ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group... 50 0.002
2ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
4dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
5dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
6dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
7ref|XM_479036.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.13
8dbj|AK062673.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.13
9gb|BC081555.1| Danio rerio zgc:86648, mRNA (cDNA clone MGC:86648... 42 0.53
10emb|BX927313.11| Zebrafish DNA sequence from clone CH211-12A1 in... 42 0.53
11ref|NM_001004608.1| Danio rerio zgc:86648 (zgc:86648), mRNA 42 0.53
12emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome;... 42 0.53
13gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, comp... 40 2.1
14ref|XM_865092.1| PREDICTED: Bos taurus similar to Retinoblastoma... 40 2.1
15ref|XM_591584.2| PREDICTED: Bos taurus similar to Retinoblastoma... 40 2.1
16gb|AC122898.4| Mus musculus BAC clone RP23-71K9 from 1, complete... 40 2.1
17gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, com... 40 2.1
18gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8... 40 2.1
19gb|AC112962.15| Mus musculus chromosome 19, clone RP24-74N6, com... 38 8.3
20ref|NM_013699.1| Mus musculus upstream binding protein 1 (Ubp1),... 38 8.3
21gb|DQ483859.1| Gymnogyps californianus clone 25G microsatellite ... 38 8.3
22emb|CT025531.9| Mouse DNA sequence from clone RP23-280C13 on chr... 38 8.3
23gb|BC034749.1| Mus musculus upstream binding protein 1, mRNA (cD... 38 8.3
24gb|AY944607.1| Plagianthus regius 18S ribosomal RNA gene, partia... 38 8.3
25gb|AY944606.1| Plagianthus divaricatus 18S ribosomal RNA gene, p... 38 8.3
26gb|AY944605.1| Hoheria sexstylosa 18S ribosomal RNA gene, partia... 38 8.3
27gb|AY944604.1| Hoheria populnea 18S ribosomal RNA gene, partial ... 38 8.3
28gb|AY944603.1| Hoheria ovata 18S ribosomal RNA gene, partial seq... 38 8.3
29gb|AY944601.1| Hoheria lyallii 18S ribosomal RNA gene, partial s... 38 8.3
30gb|AY944599.1| Hoheria lyallii 18S ribosomal RNA gene, partial s... 38 8.3
31gb|AY944598.1| Hoheria lyallii 18S ribosomal RNA gene, partial s... 38 8.3
32gb|AY944594.1| Hoheria lyallii 18S ribosomal RNA gene, partial s... 38 8.3
33gb|AY944586.1| Hoheria equitum 18S ribosomal RNA gene, partial s... 38 8.3
34gb|AY944585.1| Hoheria angustifolia 18S ribosomal RNA gene, part... 38 8.3
35emb|CR628337.1| Legionella pneumophila str. Lens complete genome 38 8.3
36emb|AL591064.11| Mouse DNA sequence from clone RP23-395E18 on ch... 38 8.3
37gb|AY182062.1| Mus musculus CP2B (Cp2b) mRNA, complete cds 38 8.3
38dbj|AK140942.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 38 8.3
39dbj|AK145619.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 38 8.3
40gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, co... 38 8.3
41gb|AC157997.2| Mus musculus BAC clone RP24-129N18 from chromosom... 38 8.3
42dbj|AK079815.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 38 8.3
43dbj|AB221581.1| Mus musculus cDNA pooled tissues:(tissue_type=br... 38 8.3
44gb|AY086458.1| Arabidopsis thaliana clone 252174 mRNA, complete ... 38 8.3
45gb|AY591853.1| Selenothamnus squamatus internal transcribed spac... 38 8.3
46gb|AY591852.1| Selenothamnus helmsii internal transcribed spacer... 38 8.3
47gb|AY591850.1| Plagianthus regius internal transcribed spacer 1,... 38 8.3
48gb|AY591849.1| Plagianthus divaricatus internal transcribed spac... 38 8.3
49gb|AY591836.1| Lawrencia spicata internal transcribed spacer 1, ... 38 8.3
50gb|AY591835.1| Lawrencia glomerata internal transcribed spacer 1... 38 8.3
51gb|AY591830.1| Hoheria sp. 436-86 internal transcribed spacer 1,... 38 8.3
52gb|AY591829.1| Hoheria sexstylosa internal transcribed spacer 1,... 38 8.3
53gb|AY591828.1| Hoheria angustifolia internal transcribed spacer ... 38 8.3
54gb|AY591826.1| Gynatrix pulchella internal transcribed spacer 1,... 38 8.3
55gb|AY591811.1| Asterotrichion discolor internal transcribed spac... 38 8.3
56gb|U20086.1|MMU20086 Mus domesticus nuclear binding factor NF2d9... 38 8.3
57gb|AY112347.1| Zea mays CL32321_1 mRNA sequence 38 8.3
58emb|AJ274967.1|SHO274967 Sida hookeriana internal transcribed sp... 38 8.3
59emb|CT010476.10| Mouse DNA sequence from clone RP23-339L19 on ch... 38 8.3
60gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromoso... 38 8.3 
>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112
           mRNA
          Length = 1006

