>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4641

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 69   PSGPAAIAVRSSDPHLPSPPSRSQGPQAVRFDPIRSRS 182
            PSG  A + RSS PH  + P +S  P   + DP R RS
Sbjct: 2796 PSG--ASSPRSSSPHDKNLPQKSTAPVKTKLDPPRERS 2831

>FLGH1_BRAJA (Q89I09) Flagellar L-ring protein 1 precursor (Basal body L-ring|
           protein 1)
          Length = 254

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 3/163 (1%)
 Frame = +1

Query: 46  NPSIHPFYHPVRPPSPSVRLTPTSPXXXXXXXXXXXFDSTRSDPVRSMXXXXXXXXXXXX 225
           NP+  P Y PV+ P P   +   +P           F   R+  +  +            
Sbjct: 49  NPTAQPGYKPVQMPMPKPEVASYNPNSLWRSGSRAFFKDQRAHQIGDLLTVTVNITDKAN 108

Query: 226 XXXXXXXXXXXXXXXGVS---REEVVVITQCATLGGKLPFDDASVGSVLSVIKNEESFGD 396
                          G++     + V        G  L  D  S       +  +E+   
Sbjct: 109 IANETQRSRTAKEDSGITDFIGSQTVTQPLKVLPGRLLTTDSTSSADGKGSVNRQEALQT 168

Query: 397 KLVAEISRVLKAGGIVLAQSFTPSTDQKPNNYIERQLLMGGFV 525
            + A +++VL  G +V+         +   NY  R+L++ G V
Sbjct: 169 NVAAVVTQVLPNGNLVV-----EGKQEIRVNYEIRELVVAGIV 206

>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa|
           retinoblastoma-associated protein) (PRB1) (P107)
          Length = 1068

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
 Frame = +1

Query: 280 REEVVVITQCATLGGKLPFDDASVGSVLSVIKNEESFGDKL-----------VAEISRVL 426
           RE+  VIT  A+    +    + + S+++ +KN  S  D+L           V  I ++L
Sbjct: 378 REKEAVITPVASATQSV----SRLQSIVAGLKNAPS--DQLINIFESCVRNPVENIMKIL 431

Query: 427 KAGGIVLAQSFTPSTDQKPNNYIE 498
           K  G    Q +T STD++P ++I+
Sbjct: 432 KGIGETFCQHYTQSTDEQPGSHID 455

>SYR1_BACHD (Q9K6C1) Arginyl-tRNA synthetase 1 (EC 6.1.1.19) (Arginine--tRNA|
           ligase 1) (ArgRS 1)
          Length = 556

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +1

Query: 280 REEVVVITQCATLGGKLPFDDASVGSVLSVIKNEESFGD---KLVAEISRVLKAGGIVLA 450
           REE+VV  + A L       D ++  V+     E++ GD    +  +++RV K    ++A
Sbjct: 12  REEIVVAVKAAGLA-----TDETIPEVILETPKEKAHGDFATNMAMQLARVAKKAPRLIA 66

Query: 451 QSFTPSTDQKPNNYIERQLLMGGFV 525
           +  T   D+K     + ++   GF+
Sbjct: 67  EELTAKLDRKRAAIEKIEIAGPGFI 91

>RRMA_ECOLI (P36999) Ribosomal RNA large subunit methyltransferase A (EC|
           2.1.1.51) (rRNA (guanine-N(1)-)-methyltransferase) (23S
           rRNA m1G745 methyltransferase)
          Length = 269

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 298 ITQCATLGGKLPFDDASVGSVLSVIKNEESFGDKLVAEISRVLKAGGIVLAQSFTP 465
           +T C     +LPF D S+ +++ +      +      E++RV+K GG V+  +  P
Sbjct: 132 VTFCVASSHRLPFSDTSMDAIIRI------YAPCKAEELARVVKPGGWVITATPGP 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,330,374
Number of Sequences: 219361
Number of extensions: 1063269
Number of successful extensions: 3082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3082
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)