = 295 Score = 44.3 bits (103), Expect = 7e-05 Identities = 18/34 (52%), Positives = 28/34 (82%) Frame = +3 Query: 273 LDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 LD+ +G F+++ SYL+G FS+ +K+VPG+SAGT Sbjct: 59 LDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGT 92
>XTH5_ARATH (Q9XIW1) Probable xyloglucan endotransglucosylase/hydrolase protein| 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) Length = 293 Score = 44.3 bits (103), Expect = 7e-05 Identities = 19/42 (45%), Positives = 30/42 (71%) Frame = +3 Query: 249 GRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 G +VLD+ +G F+++ SYL+G FS+ +K+V G+SAGT Sbjct: 50 GGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGT 91
>XTH7_ARATH (Q8LER3) Probable xyloglucan endotransglucosylase/hydrolase protein| 7 precursor (EC 2.4.1.207) (At-XTH7) (XTH-7) Length = 293 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/42 (42%), Positives = 30/42 (71%) Frame = +3 Query: 249 GRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 G + + LD SG F +++ YL+G+ S+++KL+PG+SAGT Sbjct: 52 GGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGT 93
>XTH26_ARATH (Q9SVV2) Putative xyloglucan endotransglucosylase/hydrolase protein| 26 precursor (EC 2.4.1.207) (At-XTH26) (XTH-26) Length = 292 Score = 42.4 bits (98), Expect = 3e-04 Identities = 18/38 (47%), Positives = 29/38 (76%) Frame = +3 Query: 267 IVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGTDA 380 +VLD+ +G A +++ ++L+G + +KLVPGNSAGT A Sbjct: 51 LVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVA 88
>XTH_BRAOB (Q6YDN9) Xyloglucan endotransglucosylase/hydrolase precursor (EC| 2.4.1.207) (BobXET16A) Length = 295 Score = 39.3 bits (90), Expect = 0.002 Identities = 16/41 (39%), Positives = 28/41 (68%) Frame = +3 Query: 249 GRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAG 371 G ++LD+ +G F+++ SYL+G FS+ +KL G++AG Sbjct: 52 GGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAG 92
>XTH10_ARATH (Q9ZVK1) Probable xyloglucan endotransglucosylase/hydrolase protein| 10 precursor (EC 2.4.1.207) (At-XTH10) (XTH-10) Length = 299 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/51 (35%), Positives = 34/51 (66%) Frame = +3 Query: 222 NVRAGYDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGT 374 +V D R R ++ LD++SG +F + +++L+GQ +++KL+ G+S GT Sbjct: 49 HVNTSNDGRSR---TLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGT 96
>XTH4_ARATH (Q39099) Xyloglucan endotransglucosylase/hydrolase protein 4| precursor (EC 2.4.1.207) (At-XTH4) (XTH-4) Length = 296 Score = 39.3 bits (90), Expect = 0.002 Identities = 16/41 (39%), Positives = 28/41 (68%) Frame = +3 Query: 249 GRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAG 371 G ++LD+ +G F+++ SYL+G FS+ +KL G++AG Sbjct: 53 GGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAG 93
>XTH31_ARATH (P93046) Probable xyloglucan endotransglucosylase/hydrolase protein| 31 precursor (EC 2.4.1.207) (At-XTH31) (XTH-31) (AtXTR8) Length = 293 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +3 Query: 237 YDARGRQVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAGTD 377 + R + V ++ LD+ +G F++ R Y G F +KL PG +AG D Sbjct: 51 HQRREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVD 97
>XTH8_ARATH (Q8L9A9) Probable xyloglucan endotransglucosylase/hydrolase protein| 8 precursor (EC 2.4.1.207) (At-XTH8) (XTH-8) Length = 292 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/39 (41%), Positives = 28/39 (71%) Frame = +3 Query: 255 QVASIVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAG 371 ++ ++ LD +G F+T+ Y +G FS+++KLV G+SAG Sbjct: 45 EIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAG 83
>XTH3_ARATH (Q9LJR7) Probable xyloglucan endotransglucosylase/hydrolase protein| 3 precursor (EC 2.4.1.207) (At-XTH3) (XTH-3) Length = 290 Score = 31.6 bits (70), Expect = 0.49 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +3 Query: 267 IVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAG 371 + +D+ SGG F ++ +Y G F +++K+ GN+ G Sbjct: 59 LYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGG 93
>HXB4_XENLA (P09070) Homeobox protein Hox-B4 (Xhox-1A)| Length = 232 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +2 Query: 14 GRRAHL-PH*PLAS*PSRLLQEAEHPH 91 G +AHL PH P +S PS L+ +EH H Sbjct: 84 GEKAHLEPHMPTSSPPSCSLKSSEHKH 110
>XTH28_ARATH (Q38909) Probable xyloglucan endotransglucosylase/hydrolase protein| 28 precursor (EC 2.4.1.207) (At-XTH28) (XTH-28) Length = 332 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 267 IVLDRQSGGAFRTRRSYLYGQFSVQMKLVPGNSAG 371 + LD ++G F + YL+G FS +KL SAG Sbjct: 55 LTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAG 89
>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein| 1 (PRAX-1) (RIM-binding protein 1) (RIM-BP1) Length = 1847 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = +1 Query: 115 RAGLPRAPSPWTWPCWRQW 171 R G P A PW P W+ W Sbjct: 9 RLGDPGAMEPWALPAWQHW 27 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,697,152 Number of Sequences: 219361 Number of extensions: 427471 Number of successful extensions: 1476 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1476 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)