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 37  tcttcctcgtggcgctgctactcttgtgcagctccat 73
           ||||||||||||||||||| |||| ||||||| ||||
Sbjct: 94  tcttcctcgtggcgctgctgctctcgtgcagcaccat 130



 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 142 tcgtcccggagctgccaaagcccga 166
           |||| ||||||||||||||||||||
Sbjct: 361 tcgtgccggagctgccaaagcccga 385
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>ref|XM_479031.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1005

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 37  tcttcctcgtggcgctgctactcttgtgcagctccat 73
           ||||||||||||||||||| |||| ||||||| ||||
Sbjct: 91  tcttcctcgtggcgctgctgctctcgtgcagcaccat 127



 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 142 tcgtcccggagctgccaaagcccga 166
           |||| ||||||||||||||||||||
Sbjct: 358 tcgtgccggagctgccaaagcccga 382
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 37       tcttcctcgtggcgctgctactcttgtgcagctccat 73
                ||||||||||||||||||| |||| ||||||| ||||
Sbjct: 24417442 tcttcctcgtggcgctgctgctctcgtgcagcaccat 24417406



 Score = 44.1 bits (22), Expect = 0.13
 Identities = 54/64 (84%), Gaps = 3/64 (4%)
 Strand = Plus / Minus

                                                                            
Query: 14       caagaacaccatgtcctcc---cttgtcttcctcgtggcgctgctactcttgtgcagctc 70
                ||||||| |||||||||||   ||| |||||||| |||||||||| ||||  || |||||
Sbjct: 24428280 caagaactccatgtcctcctcgcttctcttcctcatggcgctgctgctctcatggagctc 24428221

                    
Query: 71       catc 74
                ||||
Sbjct: 24428220 catc 24428217



 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 142      tcgtcccggagctgccaaagcccga 166
                |||| ||||||||||||||||||||
Sbjct: 24417175 tcgtgccggagctgccaaagcccga 24417151



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 147      ccggagctgccaaagcccga 166
                ||||||||||||||||||||
Sbjct: 24428123 ccggagctgccaaagcccga 24428104
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>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_B10
          Length = 100294

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 37    tcttcctcgtggcgctgctactcttgtgcagctccat 73
             ||||||||||||||||||| |||| ||||||| ||||
Sbjct: 43309 tcttcctcgtggcgctgctgctctcgtgcagcaccat 43273



 Score = 44.1 bits (22), Expect = 0.13
 Identities = 54/64 (84%), Gaps = 3/64 (4%)
 Strand = Plus / Minus

                                                                         
Query: 14    caagaacaccatgtcctcc---cttgtcttcctcgtggcgctgctactcttgtgcagctc 70
             ||||||| |||||||||||   ||| |||||||| |||||||||| ||||  || |||||
Sbjct: 54147 caagaactccatgtcctcctcgcttctcttcctcatggcgctgctgctctcatggagctc 54088

                 
Query: 71    catc 74
             ||||
Sbjct: 54087 catc 54084



 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 142   tcgtcccggagctgccaaagcccga 166
             |||| ||||||||||||||||||||
Sbjct: 43042 tcgtgccggagctgccaaagcccga 43018



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   ccggagctgccaaagcccga 166
             ||||||||||||||||||||
Sbjct: 53990 ccggagctgccaaagcccga 53971
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>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full
           insert sequence
          Length = 1005

