ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SHK2_SCHPO (Q10056) Serine/threonine-protein kinase shk2 (EC 2.7... 31 2.1
2KAX11_LEIQH (P13487) Potassium channel toxin alpha-KTx 1.1 precu... 30 3.6
3KAX1C_LEIQH (P59943) Potassium channel toxin alpha-KTx 1.12 prec... 30 6.2
4STE20_CANAL (Q92212) Serine/threonine-protein kinase STE20 homol... 29 8.1
5STK16_MOUSE (O88697) Serine/threonine-protein kinase 16 (EC 2.7.... 29 8.1

>SHK2_SCHPO (Q10056) Serine/threonine-protein kinase shk2 (EC 2.7.11.1)|
          Length = 589

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 438 ALKKVLIQSDQHLELVRQEIRVSSQSSHPNLLPLLENAII 557
           A+K + +Q     EL+  EI V  +S HPN++  L++ ++
Sbjct: 341 AIKSIDLQCQTRKELILNEITVMRESIHPNIVTYLDSFLV 380



to top

>KAX11_LEIQH (P13487) Potassium channel toxin alpha-KTx 1.1 precursor|
           (Charybdotoxin) (ChTX) (ChTX-Lq1) (ChTx-a)
          Length = 59

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 523 GWLD*EDTRISCRTSSKCWSL 461
           GW + + T +SC TS +CWS+
Sbjct: 18  GWSEAQFTNVSCTTSKECWSV 38



to top

>KAX1C_LEIQH (P59943) Potassium channel toxin alpha-KTx 1.12 precursor|
           (Charybdotoxin b) (ChTx-b)
          Length = 59

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 523 GWLD*EDTRISCRTSSKCWSL 461
           GW + + T +SC TS +CWS+
Sbjct: 18  GWSEAQFTDVSCTTSKECWSV 38



to top

>STE20_CANAL (Q92212) Serine/threonine-protein kinase STE20 homolog (EC 2.7.11.1)|
          Length = 1230

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 438  ALKKVLIQSDQHLELVRQEIRVSSQSSHPNLLPLLENAII 557
            A+K++ ++     EL+  EI V   SSHPN++  +++ ++
Sbjct: 981  AIKQMNLEQQPKKELIINEILVMKGSSHPNIVNFIDSYLL 1020



to top

>STK16_MOUSE (O88697) Serine/threonine-protein kinase 16 (EC 2.7.11.1) (Protein|
           kinase PKL12) (Myristoylated and palmitoylated
           serine/threonine-protein kinase) (MPSK)
           (TGF-beta-stimulated factor 1) (TSF-1) (Protein kinase
           Krct)
          Length = 304

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 435 YALKKVLIQSDQHLELVRQEIRVSSQSSHPNLLPLL 542
           YALK++L    Q  E  ++E  +     HPN+L L+
Sbjct: 45  YALKRILCHEQQDQEEAQREAEMHRLFQHPNILRLM 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,640,933
Number of Sequences: 219361
Number of extensions: 954491
Number of successful extensions: 3803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3803
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top