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 37  tcttcctcgtggcgctgctactcttgtgcagctccat 73
           ||||||||||||||||||| |||| ||||||| ||||
Sbjct: 91  tcttcctcgtggcgctgctgctctcgtgcagcaccat 127



 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 142 tcgtcccggagctgccaaagcccga 166
           |||| ||||||||||||||||||||
Sbjct: 358 tcgtgccggagctgccaaagcccga 382
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>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full
           insert sequence
          Length = 1006

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 37  tcttcctcgtggcgctgctactcttgtgcagctccat 73
           ||||||||||||||||||| |||| ||||||| ||||
Sbjct: 94  tcttcctcgtggcgctgctgctctcgtgcagcaccat 130



 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 142 tcgtcccggagctgccaaagcccga 166
           |||| ||||||||||||||||||||
Sbjct: 361 tcgtgccggagctgccaaagcccga 385
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>ref|XM_479036.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 678

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 54/64 (84%), Gaps = 3/64 (4%)
 Strand = Plus / Plus

                                                                       
Query: 14  caagaacaccatgtcctcc---cttgtcttcctcgtggcgctgctactcttgtgcagctc 70
           ||||||| |||||||||||   ||| |||||||| |||||||||| ||||  || |||||
Sbjct: 78  caagaactccatgtcctcctcgcttctcttcctcatggcgctgctgctctcatggagctc 137

               
Query: 71  catc 74
           ||||
Sbjct: 138 catc 141



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 ccggagctgccaaagcccga 166
           ||||||||||||||||||||
Sbjct: 235 ccggagctgccaaagcccga 254
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>dbj|AK062673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G06, full
           insert sequence
          Length = 678

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 54/64 (84%), Gaps = 3/64 (4%)
 Strand = Plus / Plus

                                                                       
Query: 14  caagaacaccatgtcctcc---cttgtcttcctcgtggcgctgctactcttgtgcagctc 70
           ||||||| |||||||||||   ||| |||||||| |||||||||| ||||  || |||||
Sbjct: 78  caagaactccatgtcctcctcgcttctcttcctcatggcgctgctgctctcatggagctc 137

               
Query: 71  catc 74
           ||||
Sbjct: 138 catc 141



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 ccggagctgccaaagcccga 166
           ||||||||||||||||||||
Sbjct: 235 ccggagctgccaaagcccga 254
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>gb|BC081555.1| Danio rerio zgc:86648, mRNA (cDNA clone MGC:86648 IMAGE:6893873),
            complete cds
          Length = 1488

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 50   gctgctactcttgtgcagctc 70
            |||||||||||||||||||||
Sbjct: 1365 gctgctactcttgtgcagctc 1385
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>emb|BX927313.11| Zebrafish DNA sequence from clone CH211-12A1 in linkage group 18,
             complete sequence
          Length = 189797

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    gctgctactcttgtgcagctc 70
             |||||||||||||||||||||
Sbjct: 26404 gctgctactcttgtgcagctc 26424
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>ref|NM_001004608.1| Danio rerio zgc:86648 (zgc:86648), mRNA
          Length = 1488

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 50   gctgctactcttgtgcagctc 70
            |||||||||||||||||||||
Sbjct: 1365 gctgctactcttgtgcagctc 1385
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>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7
          Length = 346683

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 87     gcagcacgacacctagaggaggctgttcccaag 119
              |||||| ||| ||||||||||||||||| ||||
Sbjct: 124178 gcagcaagacgcctagaggaggctgttcgcaag 124146
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>gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, complete sequence
          Length = 138419

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tgtcctcccttgtcttcctc 44
              ||||||||||||||||||||
Sbjct: 132235 tgtcctcccttgtcttcctc 132254
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>ref|XM_865092.1| PREDICTED: Bos taurus similar to Retinoblastoma-binding protein 9
           (RBBP-9) (B5T overexpressed gene protein) (Bog protein),
           transcript variant 3 (LOC513835), mRNA
          Length = 2345

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  gtgcagctccatctccatga 81
           ||||||||||||||||||||
Sbjct: 192 gtgcagctccatctccatga 173
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>ref|XM_591584.2| PREDICTED: Bos taurus similar to Retinoblastoma-binding protein 9
           (RBBP-9) (B5T overexpressed gene protein) (Bog protein),
           transcript variant 1 (LOC513835), mRNA
          Length = 1187

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  gtgcagctccatctccatga 81
           ||||||||||||||||||||
Sbjct: 195 gtgcagctccatctccatga 176
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>gb|AC122898.4| Mus musculus BAC clone RP23-71K9 from 1, complete sequence
          Length = 230945

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     tgtcctcccttgtcttcctc 44
              ||||||||||||||||||||
Sbjct: 129711 tgtcctcccttgtcttcctc 129692
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>gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, complete sequence
          Length = 138416

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     catgtcctcccttgtcttcc 42
              ||||||||||||||||||||
Sbjct: 112821 catgtcctcccttgtcttcc 112840
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>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence
          Length = 190701

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     catgtcctcccttgtcttcc 42
              ||||||||||||||||||||
Sbjct: 188611 catgtcctcccttgtcttcc 188592
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>gb|AC112962.15| Mus musculus chromosome 19, clone RP24-74N6, complete sequence
          Length = 182999

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    acaccatgtcctcccttgt 37
             |||||||||||||||||||
Sbjct: 68226 acaccatgtcctcccttgt 68244
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>ref|NM_013699.1| Mus musculus upstream binding protein 1 (Ubp1), mRNA
          Length = 2208

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 59  cttgtgcagctccatctcc 77
           |||||||||||||||||||
Sbjct: 969 cttgtgcagctccatctcc 951
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>gb|DQ483859.1| Gymnogyps californianus clone 25G microsatellite sequence
          Length = 1344

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  tgtcctcccttgtcttcct 43
           |||||||||||||||||||
Sbjct: 833 tgtcctcccttgtcttcct 851
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>emb|CT025531.9| Mouse DNA sequence from clone RP23-280C13 on chromosome 9, complete
              sequence
          Length = 206038

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     cttgtgcagctccatctcc 77
              |||||||||||||||||||
Sbjct: 144107 cttgtgcagctccatctcc 144125
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>gb|BC034749.1| Mus musculus upstream binding protein 1, mRNA (cDNA clone
            IMAGE:4946022), with apparent retained intron
          Length = 4089

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 59   cttgtgcagctccatctcc 77
            |||||||||||||||||||
Sbjct: 1705 cttgtgcagctccatctcc 1687
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>gb|AY944607.1| Plagianthus regius 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944606.1| Plagianthus divaricatus 18S ribosomal RNA gene, partial sequence;
           and internal transcribed spacer 1, 5.8S ribosomal RNA
           gene, internal transcribed spacer 2, and 28S ribosomal
           RNA gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944605.1| Hoheria sexstylosa 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944604.1| Hoheria populnea 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944603.1| Hoheria ovata 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944601.1| Hoheria lyallii 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944599.1| Hoheria lyallii 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944598.1| Hoheria lyallii 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944594.1| Hoheria lyallii 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944586.1| Hoheria equitum 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>gb|AY944585.1| Hoheria angustifolia 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 28S ribosomal RNA
           gene, complete sequence
          Length = 752

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 295 gtggcgctgctactcttgt 313
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 145     tcccggagctgccaaagcc 163
               |||||||||||||||||||
Sbjct: 2737640 tcccggagctgccaaagcc 2737658
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>emb|AL591064.11| Mouse DNA sequence from clone RP23-395E18 on chromosome 2, complete
             sequence
          Length = 200078

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    cagctccatctccatgagc 83
             |||||||||||||||||||
Sbjct: 33740 cagctccatctccatgagc 33758
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>gb|AY182062.1| Mus musculus CP2B (Cp2b) mRNA, complete cds
          Length = 1623

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 59   cttgtgcagctccatctcc 77
            |||||||||||||||||||
Sbjct: 1075 cttgtgcagctccatctcc 1057
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>dbj|AK140942.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130077F12 product:upstream binding
           protein 1, full insert sequence
          Length = 2747

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 59  cttgtgcagctccatctcc 77
           |||||||||||||||||||
Sbjct: 383 cttgtgcagctccatctcc 365
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>dbj|AK145619.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0023B07 product:Warning: possibly
            chimeric clone, full insert sequence
          Length = 3452

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 59   cttgtgcagctccatctcc 77
            |||||||||||||||||||
Sbjct: 1287 cttgtgcagctccatctcc 1269
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>gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, complete sequence
          Length = 190666

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    acaccatgtcctcccttgt 37
             |||||||||||||||||||
Sbjct: 24774 acaccatgtcctcccttgt 24756
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>gb|AC157997.2| Mus musculus BAC clone RP24-129N18 from chromosome 9, complete sequence
          Length = 178445

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     cttgtgcagctccatctcc 77
              |||||||||||||||||||
Sbjct: 153187 cttgtgcagctccatctcc 153205
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>dbj|AK079815.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430076B15 product:upstream binding
           protein 1, full insert sequence
          Length = 2577

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 59  cttgtgcagctccatctcc 77
           |||||||||||||||||||
Sbjct: 213 cttgtgcagctccatctcc 195
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>dbj|AB221581.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
           days
           neonate,strain=BALB/c),(tissue_type=testis,
           dev_stage=adult, strain=C57BL/6J), clone:V01X010A01
          Length = 1514

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 59  cttgtgcagctccatctcc 77
           |||||||||||||||||||
Sbjct: 966 cttgtgcagctccatctcc 948
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>gb|AY086458.1| Arabidopsis thaliana clone 252174 mRNA, complete sequence
          Length = 796

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 27  tcctcccttgtcttcctcgtggc 49
           |||| ||||||||||||||||||
Sbjct: 447 tcctaccttgtcttcctcgtggc 469
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>gb|AY591853.1| Selenothamnus squamatus internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 689

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 265 gtggcgctgctactcttgt 283
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>gb|AY591852.1| Selenothamnus helmsii internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 689

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 265 gtggcgctgctactcttgt 283
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>gb|AY591850.1| Plagianthus regius internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 684

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|AY591849.1| Plagianthus divaricatus internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 684

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|AY591836.1| Lawrencia spicata internal transcribed spacer 1, 5.8S ribosomal RNA
           gene, and internal transcribed spacer 2, complete
           sequence
          Length = 685

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|AY591835.1| Lawrencia glomerata internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 689

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|AY591830.1| Hoheria sp. 436-86 internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 684

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|AY591829.1| Hoheria sexstylosa internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 684

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|AY591828.1| Hoheria angustifolia internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 684

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|AY591826.1| Gynatrix pulchella internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 684

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|AY591811.1| Asterotrichion discolor internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 684

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 264 gtggcgctgctactcttgt 282
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>gb|U20086.1|MMU20086 Mus domesticus nuclear binding factor NF2d9 mRNA, complete cds
          Length = 2208

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 59  cttgtgcagctccatctcc 77
           |||||||||||||||||||
Sbjct: 969 cttgtgcagctccatctcc 951
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>gb|AY112347.1| Zea mays CL32321_1 mRNA sequence
          Length = 636

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 147 ccggagctgccaaagcccgaact 169
           ||||||||||| |||||||||||
Sbjct: 434 ccggagctgcccaagcccgaact 412
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>emb|AJ274967.1|SHO274967 Sida hookeriana internal transcribed spacer 1 (ITS1)
          Length = 293

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  gtggcgctgctactcttgt 63
           |||||||||||||||||||
Sbjct: 265 gtggcgctgctactcttgt 283
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>emb|CT010476.10| Mouse DNA sequence from clone RP23-339L19 on chromosome 12, complete
              sequence
          Length = 235489

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 98     cctagaggaggctgttccc 116
              |||||||||||||||||||
Sbjct: 132003 cctagaggaggctgttccc 132021
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>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete
             sequence
          Length = 228603

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 143   cgtcccggagctgccaaag 161
             |||||||||||||||||||
Sbjct: 31426 cgtcccggagctgccaaag 31408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,224,053
Number of Sequences: 3902068
Number of extensions: 1224053
Number of successful extensions: 101061
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100893
Number of HSP's gapped (non-prelim): 168
length of query: 170
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 148
effective length of database: 17,147,199,772
effective search space: 2537785566256
effective search space used: 2537785566256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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